Wall clock time and date at job start Mon Mar 30 2020 02:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31289 * 1 3 3 Si 1.86800 * 120.00110 * 2 1 4 4 H 1.48503 * 109.47229 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47505 * 59.99639 * 3 2 1 6 6 H 1.48507 * 109.47126 * 299.99615 * 3 2 1 7 7 C 1.38987 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99666 * 201.12513 * 7 2 1 9 9 N 1.37326 * 120.00093 * 21.11796 * 7 2 1 10 10 C 1.36481 * 126.06919 * 190.06732 * 9 7 2 11 11 C 1.35680 * 107.51002 * 180.02562 * 10 9 7 12 12 N 1.40593 * 126.08450 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00037 * 179.97438 * 12 11 10 14 14 O 1.21308 * 120.00046 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00285 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.47403 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.63522 * 304.57862 * 16 15 13 18 18 C 1.53024 * 109.64350 * 65.00079 * 16 15 13 19 19 C 1.50066 * 110.14766 * 169.12274 * 18 16 15 20 20 C 1.29444 * 124.07675 * 342.86719 * 19 18 16 21 21 C 1.50074 * 124.06998 * 0.49348 * 20 19 18 22 22 C 1.53031 * 110.14221 * 342.82794 * 21 20 19 23 23 C 1.40654 * 107.83318 * 0.02562 * 11 10 9 24 24 N 1.30910 * 108.38371 * 359.71586 * 23 11 10 25 25 H 0.97001 * 120.00356 * 185.89258 * 1 2 3 26 26 H 1.08005 * 126.24805 * 359.97438 * 10 9 7 27 27 H 0.97001 * 120.00320 * 0.02562 * 12 11 10 28 28 H 1.09002 * 109.47053 * 300.00184 * 15 13 12 29 29 H 1.09006 * 109.47084 * 60.00218 * 15 13 12 30 30 H 1.08998 * 109.35608 * 289.33087 * 18 16 15 31 31 H 1.09001 * 109.35739 * 49.05152 * 18 16 15 32 32 H 1.07996 * 117.96241 * 162.89527 * 19 18 16 33 33 H 1.07996 * 117.96570 * 180.47200 * 20 19 18 34 34 H 1.09000 * 109.35792 * 103.05716 * 21 20 19 35 35 H 1.08998 * 109.35189 * 222.77257 * 21 20 19 36 36 H 1.08999 * 109.66331 * 289.77955 * 22 21 20 37 37 H 1.09004 * 109.63462 * 169.14188 * 22 21 20 38 38 H 1.07992 * 125.80472 * 180.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7069 1.3464 0.0006 5 1 1.8882 2.3965 1.2124 6 1 1.8882 2.3964 -1.2126 7 6 2.0078 -1.2037 0.0005 8 1 3.0334 -1.2349 0.3377 9 7 1.3904 -2.3532 -0.4274 10 6 1.8780 -3.6218 -0.3020 11 6 0.9676 -4.4651 -0.8505 12 7 1.0780 -5.8645 -0.9304 13 6 0.0948 -6.5863 -1.5037 14 8 -0.8852 -6.0287 -1.9513 15 6 0.2133 -8.0862 -1.5899 16 6 -1.0269 -8.6570 -2.2806 17 1 -1.9231 -8.3288 -1.7540 18 6 -1.0764 -8.1729 -3.7314 19 6 -2.1277 -8.9264 -4.4922 20 6 -2.6498 -10.0426 -4.0958 21 6 -2.2842 -10.7336 -2.8148 22 6 -0.9567 -10.1893 -2.2826 23 6 -0.1062 -3.6904 -1.3249 24 7 0.1463 -2.4323 -1.0660 25 1 -0.4851 -0.8356 0.0862 26 1 2.8175 -3.9029 0.1505 27 1 1.8614 -6.3105 -0.5722 28 1 1.1017 -8.3480 -2.1647 29 1 0.2944 -8.5025 -0.5858 30 1 -1.3106 -7.1085 -3.7493 31 1 -0.1062 -8.3373 -4.2004 32 1 -2.4697 -8.5119 -5.4290 33 1 -3.3950 -10.5052 -4.7259 34 1 -3.0673 -10.5629 -2.0760 35 1 -2.1865 -11.8038 -2.9968 36 1 -0.1410 -10.5178 -2.9267 37 1 -0.7937 -10.5499 -1.2670 38 1 -0.9909 -4.0696 -1.8146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931192851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:20 Heat of formation + Delta-G solvation = 38.232703 kcal Electronic energy + Delta-G solvation = -20526.276897 eV Core-core repulsion = 17369.920679 eV Total energy + Delta-G solvation = -3156.356218 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17422 -39.28142 -37.91171 -34.36151 -33.24240 -32.72061 -30.78696 -30.21887 -28.39821 -26.73094 -24.57494 -23.26764 -21.79144 -20.90453 -20.04227 -19.46014 -18.09189 -17.89486 -16.41814 -16.13171 -15.68370 -15.04137 -14.75049 -14.35850 -14.05797 -13.82236 -13.64894 -13.34327 -13.17547 -12.77721 -12.60033 -12.36213 -12.05994 -11.86702 -11.62517 -11.47627 -11.09831 -10.73146 -10.57894 -10.39842 -10.29862 -10.18893 -10.05250 -9.38434 -9.15796 -9.09847 -8.91798 -8.23516 -7.00402 -6.82763 -4.28085 2.28558 2.83863 3.14483 3.18623 3.34810 3.56556 3.59844 3.99399 4.23371 4.56161 4.59491 4.67657 4.82876 4.98751 5.10598 5.12942 5.29713 5.31423 5.44453 5.56271 5.62985 5.69382 5.75994 5.78403 5.91047 6.12415 6.15440 6.29400 6.33154 6.42026 6.64177 6.81339 6.90946 6.95544 7.09432 7.53280 7.84316 8.16106 8.32688 8.54495 8.82145 9.26068 9.42720 10.34380 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.051972 B = 0.003191 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.625581 B = 8772.806270 C = 9081.927843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.023 3.977 3 Si 1.090 2.910 4 H -0.279 1.279 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.399 4.399 8 H 0.111 0.889 9 N -0.140 5.140 10 C -0.084 4.084 11 C -0.057 4.057 12 N -0.628 5.628 13 C 0.497 3.503 14 O -0.535 6.535 15 C -0.132 4.132 16 C -0.069 4.069 17 H 0.081 0.919 18 C -0.095 4.095 19 C -0.141 4.141 20 C -0.172 4.172 21 C -0.088 4.088 22 C -0.116 4.116 23 C -0.014 4.014 24 N -0.337 5.337 25 H 0.310 0.690 26 H 0.147 0.853 27 H 0.397 0.603 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.633 -17.856 -2.936 18.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.198 4.198 3 Si 0.913 3.087 4 H -0.204 1.204 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.532 4.532 8 H 0.129 0.871 9 N 0.094 4.906 10 C -0.236 4.236 11 C -0.162 4.162 12 N -0.271 5.271 13 C 0.284 3.716 14 O -0.412 6.412 15 C -0.172 4.172 16 C -0.088 4.088 17 H 0.100 0.900 18 C -0.132 4.132 19 C -0.159 4.159 20 C -0.190 4.190 21 C -0.125 4.125 22 C -0.153 4.153 23 C -0.187 4.187 24 N -0.171 5.171 25 H 0.126 0.874 26 H 0.164 0.836 27 H 0.230 0.770 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.237 -14.651 -3.423 15.048 hybrid contribution 0.997 -2.908 0.300 3.089 sum 1.233 -17.560 -3.124 17.878 Atomic orbital electron populations 1.70279 1.07466 1.35533 1.29415 1.26763 0.96271 1.02699 0.94019 0.83236 0.74506 0.72984 0.77955 1.20405 1.20447 1.20067 1.20907 0.99212 0.85041 1.48035 0.87126 1.44641 1.11178 1.04068 1.30679 1.21273 1.02117 0.85079 1.15096 1.17217 0.99847 0.82098 1.17031 1.42596 1.21509 1.04962 1.58018 1.20490 0.82995 0.89215 0.78891 1.90553 1.30998 1.72202 1.47446 1.21704 1.00438 0.92383 1.02711 1.20929 0.97638 0.93986 0.96240 0.90044 1.20675 0.97305 1.01662 0.93522 1.22146 0.98191 0.95848 0.99712 1.21971 1.01348 0.97381 0.98304 1.20403 0.97461 0.99109 0.95493 1.21684 0.97506 0.95212 1.00941 1.23827 0.99987 0.89606 1.05294 1.77466 0.99527 1.18800 1.21340 0.87402 0.83559 0.76998 0.89290 0.89203 0.88579 0.91513 0.88277 0.88452 0.91069 0.91441 0.91784 0.91690 0.80384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -23.32 13.25 55.49 0.74 -22.58 16 2 C 0.02 0.61 5.38 -17.51 -0.09 0.52 16 3 Si 1.09 22.29 29.97 -169.99 -5.09 17.20 16 4 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.40 -10.79 10.12 -14.81 -0.15 -10.94 16 8 H 0.11 2.72 7.92 -52.49 -0.42 2.31 16 9 N -0.14 -3.85 3.64 -11.41 -0.04 -3.90 16 10 C -0.08 -2.00 11.49 -16.40 -0.19 -2.19 16 11 C -0.06 -1.29 6.90 -83.84 -0.58 -1.87 16 12 N -0.63 -10.83 5.47 -10.00 -0.05 -10.88 16 13 C 0.50 8.19 7.55 -10.99 -0.08 8.10 16 14 O -0.53 -10.80 11.18 5.53 0.06 -10.74 16 15 C -0.13 -1.47 5.18 -27.88 -0.14 -1.61 16 16 C -0.07 -0.80 1.88 -90.40 -0.17 -0.97 16 17 H 0.08 1.10 7.96 -51.93 -0.41 0.69 16 18 C -0.09 -1.19 5.03 -28.18 -0.14 -1.34 16 19 C -0.14 -1.62 9.80 -35.90 -0.35 -1.97 16 20 C -0.17 -1.77 9.80 -35.90 -0.35 -2.12 16 21 C -0.09 -0.79 6.12 -28.17 -0.17 -0.96 16 22 C -0.12 -1.04 5.31 -26.51 -0.14 -1.18 16 23 C -0.01 -0.37 10.85 -17.03 -0.18 -0.56 16 24 N -0.34 -9.70 9.70 30.80 0.30 -9.40 16 25 H 0.31 9.49 6.35 -40.82 -0.26 9.23 16 26 H 0.15 2.93 8.06 -52.48 -0.42 2.50 16 27 H 0.40 5.22 8.83 -40.82 -0.36 4.86 16 28 H 0.09 0.82 8.11 -51.93 -0.42 0.40 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 1.49 6.22 -51.93 -0.32 1.17 16 31 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.10 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.10 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.18 4.56 5.92 -52.49 -0.31 4.25 16 LS Contribution 314.20 15.07 4.73 4.73 Total: -1.00 -32.83 314.20 -7.21 -40.04 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -5.10 Total: 12.61 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -2.75 Total: -17.09 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.94 Total: -46.76 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.06 Total: -10.74 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.09 Total: 17.20 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.83 -7.21 -40.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931192851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.277 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds