Wall clock time and date at job start Mon Mar 30 2020 02:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48498 * 109.46881 * 239.99675 * 3 2 1 5 5 H 1.48490 * 109.47148 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47075 * 119.99815 * 3 2 1 7 7 C 1.38985 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99879 * 180.02562 * 7 2 1 9 9 N 1.37322 * 120.00232 * 0.02562 * 7 2 1 10 10 C 1.36493 * 126.07081 * 180.02562 * 9 7 2 11 11 C 1.35676 * 107.50768 * 180.02562 * 10 9 7 12 12 N 1.40592 * 126.08157 * 179.97438 * 11 10 9 13 13 C 1.34783 * 120.00336 * 180.02562 * 12 11 10 14 14 O 1.21307 * 119.99548 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00128 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.46950 * 179.97438 * 15 13 12 17 17 H 1.09000 * 109.64125 * 54.57668 * 16 15 13 18 18 C 1.53028 * 109.81442 * 294.04682 * 16 15 13 19 19 C 1.50068 * 110.14332 * 190.77677 * 18 16 15 20 20 C 1.29440 * 124.08015 * 17.13513 * 19 18 16 21 21 C 1.50172 * 124.14460 * 359.75709 * 20 19 18 22 22 C 1.53025 * 110.09423 * 16.71580 * 21 20 19 23 23 C 1.40649 * 107.83836 * 0.26233 * 11 10 9 24 24 N 1.30914 * 108.38490 * 359.54934 * 23 11 10 25 25 H 0.97008 * 119.99828 * 359.97438 * 1 2 3 26 26 H 1.08001 * 126.24059 * 359.97438 * 10 9 7 27 27 H 0.97004 * 120.00454 * 359.97438 * 12 11 10 28 28 H 1.08997 * 109.47283 * 59.99470 * 15 13 12 29 29 H 1.09002 * 109.46985 * 299.99437 * 15 13 12 30 30 H 1.09000 * 109.35968 * 310.98407 * 18 16 15 31 31 H 1.09006 * 109.35777 * 70.57038 * 18 16 15 32 32 H 1.08002 * 117.95885 * 197.11000 * 19 18 16 33 33 H 1.07990 * 117.96474 * 179.55071 * 20 19 18 34 34 H 1.08999 * 109.20532 * 256.63607 * 21 20 19 35 35 H 1.08991 * 109.55695 * 137.02016 * 21 20 19 36 36 H 1.09002 * 109.64203 * 191.09563 * 22 21 20 37 37 H 1.09002 * 109.64069 * 70.67946 * 22 21 20 38 38 H 1.08004 * 125.80664 * 179.70768 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1008 1.6963 -1.2125 5 1 1.2821 2.7464 0.0006 6 1 3.1007 1.6964 1.2126 7 6 2.0078 -1.2037 0.0005 8 1 3.0878 -1.2037 0.0010 9 7 1.3212 -2.3929 0.0005 10 6 1.8748 -3.6405 0.0015 11 6 0.8576 -4.5384 0.0006 12 7 0.9888 -5.9382 0.0006 13 6 -0.1104 -6.7182 -0.0010 14 8 -1.2130 -6.2123 -0.0019 15 6 0.0303 -8.2186 -0.0004 16 6 -1.3584 -8.8610 -0.0018 17 1 -1.9398 -8.4750 -0.8391 18 6 -2.0770 -8.5459 1.3120 19 6 -3.3198 -9.3782 1.4338 20 6 -3.5534 -10.4399 0.7312 21 6 -2.6170 -10.9858 -0.3082 22 6 -1.2219 -10.3836 -0.1271 23 6 -0.3514 -3.8198 -0.0072 24 7 -0.0717 -2.5409 -0.0010 25 1 -0.4850 0.8401 0.0004 26 1 2.9300 -3.8709 0.0021 27 1 1.8704 -6.3428 0.0010 28 1 0.5744 -8.5322 0.8905 29 1 0.5771 -8.5326 -0.8895 30 1 -1.4128 -8.7639 2.1484 31 1 -2.3459 -7.4898 1.3326 32 1 -4.0655 -9.0725 2.1527 33 1 -4.4787 -10.9688 0.9052 34 1 -2.9940 -10.7326 -1.2990 35 1 -2.5578 -12.0699 -0.2125 36 1 -0.6032 -10.6262 -0.9911 37 1 -0.7635 -10.7861 0.7763 38 1 -1.3421 -4.2499 -0.0142 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931192850.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:16 Heat of formation + Delta-G solvation = 24.415653 kcal Electronic energy + Delta-G solvation = -20477.914123 eV Core-core repulsion = 17320.958754 eV Total energy + Delta-G solvation = -3156.955370 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.69797 -40.55348 -38.95176 -35.87107 -34.91107 -33.67492 -32.20841 -31.55353 -29.92474 -28.10912 -26.55644 -24.09556 -23.00805 -22.53148 -21.29154 -21.04509 -19.29162 -18.79043 -17.72098 -17.34375 -17.04374 -16.60058 -16.22804 -15.77996 -15.32609 -15.15462 -14.91963 -14.76797 -14.22078 -13.79783 -13.56460 -13.46077 -13.29722 -13.12474 -12.93376 -12.86104 -12.81572 -12.40078 -12.13868 -11.78149 -11.52913 -11.39190 -10.96986 -10.96203 -10.80530 -10.43668 -10.08482 -9.80048 -8.48178 -8.45963 -6.22998 1.26199 1.39560 1.45790 1.56212 1.60006 1.91295 2.09124 2.39755 2.57612 2.96427 3.09905 3.76396 3.84361 3.94998 4.18673 4.32761 4.44168 4.49422 4.53518 4.63346 4.64119 4.80505 4.82635 4.88322 4.98352 5.01689 5.09657 5.13910 5.17034 5.28856 5.31958 5.43869 5.56163 5.59253 5.83226 5.97461 6.13238 6.35514 6.76033 6.87054 7.46975 7.54612 7.71843 8.53403 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.053295 B = 0.003176 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.248009 B = 8813.999111 C = 9180.865704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.008 4.008 3 Si 1.020 2.980 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.253 1.253 7 C -0.356 4.356 8 H 0.141 0.859 9 N -0.170 5.170 10 C -0.084 4.084 11 C -0.042 4.042 12 N -0.622 5.622 13 C 0.491 3.509 14 O -0.576 6.576 15 C -0.118 4.118 16 C -0.069 4.069 17 H 0.054 0.946 18 C -0.093 4.093 19 C -0.168 4.168 20 C -0.161 4.161 21 C -0.093 4.093 22 C -0.109 4.109 23 C -0.063 4.063 24 N -0.312 5.312 25 H 0.276 0.724 26 H 0.188 0.812 27 H 0.420 0.580 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.574 -19.614 0.275 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.219 4.219 3 Si 0.839 3.161 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.487 4.487 8 H 0.158 0.842 9 N 0.060 4.940 10 C -0.234 4.234 11 C -0.148 4.148 12 N -0.267 5.267 13 C 0.280 3.720 14 O -0.456 6.456 15 C -0.157 4.157 16 C -0.088 4.088 17 H 0.072 0.928 18 C -0.129 4.129 19 C -0.186 4.186 20 C -0.179 4.179 21 C -0.129 4.129 22 C -0.146 4.146 23 C -0.238 4.238 24 N -0.145 5.145 25 H 0.085 0.915 26 H 0.205 0.795 27 H 0.257 0.743 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.126 -17.974 0.282 18.101 hybrid contribution 0.353 0.143 0.151 0.410 sum 2.478 -17.830 0.433 18.007 Atomic orbital electron populations 1.70409 1.08466 1.29082 1.37539 1.26900 0.96471 1.04392 0.94160 0.84644 0.77521 0.73684 0.80289 1.17668 1.20367 1.17693 1.20578 0.92952 0.80961 1.54176 0.84187 1.44832 1.03598 1.04844 1.40680 1.22025 0.98854 0.84250 1.18284 1.17400 0.92572 0.84320 1.20530 1.42617 1.10176 1.02073 1.71874 1.21623 0.83354 0.91086 0.75910 1.90569 1.27616 1.76382 1.51006 1.21751 0.99854 0.87239 1.06889 1.20902 0.94199 0.96206 0.97474 0.92751 1.20559 0.95504 0.99063 0.97822 1.22145 0.98627 0.96975 1.00868 1.22276 1.00400 0.97224 0.98032 1.20530 0.93993 1.00889 0.97521 1.21654 0.97116 0.92479 1.03340 1.24156 0.99088 0.90942 1.09622 1.78135 0.92096 1.16715 1.27507 0.91476 0.79532 0.74324 0.86253 0.85849 0.90719 0.92780 0.88602 0.87218 0.91024 0.89103 0.89563 0.90647 0.81747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.72 11.81 21.66 0.26 -48.47 16 2 C -0.01 -0.42 5.50 84.95 0.47 0.05 16 3 Si 1.02 39.10 29.55 68.60 2.03 41.13 16 4 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 5 H -0.28 -10.61 7.11 99.48 0.71 -9.91 16 6 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 7 C -0.36 -19.13 10.25 84.01 0.86 -18.27 16 8 H 0.14 6.49 7.83 -2.91 -0.02 6.46 16 9 N -0.17 -9.63 3.74 -190.01 -0.71 -10.34 16 10 C -0.08 -3.93 11.49 83.37 0.96 -2.97 16 11 C -0.04 -1.94 6.90 37.73 0.26 -1.68 16 12 N -0.62 -20.79 5.47 -303.92 -1.66 -22.45 16 13 C 0.49 16.09 7.56 87.66 0.66 16.75 16 14 O -0.58 -24.72 11.25 -3.11 -0.04 -24.75 16 15 C -0.12 -2.32 5.18 29.85 0.15 -2.16 16 16 C -0.07 -1.51 1.87 -10.65 -0.02 -1.53 16 17 H 0.05 1.49 7.93 -2.39 -0.02 1.47 16 18 C -0.09 -2.38 5.06 29.66 0.15 -2.23 16 19 C -0.17 -3.92 9.80 27.04 0.27 -3.66 16 20 C -0.16 -3.11 9.80 27.07 0.27 -2.85 16 21 C -0.09 -1.42 6.13 29.69 0.18 -1.24 16 22 C -0.11 -1.60 5.29 30.73 0.16 -1.44 16 23 C -0.06 -3.51 10.85 85.42 0.93 -2.59 16 24 N -0.31 -19.29 10.40 -56.46 -0.59 -19.88 16 25 H 0.28 14.97 8.31 -92.70 -0.77 14.20 16 26 H 0.19 6.83 8.06 -2.91 -0.02 6.81 16 27 H 0.42 9.82 8.83 -92.71 -0.82 9.00 16 28 H 0.12 1.71 8.10 -2.39 -0.02 1.69 16 29 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.72 8.07 -2.39 -0.02 1.70 16 31 H 0.05 1.83 6.31 -2.38 -0.02 1.82 16 32 H 0.10 2.20 8.06 -2.91 -0.02 2.17 16 33 H 0.11 1.80 8.06 -2.92 -0.02 1.78 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 38 H 0.17 9.33 5.92 -2.91 -0.02 9.32 16 Total: -1.00 -77.88 315.40 4.84 -73.04 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: 0.25 Total: 35.54 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 5.30 Total: -23.82 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -2.70 Total: -101.14 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.04 Total: -24.75 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -77.88 4.84 -73.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931192850.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.456 kcal (2) G-P(sol) polarization free energy of solvation -77.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds