Wall clock time and date at job start Mon Mar 30 2020 02:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31289 * 1 3 3 Si 1.86800 * 120.00110 * 2 1 4 4 H 1.48503 * 109.47229 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47505 * 59.99639 * 3 2 1 6 6 H 1.48507 * 109.47126 * 299.99615 * 3 2 1 7 7 C 1.38987 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99666 * 201.12513 * 7 2 1 9 9 N 1.37326 * 120.00093 * 21.11796 * 7 2 1 10 10 C 1.36481 * 126.06919 * 190.06732 * 9 7 2 11 11 C 1.35680 * 107.51002 * 180.02562 * 10 9 7 12 12 N 1.40593 * 126.08450 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00037 * 179.97438 * 12 11 10 14 14 O 1.21308 * 120.00046 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00285 * 179.97438 * 13 12 11 16 16 C 1.53003 * 109.47403 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.63522 * 304.57862 * 16 15 13 18 18 C 1.53024 * 109.64350 * 65.00079 * 16 15 13 19 19 C 1.50066 * 110.14766 * 169.12274 * 18 16 15 20 20 C 1.29444 * 124.07675 * 342.86719 * 19 18 16 21 21 C 1.50074 * 124.06998 * 0.49348 * 20 19 18 22 22 C 1.53031 * 110.14221 * 342.82794 * 21 20 19 23 23 C 1.40654 * 107.83318 * 0.02562 * 11 10 9 24 24 N 1.30910 * 108.38371 * 359.71586 * 23 11 10 25 25 H 0.97001 * 120.00356 * 185.89258 * 1 2 3 26 26 H 1.08005 * 126.24805 * 359.97438 * 10 9 7 27 27 H 0.97001 * 120.00320 * 0.02562 * 12 11 10 28 28 H 1.09002 * 109.47053 * 300.00184 * 15 13 12 29 29 H 1.09006 * 109.47084 * 60.00218 * 15 13 12 30 30 H 1.08998 * 109.35608 * 289.33087 * 18 16 15 31 31 H 1.09001 * 109.35739 * 49.05152 * 18 16 15 32 32 H 1.07996 * 117.96241 * 162.89527 * 19 18 16 33 33 H 1.07996 * 117.96570 * 180.47200 * 20 19 18 34 34 H 1.09000 * 109.35792 * 103.05716 * 21 20 19 35 35 H 1.08998 * 109.35189 * 222.77257 * 21 20 19 36 36 H 1.08999 * 109.66331 * 289.77955 * 22 21 20 37 37 H 1.09004 * 109.63462 * 169.14188 * 22 21 20 38 38 H 1.07992 * 125.80472 * 180.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7069 1.3464 0.0006 5 1 1.8882 2.3965 1.2124 6 1 1.8882 2.3964 -1.2126 7 6 2.0078 -1.2037 0.0005 8 1 3.0334 -1.2349 0.3377 9 7 1.3904 -2.3532 -0.4274 10 6 1.8780 -3.6218 -0.3020 11 6 0.9676 -4.4651 -0.8505 12 7 1.0780 -5.8645 -0.9304 13 6 0.0948 -6.5863 -1.5037 14 8 -0.8852 -6.0287 -1.9513 15 6 0.2133 -8.0862 -1.5899 16 6 -1.0269 -8.6570 -2.2806 17 1 -1.9231 -8.3288 -1.7540 18 6 -1.0764 -8.1729 -3.7314 19 6 -2.1277 -8.9264 -4.4922 20 6 -2.6498 -10.0426 -4.0958 21 6 -2.2842 -10.7336 -2.8148 22 6 -0.9567 -10.1893 -2.2826 23 6 -0.1062 -3.6904 -1.3249 24 7 0.1463 -2.4323 -1.0660 25 1 -0.4851 -0.8356 0.0862 26 1 2.8175 -3.9029 0.1505 27 1 1.8614 -6.3105 -0.5722 28 1 1.1017 -8.3480 -2.1647 29 1 0.2944 -8.5025 -0.5858 30 1 -1.3106 -7.1085 -3.7493 31 1 -0.1062 -8.3373 -4.2004 32 1 -2.4697 -8.5119 -5.4290 33 1 -3.3950 -10.5052 -4.7259 34 1 -3.0673 -10.5629 -2.0760 35 1 -2.1865 -11.8038 -2.9968 36 1 -0.1410 -10.5178 -2.9267 37 1 -0.7937 -10.5499 -1.2670 38 1 -0.9909 -4.0696 -1.8146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931192851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:20 Heat of formation + Delta-G solvation = 17.459730 kcal Electronic energy + Delta-G solvation = -20527.177681 eV Core-core repulsion = 17369.920679 eV Total energy + Delta-G solvation = -3157.257001 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.91092 -40.68519 -39.01388 -36.09642 -35.00661 -33.70835 -32.23884 -31.57591 -30.00253 -28.03837 -26.49527 -24.13074 -23.07592 -22.64423 -21.42770 -21.17540 -19.83511 -18.83608 -17.86196 -17.51965 -16.88762 -16.49528 -16.31232 -15.63695 -15.56715 -15.30032 -15.09187 -14.95722 -14.27117 -13.81771 -13.80535 -13.59725 -13.40132 -13.15061 -12.93009 -12.81787 -12.43459 -12.17254 -11.88208 -11.77234 -11.56139 -11.42499 -11.38122 -11.01382 -10.99052 -10.51711 -10.29804 -9.82076 -9.06277 -8.65356 -6.35400 1.17493 1.43621 1.52079 1.59062 1.78489 1.83294 2.07196 2.40298 2.41675 2.75972 3.01810 3.72452 3.80890 3.90902 4.14287 4.28159 4.32685 4.42618 4.46230 4.51163 4.60723 4.76932 4.79709 4.85201 4.91381 4.95873 5.03129 5.07352 5.13088 5.25989 5.38980 5.44264 5.54320 5.55925 5.81047 5.84389 6.11096 6.36943 6.55954 6.76899 7.25803 7.40297 7.51616 8.24391 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.051972 B = 0.003191 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.625581 B = 8772.806270 C = 9081.927843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C -0.021 4.021 3 Si 1.145 2.855 4 H -0.247 1.247 5 H -0.268 1.268 6 H -0.279 1.279 7 C -0.427 4.427 8 H 0.133 0.867 9 N -0.170 5.170 10 C -0.078 4.078 11 C -0.037 4.037 12 N -0.622 5.622 13 C 0.493 3.507 14 O -0.575 6.575 15 C -0.118 4.118 16 C -0.069 4.069 17 H 0.055 0.945 18 C -0.093 4.093 19 C -0.168 4.168 20 C -0.161 4.161 21 C -0.093 4.093 22 C -0.108 4.108 23 C -0.040 4.040 24 N -0.379 5.379 25 H 0.288 0.712 26 H 0.188 0.812 27 H 0.421 0.579 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.988 -20.598 -2.285 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.233 4.233 3 Si 0.960 3.040 4 H -0.170 1.170 5 H -0.193 1.193 6 H -0.205 1.205 7 C -0.558 4.558 8 H 0.150 0.850 9 N 0.062 4.938 10 C -0.229 4.229 11 C -0.143 4.143 12 N -0.268 5.268 13 C 0.282 3.718 14 O -0.454 6.454 15 C -0.158 4.158 16 C -0.088 4.088 17 H 0.073 0.927 18 C -0.130 4.130 19 C -0.187 4.187 20 C -0.179 4.179 21 C -0.130 4.130 22 C -0.146 4.146 23 C -0.213 4.213 24 N -0.214 5.214 25 H 0.102 0.898 26 H 0.205 0.795 27 H 0.258 0.742 28 H 0.138 0.862 29 H 0.142 0.858 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.628 -17.453 -2.756 17.864 hybrid contribution 0.193 -2.315 0.038 2.323 sum 2.821 -19.768 -2.719 20.153 Atomic orbital electron populations 1.70407 1.08915 1.34057 1.33672 1.28571 0.96113 1.06643 0.91998 0.82633 0.74855 0.68478 0.77998 1.17018 1.19313 1.20510 1.21441 1.00160 0.85453 1.48728 0.85002 1.44887 1.11252 1.05498 1.32119 1.22054 1.03233 0.83960 1.13642 1.17335 0.97917 0.84808 1.14269 1.42627 1.23050 1.02508 1.58593 1.21650 0.81704 0.91475 0.76964 1.90562 1.32692 1.73537 1.48637 1.21763 1.01415 0.87415 1.05172 1.20915 0.96800 0.96210 0.94874 0.92683 1.20580 0.98047 0.99421 0.94966 1.22152 0.99361 0.96915 1.00235 1.22264 1.00303 0.96595 0.98765 1.20518 0.97612 1.00253 0.94585 1.21662 0.97843 0.92509 1.02559 1.23948 1.01116 0.89868 1.06393 1.77388 1.01023 1.20371 1.22570 0.89838 0.79468 0.74177 0.86152 0.85825 0.92620 0.90760 0.88622 0.87217 0.90963 0.89165 0.90618 0.89523 0.81047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -51.25 13.25 21.66 0.29 -50.97 16 2 C -0.02 -1.16 5.38 84.95 0.46 -0.70 16 3 Si 1.15 44.64 29.97 68.60 2.06 46.70 16 4 H -0.25 -8.26 7.11 99.48 0.71 -7.55 16 5 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 6 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.43 -23.19 10.12 84.01 0.85 -22.34 16 8 H 0.13 6.33 7.92 -2.91 -0.02 6.31 16 9 N -0.17 -9.50 3.64 -190.01 -0.69 -10.19 16 10 C -0.08 -3.61 11.49 83.38 0.96 -2.65 16 11 C -0.04 -1.68 6.90 37.73 0.26 -1.42 16 12 N -0.62 -20.12 5.47 -303.92 -1.66 -21.78 16 13 C 0.49 15.57 7.55 87.66 0.66 16.23 16 14 O -0.57 -23.83 11.18 -3.12 -0.03 -23.86 16 15 C -0.12 -2.22 5.18 29.85 0.15 -2.07 16 16 C -0.07 -1.46 1.88 -10.65 -0.02 -1.48 16 17 H 0.05 1.46 7.96 -2.39 -0.02 1.44 16 18 C -0.09 -2.33 5.03 29.66 0.15 -2.18 16 19 C -0.17 -3.84 9.80 27.04 0.27 -3.58 16 20 C -0.16 -3.04 9.80 27.04 0.27 -2.77 16 21 C -0.09 -1.38 6.12 29.66 0.18 -1.20 16 22 C -0.11 -1.54 5.31 30.74 0.16 -1.38 16 23 C -0.04 -2.17 10.85 85.42 0.93 -1.24 16 24 N -0.38 -22.74 9.70 -56.47 -0.55 -23.29 16 25 H 0.29 18.68 6.35 -92.71 -0.59 18.09 16 26 H 0.19 6.87 8.06 -2.91 -0.02 6.85 16 27 H 0.42 9.49 8.83 -92.71 -0.82 8.67 16 28 H 0.12 1.62 8.11 -2.39 -0.02 1.60 16 29 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.06 1.84 6.22 -2.39 -0.01 1.82 16 31 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 32 H 0.10 2.15 8.06 -2.91 -0.02 2.12 16 33 H 0.11 1.76 8.06 -2.91 -0.02 1.74 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 0.95 8.12 -2.39 -0.02 0.93 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.17 9.34 5.92 -2.91 -0.02 9.32 16 Total: -1.00 -77.24 314.20 5.11 -72.13 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: 0.43 Total: 38.04 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 5.27 Total: -26.77 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -2.61 Total: -106.23 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.03 Total: -23.86 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.06 Total: 46.70 kcal Total: -77.24 5.11 -72.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931192851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.589 kcal (2) G-P(sol) polarization free energy of solvation -77.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds