Wall clock time and date at job start Mon Mar 30 2020 02:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86807 * 119.99777 * 2 1 4 4 H 1.48502 * 109.47148 * 270.00485 * 3 2 1 5 5 H 1.48501 * 109.46797 * 30.00502 * 3 2 1 6 6 H 1.48498 * 109.46878 * 150.00193 * 3 2 1 7 7 C 1.40051 * 120.00427 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00333 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99919 * 0.02562 * 7 2 1 10 10 O 1.21692 * 119.99939 * 5.67436 * 9 7 2 11 11 N 1.34778 * 119.99895 * 185.68494 * 9 7 2 12 12 C 1.46925 * 120.62823 * 174.73042 * 11 9 7 13 13 C 1.53187 * 108.77614 * 233.62584 * 12 11 9 14 14 C 1.53039 * 109.31521 * 305.36848 * 13 12 11 15 15 N 1.46495 * 109.46129 * 181.38537 * 14 13 12 16 16 C 1.39003 * 120.00243 * 154.99916 * 15 14 13 17 17 C 1.39140 * 119.70197 * 0.02562 * 16 15 14 18 18 C 1.38301 * 119.09357 * 180.02562 * 17 16 15 19 19 C 1.38886 * 118.50734 * 359.97438 * 18 17 16 20 20 C 1.38026 * 119.32891 * 0.27897 * 19 18 17 21 21 N 1.31975 * 120.85260 * 359.44969 * 20 19 18 22 22 C 1.53035 * 109.53680 * 61.36418 * 14 13 12 23 23 C 1.46926 * 120.63027 * 354.75202 * 11 9 7 24 24 H 0.96996 * 120.00202 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.58783 * 113.83861 * 12 11 9 26 26 H 1.09001 * 109.70835 * 353.48966 * 12 11 9 27 27 H 1.09000 * 109.49884 * 185.41222 * 13 12 11 28 28 H 1.09001 * 109.52504 * 65.33903 * 13 12 11 29 29 H 1.09004 * 109.45725 * 301.35693 * 14 13 12 30 30 H 0.97004 * 120.00211 * 334.99803 * 15 14 13 31 31 H 1.07997 * 120.45305 * 0.02562 * 17 16 15 32 32 H 1.08003 * 120.74654 * 180.02562 * 18 17 16 33 33 H 1.07991 * 120.33535 * 180.02562 * 19 18 17 34 34 H 1.07992 * 119.57006 * 179.69466 * 20 19 18 35 35 H 1.09002 * 109.50384 * 58.58497 * 22 14 13 36 36 H 1.09000 * 109.50147 * 178.68362 * 22 14 13 37 37 H 1.09004 * 109.58207 * 246.15948 * 23 11 9 38 38 H 1.08998 * 109.58792 * 6.58303 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4880 2.0466 -1.4001 5 1 1.4380 2.6527 0.7002 6 1 3.5382 1.4402 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0017 10 8 0.0628 -2.4831 -0.1064 11 7 1.9442 -3.6449 0.1134 12 6 1.2182 -4.9169 0.2297 13 6 1.7148 -5.6559 1.4763 14 6 3.2362 -5.8048 1.4040 15 7 3.7110 -6.5402 2.5786 16 6 4.9067 -7.2466 2.5199 17 6 5.6481 -7.2505 1.3425 18 6 6.8356 -7.9579 1.2979 19 6 7.2441 -8.6400 2.4367 20 6 6.4564 -8.5973 3.5693 21 7 5.3301 -7.9096 3.5848 22 6 3.8852 -4.4192 1.3733 23 6 3.4133 -3.6662 0.1255 24 1 -0.4850 0.8400 0.0004 25 1 1.4046 -5.5262 -0.6547 26 1 0.1495 -4.7232 0.3212 27 1 1.2544 -6.6428 1.5217 28 1 1.4467 -5.0881 2.3673 29 1 3.5050 -6.3516 0.5001 30 1 3.1910 -6.5343 3.3975 31 1 5.3008 -6.7086 0.4753 32 1 7.4324 -7.9788 0.3979 33 1 8.1666 -9.2014 2.4347 34 1 6.7678 -9.1302 4.4554 35 1 3.5967 -3.8624 2.2649 36 1 4.9696 -4.5258 1.3454 37 1 3.7786 -4.1734 -0.7675 38 1 3.7933 -2.6449 0.1494 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927084346.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:23 Heat of formation + Delta-G solvation = -16.832685 kcal Electronic energy + Delta-G solvation = -20908.586770 eV Core-core repulsion = 17749.842738 eV Total energy + Delta-G solvation = -3158.744032 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20264 -40.22263 -38.22223 -35.88500 -34.65283 -33.32702 -32.59814 -31.81111 -29.90032 -28.34174 -25.59485 -24.57043 -23.91361 -23.14731 -22.00279 -20.62765 -18.64087 -18.42078 -17.93310 -17.46572 -16.54473 -16.25739 -15.94810 -15.74842 -15.55857 -15.36778 -15.16652 -14.65766 -14.46383 -14.20369 -13.79147 -13.44938 -13.38190 -13.04066 -12.96134 -12.73016 -12.55034 -12.32017 -12.17460 -11.99358 -11.91824 -11.54891 -11.01002 -10.93112 -10.61156 -10.30770 -9.77418 -9.11162 -8.59365 -8.28958 -6.83021 0.45604 0.63168 1.40016 1.41049 1.55947 2.16136 2.23597 2.47592 2.84284 3.08306 3.60062 3.66010 3.85933 3.89907 4.05348 4.14231 4.21635 4.30126 4.37844 4.46201 4.51866 4.53992 4.77420 4.82245 4.92596 4.93554 4.96179 4.97050 5.10119 5.22654 5.35426 5.40762 5.50982 5.76421 5.79402 6.13039 6.15532 6.40929 6.66503 6.88895 7.31571 7.42184 8.47475 8.67778 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029915 B = 0.003895 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.756162 B = 7187.782161 C = 7697.703075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.029 3.971 3 Si 0.993 3.007 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.248 1.248 7 C -0.569 4.569 8 H 0.095 0.905 9 C 0.541 3.459 10 O -0.633 6.633 11 N -0.645 5.645 12 C 0.122 3.878 13 C -0.124 4.124 14 C 0.171 3.829 15 N -0.720 5.720 16 C 0.387 3.613 17 C -0.253 4.253 18 C -0.036 4.036 19 C -0.238 4.238 20 C 0.131 3.869 21 N -0.579 5.579 22 C -0.135 4.135 23 C 0.121 3.879 24 H 0.273 0.727 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.401 0.599 31 H 0.139 0.861 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.174 0.826 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.038 -14.493 3.040 21.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.186 4.186 3 Si 0.812 3.188 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.171 1.171 7 C -0.605 4.605 8 H 0.112 0.888 9 C 0.347 3.653 10 O -0.520 6.520 11 N -0.381 5.381 12 C -0.002 4.002 13 C -0.163 4.163 14 C 0.066 3.934 15 N -0.350 5.350 16 C 0.152 3.848 17 C -0.278 4.278 18 C -0.062 4.062 19 C -0.261 4.261 20 C -0.026 4.026 21 N -0.298 5.298 22 C -0.175 4.175 23 C -0.003 4.003 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.236 0.764 31 H 0.157 0.843 32 H 0.175 0.825 33 H 0.174 0.826 34 H 0.191 0.809 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.664 -14.310 3.558 20.796 hybrid contribution -0.016 0.853 -0.277 0.897 sum 14.649 -13.457 3.280 20.160 Atomic orbital electron populations 1.70185 1.09545 1.28842 1.36781 1.26973 0.95459 1.04923 0.91252 0.85086 0.78881 0.75345 0.79441 1.18581 1.20046 1.17079 1.21521 0.94827 0.89830 1.54359 0.88751 1.18636 0.86503 0.84254 0.75870 1.90543 1.16771 1.87430 1.57296 1.48067 1.06504 1.05528 1.78030 1.21182 0.96845 0.85112 0.97056 1.22036 0.94919 1.01098 0.98269 1.20819 0.92907 0.91269 0.88432 1.44659 1.21514 1.53141 1.15726 1.18635 0.87036 0.89124 0.90024 1.21676 0.98946 1.08512 0.98649 1.21721 0.93829 0.91492 0.99174 1.22128 1.03715 1.05850 0.94399 1.22867 0.88034 0.92796 0.98887 1.67153 1.19117 1.14058 1.29453 1.22321 1.00972 0.95874 0.98369 1.21586 0.79884 1.01722 0.97059 0.91688 0.91344 0.92779 0.88832 0.92906 0.88706 0.76404 0.84297 0.82494 0.82577 0.80879 0.93313 0.89586 0.91101 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.47 11.84 21.84 0.26 -50.21 16 2 C 0.03 1.60 5.50 85.31 0.47 2.07 16 3 Si 0.99 40.59 29.56 68.60 2.03 42.62 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 7 C -0.57 -31.68 8.88 24.83 0.22 -31.46 16 8 H 0.09 4.66 5.64 -2.91 -0.02 4.64 16 9 C 0.54 31.11 7.61 86.36 0.66 31.77 16 10 O -0.63 -42.37 14.48 -4.32 -0.06 -42.44 16 11 N -0.64 -28.28 2.97 -823.98 -2.45 -30.73 16 12 C 0.12 4.53 6.41 86.36 0.55 5.09 16 13 C -0.12 -3.57 5.55 30.67 0.17 -3.40 16 14 C 0.17 4.28 2.10 45.02 0.09 4.38 16 15 N -0.72 -17.67 5.24 -324.43 -1.70 -19.37 16 16 C 0.39 9.62 7.63 133.07 1.02 10.63 16 17 C -0.25 -5.30 8.82 22.50 0.20 -5.10 16 18 C -0.04 -0.60 10.17 22.44 0.23 -0.38 16 19 C -0.24 -3.73 10.10 22.37 0.23 -3.50 16 20 C 0.13 2.51 11.17 84.62 0.95 3.45 16 21 N -0.58 -14.69 10.39 -193.26 -2.01 -16.70 16 22 C -0.14 -3.81 5.57 30.67 0.17 -3.64 16 23 C 0.12 4.10 6.35 86.36 0.55 4.65 16 24 H 0.27 15.20 8.29 -92.71 -0.77 14.43 16 25 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.05 2.39 7.04 -2.39 -0.02 2.37 16 27 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.10 2.13 6.45 -2.38 -0.02 2.11 16 30 H 0.40 9.89 8.73 -92.71 -0.81 9.08 16 31 H 0.14 2.64 6.09 -2.91 -0.02 2.62 16 32 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.16 1.47 8.06 -2.92 -0.02 1.44 16 34 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 2.10 7.67 -2.39 -0.02 2.08 16 37 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.08 3.04 5.30 -2.39 -0.01 3.03 16 Total: -1.00 -77.12 311.78 1.84 -75.28 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.28 Total: 26.99 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 5.50 Total: 14.55 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -5.90 Total: -117.01 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.06 Total: -42.44 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -77.12 1.84 -75.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927084346.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.450 kcal (2) G-P(sol) polarization free energy of solvation -77.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds