Wall clock time and date at job start Mon Mar 30 2020 02:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48498 * 109.46881 * 239.99675 * 3 2 1 5 5 H 1.48490 * 109.47148 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47075 * 119.99815 * 3 2 1 7 7 C 1.38985 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99879 * 180.02562 * 7 2 1 9 9 N 1.37322 * 120.00232 * 0.02562 * 7 2 1 10 10 C 1.36493 * 126.07081 * 180.02562 * 9 7 2 11 11 C 1.35676 * 107.50768 * 180.02562 * 10 9 7 12 12 N 1.40592 * 126.08157 * 179.97438 * 11 10 9 13 13 C 1.34783 * 120.00336 * 180.02562 * 12 11 10 14 14 O 1.21307 * 119.99548 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00128 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.46950 * 179.97438 * 15 13 12 17 17 H 1.09000 * 109.64125 * 54.57668 * 16 15 13 18 18 C 1.53028 * 109.81442 * 294.04682 * 16 15 13 19 19 C 1.50068 * 110.14332 * 190.77677 * 18 16 15 20 20 C 1.29440 * 124.08015 * 17.13513 * 19 18 16 21 21 C 1.50172 * 124.14460 * 359.75709 * 20 19 18 22 22 C 1.53025 * 110.09423 * 16.71580 * 21 20 19 23 23 C 1.40649 * 107.83836 * 0.26233 * 11 10 9 24 24 N 1.30914 * 108.38490 * 359.54934 * 23 11 10 25 25 H 0.97008 * 119.99828 * 359.97438 * 1 2 3 26 26 H 1.08001 * 126.24059 * 359.97438 * 10 9 7 27 27 H 0.97004 * 120.00454 * 359.97438 * 12 11 10 28 28 H 1.08997 * 109.47283 * 59.99470 * 15 13 12 29 29 H 1.09002 * 109.46985 * 299.99437 * 15 13 12 30 30 H 1.09000 * 109.35968 * 310.98407 * 18 16 15 31 31 H 1.09006 * 109.35777 * 70.57038 * 18 16 15 32 32 H 1.08002 * 117.95885 * 197.11000 * 19 18 16 33 33 H 1.07990 * 117.96474 * 179.55071 * 20 19 18 34 34 H 1.08999 * 109.20532 * 256.63607 * 21 20 19 35 35 H 1.08991 * 109.55695 * 137.02016 * 21 20 19 36 36 H 1.09002 * 109.64203 * 191.09563 * 22 21 20 37 37 H 1.09002 * 109.64069 * 70.67946 * 22 21 20 38 38 H 1.08004 * 125.80664 * 179.70768 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1008 1.6963 -1.2125 5 1 1.2821 2.7464 0.0006 6 1 3.1007 1.6964 1.2126 7 6 2.0078 -1.2037 0.0005 8 1 3.0878 -1.2037 0.0010 9 7 1.3212 -2.3929 0.0005 10 6 1.8748 -3.6405 0.0015 11 6 0.8576 -4.5384 0.0006 12 7 0.9888 -5.9382 0.0006 13 6 -0.1104 -6.7182 -0.0010 14 8 -1.2130 -6.2123 -0.0019 15 6 0.0303 -8.2186 -0.0004 16 6 -1.3584 -8.8610 -0.0018 17 1 -1.9398 -8.4750 -0.8391 18 6 -2.0770 -8.5459 1.3120 19 6 -3.3198 -9.3782 1.4338 20 6 -3.5534 -10.4399 0.7312 21 6 -2.6170 -10.9858 -0.3082 22 6 -1.2219 -10.3836 -0.1271 23 6 -0.3514 -3.8198 -0.0072 24 7 -0.0717 -2.5409 -0.0010 25 1 -0.4850 0.8401 0.0004 26 1 2.9300 -3.8709 0.0021 27 1 1.8704 -6.3428 0.0010 28 1 0.5744 -8.5322 0.8905 29 1 0.5771 -8.5326 -0.8895 30 1 -1.4128 -8.7639 2.1484 31 1 -2.3459 -7.4898 1.3326 32 1 -4.0655 -9.0725 2.1527 33 1 -4.4787 -10.9688 0.9052 34 1 -2.9940 -10.7326 -1.2990 35 1 -2.5578 -12.0699 -0.2125 36 1 -0.6032 -10.6262 -0.9911 37 1 -0.7635 -10.7861 0.7763 38 1 -1.3421 -4.2499 -0.0142 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931192850.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:17 Heat of formation + Delta-G solvation = 45.624051 kcal Electronic energy + Delta-G solvation = -20476.994458 eV Core-core repulsion = 17320.958754 eV Total energy + Delta-G solvation = -3156.035705 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.01055 -39.11029 -37.80973 -34.16102 -33.13038 -32.66658 -30.74876 -30.20428 -28.29568 -26.76284 -24.70210 -23.22174 -21.68910 -20.83698 -19.86131 -19.34394 -17.96193 -17.43443 -16.29442 -16.01981 -15.41182 -15.16403 -14.93101 -14.38146 -14.04901 -13.78426 -13.46789 -13.08070 -12.90971 -12.71440 -12.53547 -12.31065 -12.02774 -11.64979 -11.57280 -11.37323 -11.21305 -10.94047 -10.66473 -10.54676 -10.50841 -10.14738 -10.04988 -9.12539 -9.07806 -8.88474 -8.75475 -8.02265 -6.65074 -6.52882 -4.19746 2.32284 2.89543 3.05992 3.08827 3.10098 3.67066 3.71875 3.91983 4.46503 4.64255 4.68510 4.76807 4.92329 5.04731 5.17020 5.17798 5.34578 5.36600 5.49563 5.61612 5.67986 5.74511 5.80423 5.83486 5.95370 6.16921 6.27700 6.35941 6.46724 6.51484 6.68027 6.94612 6.99775 7.00787 7.18924 7.29765 7.89123 8.24357 8.34685 8.68191 8.94793 9.41471 9.71005 10.43147 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.053295 B = 0.003176 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.248009 B = 8813.999111 C = 9180.865704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.324 4.324 8 H 0.115 0.885 9 N -0.144 5.144 10 C -0.086 4.086 11 C -0.059 4.059 12 N -0.628 5.628 13 C 0.497 3.503 14 O -0.534 6.534 15 C -0.132 4.132 16 C -0.069 4.069 17 H 0.081 0.919 18 C -0.094 4.094 19 C -0.140 4.140 20 C -0.172 4.172 21 C -0.087 4.087 22 C -0.116 4.116 23 C -0.034 4.034 24 N -0.261 5.261 25 H 0.275 0.725 26 H 0.144 0.856 27 H 0.396 0.604 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.859 -17.340 0.570 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.133 0.867 9 N 0.088 4.912 10 C -0.237 4.237 11 C -0.164 4.164 12 N -0.271 5.271 13 C 0.283 3.717 14 O -0.411 6.411 15 C -0.172 4.172 16 C -0.088 4.088 17 H 0.100 0.900 18 C -0.131 4.131 19 C -0.158 4.158 20 C -0.190 4.190 21 C -0.124 4.124 22 C -0.154 4.154 23 C -0.210 4.210 24 N -0.092 5.092 25 H 0.085 0.915 26 H 0.162 0.838 27 H 0.228 0.772 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.624 -15.631 0.577 15.654 hybrid contribution 1.272 -0.375 0.060 1.328 sum 0.648 -16.006 0.637 16.032 Atomic orbital electron populations 1.70214 1.06109 1.28018 1.35416 1.25632 0.95698 1.00225 0.95538 0.85904 0.79138 0.79707 0.79435 1.19188 1.20152 1.19193 1.19807 0.91602 0.80614 1.53613 0.86740 1.44530 1.04043 1.03273 1.39324 1.21267 0.96823 0.85448 1.20140 1.17305 0.94223 0.81550 1.23339 1.42604 1.08335 1.04496 1.71639 1.20456 0.84431 0.88790 0.78018 1.90562 1.25749 1.75089 1.49746 1.21698 0.99331 0.92353 1.03854 1.20917 0.94521 0.93954 0.99381 0.90040 1.20654 0.94510 1.01342 0.96594 1.22142 0.98532 0.95867 0.99287 1.21980 0.99855 0.98156 0.99049 1.20413 0.94323 0.99543 0.98161 1.21679 0.96653 0.95248 1.01779 1.24114 0.98067 0.90711 1.08093 1.78246 0.90118 1.15162 1.25698 0.91456 0.83813 0.77165 0.89360 0.89269 0.91497 0.88638 0.88278 0.88500 0.91126 0.91442 0.91739 0.91845 0.80726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.80 11.81 55.49 0.66 -21.15 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 3 Si 0.93 19.09 29.55 -169.99 -5.02 14.06 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.32 -8.68 10.25 -14.81 -0.15 -8.83 16 8 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 9 N -0.14 -4.00 3.74 -11.41 -0.04 -4.04 16 10 C -0.09 -2.05 11.49 -16.39 -0.19 -2.23 16 11 C -0.06 -1.36 6.90 -83.84 -0.58 -1.94 16 12 N -0.63 -11.03 5.47 -10.00 -0.05 -11.08 16 13 C 0.50 8.35 7.56 -10.98 -0.08 8.27 16 14 O -0.53 -11.03 11.25 5.53 0.06 -10.97 16 15 C -0.13 -1.50 5.18 -27.88 -0.14 -1.65 16 16 C -0.07 -0.81 1.87 -90.40 -0.17 -0.98 16 17 H 0.08 1.12 7.93 -51.93 -0.41 0.71 16 18 C -0.09 -1.21 5.06 -28.17 -0.14 -1.35 16 19 C -0.14 -1.64 9.80 -35.90 -0.35 -1.99 16 20 C -0.17 -1.80 9.80 -35.85 -0.35 -2.15 16 21 C -0.09 -0.80 6.13 -28.13 -0.17 -0.97 16 22 C -0.12 -1.07 5.29 -26.52 -0.14 -1.21 16 23 C -0.03 -0.92 10.85 -17.03 -0.18 -1.10 16 24 N -0.26 -7.70 10.40 30.80 0.32 -7.38 16 25 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.14 2.85 8.06 -52.49 -0.42 2.43 16 27 H 0.40 5.30 8.83 -40.82 -0.36 4.94 16 28 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.10 1.51 6.31 -51.93 -0.33 1.18 16 32 H 0.10 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.10 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 38 H 0.18 4.61 5.92 -52.48 -0.31 4.30 16 LS Contribution 315.40 15.07 4.75 4.75 Total: -1.00 -33.03 315.40 -7.26 -40.29 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -5.18 Total: 10.54 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -2.76 Total: -15.02 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.88 Total: -43.65 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.06 Total: -10.97 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.03 -7.26 -40.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931192850.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.912 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds