Wall clock time and date at job start Mon Mar 30 2020 01:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86790 * 120.00045 * 2 1 4 4 H 1.48505 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47178 * 299.99980 * 3 2 1 6 6 H 1.48503 * 109.47472 * 59.99863 * 3 2 1 7 7 C 1.38952 * 119.99404 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99326 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00582 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00363 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99725 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00473 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47369 * 180.02562 * 12 10 9 14 14 C 1.46894 * 110.99827 * 185.15325 * 13 12 10 15 15 H 1.09005 * 109.47678 * 321.59546 * 14 13 12 16 16 C 1.50699 * 109.47290 * 81.59577 * 14 13 12 17 17 C 1.38225 * 119.62140 * 244.99712 * 16 14 13 18 18 C 1.38628 * 119.16022 * 180.02562 * 17 16 14 19 19 C 1.38668 * 118.42428 * 359.97438 * 18 17 16 20 20 C 1.38192 * 119.16070 * 0.27848 * 19 18 17 21 21 N 1.31859 * 119.61721 * 65.02049 * 16 14 13 22 22 C 1.53006 * 109.47179 * 201.59682 * 14 13 12 23 23 C 1.52997 * 117.49795 * 134.39080 * 22 14 13 24 24 C 1.52998 * 117.49653 * 65.73158 * 22 14 13 25 25 H 0.97000 * 119.99580 * 359.97438 * 1 2 3 26 26 H 0.96999 * 119.99814 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47187 * 59.99732 * 12 10 9 28 28 H 1.09001 * 109.46855 * 300.00443 * 12 10 9 29 29 H 1.00896 * 110.99668 * 61.19813 * 13 12 10 30 30 H 1.07992 * 120.41982 * 0.02562 * 17 16 14 31 31 H 1.07998 * 120.78953 * 180.02562 * 18 17 16 32 32 H 1.07995 * 120.42289 * 180.02562 * 19 18 17 33 33 H 1.08001 * 119.61455 * 179.69846 * 20 19 18 34 34 H 1.08993 * 115.54668 * 280.06430 * 22 14 13 35 35 H 1.09006 * 117.50424 * 0.02562 * 23 22 14 36 36 H 1.09006 * 117.49691 * 145.02166 * 23 22 14 37 37 H 1.08998 * 117.49984 * 214.97902 * 24 22 14 38 38 H 1.09000 * 117.49937 * 359.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0022 13 7 2.1983 -5.9796 -0.0027 14 6 1.5022 -7.2672 -0.1264 15 1 0.5793 -7.2386 0.4530 16 6 1.1777 -7.5256 -1.5752 17 6 -0.1426 -7.5789 -1.9807 18 6 -0.4302 -7.8178 -3.3156 19 6 0.6258 -7.9945 -4.1969 20 6 1.9204 -7.9328 -3.7175 21 7 2.1568 -7.6989 -2.4414 22 6 2.4018 -8.3862 0.4023 23 6 1.7676 -9.4225 1.3322 24 6 2.7351 -8.3786 1.8955 25 1 -0.4849 0.8401 0.0004 26 1 0.3534 -2.3906 -0.0005 27 1 0.6167 -4.9201 -0.8919 28 1 0.6174 -4.9213 0.8880 29 1 2.7782 -5.9598 0.8228 30 1 -0.9401 -7.4362 -1.2666 31 1 -1.4523 -7.8644 -3.6612 32 1 0.4388 -8.1820 -5.2439 33 1 2.7483 -8.0742 -4.3966 34 1 3.1746 -8.7320 -0.2841 35 1 0.7094 -9.3074 1.5670 36 1 2.1235 -10.4501 1.2578 37 1 3.7271 -8.7198 2.1915 38 1 2.3139 -7.5762 2.5011 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932383532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:13 Heat of formation + Delta-G solvation = 28.257744 kcal Electronic energy + Delta-G solvation = -20583.274293 eV Core-core repulsion = 17426.485529 eV Total energy + Delta-G solvation = -3156.788764 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29318 -38.37053 -37.62485 -34.63847 -33.74461 -32.37419 -31.42438 -31.11043 -27.82747 -25.41463 -23.88367 -23.40751 -22.33170 -22.26909 -20.12711 -19.14161 -17.83647 -17.13143 -16.42865 -16.10062 -15.84013 -15.10531 -14.93706 -14.52648 -14.27186 -14.14343 -13.68090 -13.36519 -13.21233 -13.05856 -12.87337 -12.23165 -11.70795 -11.62405 -11.58461 -11.47274 -11.17964 -11.01691 -10.40224 -10.31896 -10.27042 -10.17402 -9.79704 -9.47751 -9.24699 -8.96548 -8.41632 -7.97963 -7.90960 -6.38061 -3.78422 1.14550 1.35773 3.18983 3.29114 3.36861 3.62462 3.87324 3.96258 4.13913 4.27695 4.38035 4.70917 4.79538 4.86223 4.97305 5.01892 5.08827 5.17968 5.22825 5.26921 5.34653 5.52475 5.55372 5.64648 5.74716 5.82307 5.83320 5.97832 6.03101 6.11337 6.18007 6.26682 6.33475 6.73201 7.24638 7.59190 7.72124 8.10948 8.17474 8.66199 9.22446 9.58945 10.11167 10.80036 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018762 B = 0.004273 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.047728 B = 6551.292131 C = 7397.698497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.444 3.556 11 O -0.577 6.577 12 C 0.050 3.950 13 N -0.649 5.649 14 C 0.168 3.832 15 H 0.054 0.946 16 C 0.154 3.846 17 C -0.173 4.173 18 C -0.076 4.076 19 C -0.182 4.182 20 C 0.099 3.901 21 N -0.452 5.452 22 C -0.140 4.140 23 C -0.179 4.179 24 C -0.177 4.177 25 H 0.270 0.730 26 H 0.391 0.609 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.355 0.645 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.153 0.847 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.649 -18.432 -2.299 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.204 5.204 10 C 0.230 3.770 11 O -0.461 6.461 12 C -0.083 4.083 13 N -0.282 5.282 14 C 0.057 3.943 15 H 0.072 0.928 16 C 0.015 3.985 17 C -0.193 4.193 18 C -0.103 4.103 19 C -0.202 4.202 20 C -0.059 4.059 21 N -0.161 5.161 22 C -0.158 4.158 23 C -0.217 4.217 24 C -0.215 4.215 25 H 0.080 0.920 26 H 0.224 0.776 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.177 0.823 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.170 0.830 34 H 0.137 0.863 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.937 -18.152 -2.659 18.448 hybrid contribution -1.659 0.847 0.378 1.900 sum -3.596 -17.306 -2.281 17.822 Atomic orbital electron populations 1.69628 1.05929 1.27942 1.51046 1.25250 0.95630 0.99669 0.97477 0.85805 0.79746 0.81178 0.77657 1.19208 1.20788 1.20792 1.19757 0.93398 0.82232 1.47214 0.87890 1.41862 1.09131 1.04590 1.64793 1.19757 0.88401 0.84578 0.84298 1.90532 1.13681 1.87008 1.54846 1.21729 0.94312 0.91381 1.00867 1.59823 1.21768 0.98784 1.47857 1.19885 0.95124 0.89556 0.89696 0.92809 1.21051 0.88521 0.93510 0.95457 1.21974 0.97618 1.02720 0.96989 1.21500 0.99624 0.95983 0.93146 1.22117 0.94232 1.03002 1.00826 1.22811 0.95912 0.94889 0.92271 1.67457 1.36424 1.09563 1.02624 1.22307 1.02114 0.98353 0.93047 1.23017 0.98758 0.95487 1.04439 1.22956 1.00663 1.01817 0.96037 0.92011 0.77568 0.90063 0.93890 0.82333 0.85170 0.85091 0.85146 0.82988 0.86329 0.88928 0.88787 0.88393 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.99 13.05 55.50 0.72 -24.27 16 2 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 3 Si 0.93 21.44 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.30 -8.47 9.68 -14.94 -0.14 -8.62 16 8 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 9 N -0.57 -14.80 5.29 -10.97 -0.06 -14.86 16 10 C 0.44 10.94 7.83 -10.99 -0.09 10.85 16 11 O -0.58 -16.35 15.89 5.55 0.09 -16.26 16 12 C 0.05 0.93 5.95 -4.98 -0.03 0.90 16 13 N -0.65 -11.33 5.82 -109.22 -0.64 -11.97 16 14 C 0.17 2.33 2.49 -68.86 -0.17 2.16 16 15 H 0.05 0.67 7.45 -51.93 -0.39 0.28 16 16 C 0.15 2.21 5.29 -82.59 -0.44 1.78 16 17 C -0.17 -2.10 9.71 -39.44 -0.38 -2.49 16 18 C -0.08 -0.82 10.18 -39.28 -0.40 -1.22 16 19 C -0.18 -1.95 10.11 -39.44 -0.40 -2.35 16 20 C 0.10 1.25 11.18 -17.55 -0.20 1.06 16 21 N -0.45 -7.00 9.79 -9.47 -0.09 -7.09 16 22 C -0.14 -1.71 5.11 -90.62 -0.46 -2.18 16 23 C -0.18 -1.75 10.18 -26.70 -0.27 -2.02 16 24 C -0.18 -1.90 9.59 -26.70 -0.26 -2.15 16 25 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 27 H 0.08 1.47 7.78 -51.93 -0.40 1.07 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.36 6.23 7.71 -39.29 -0.30 5.93 16 30 H 0.13 1.31 7.95 -52.49 -0.42 0.89 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.12 1.62 7.80 -51.93 -0.41 1.21 16 35 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.09 1.01 8.12 -51.93 -0.42 0.59 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -33.36 330.38 -8.48 -41.84 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -5.13 Total: 15.01 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -3.33 Total: -3.81 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.06 Total: -58.18 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.09 Total: -16.26 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.36 -8.48 -41.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932383532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.100 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds