Wall clock time and date at job start Mon Mar 30 2020 01:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99940 * 2 1 4 4 H 1.48496 * 109.46725 * 239.99356 * 3 2 1 5 5 H 1.48499 * 109.47007 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46831 * 119.99624 * 3 2 1 7 7 C 1.38949 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00217 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99631 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00369 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99867 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47386 * 179.97438 * 12 10 9 14 14 C 1.46902 * 111.00038 * 176.96677 * 13 12 10 15 15 H 1.09008 * 109.47022 * 32.43533 * 14 13 12 16 16 C 1.50697 * 109.47388 * 272.43128 * 14 13 12 17 17 C 1.38227 * 119.61623 * 7.40380 * 16 14 13 18 18 C 1.38626 * 119.16178 * 179.75319 * 17 16 14 19 19 C 1.38670 * 118.41951 * 0.51057 * 18 17 16 20 20 C 1.38184 * 119.16175 * 359.72935 * 19 18 17 21 21 N 1.31853 * 119.61954 * 187.67506 * 16 14 13 22 22 C 1.53002 * 109.46710 * 152.42814 * 14 13 12 23 23 C 1.52999 * 117.49636 * 226.03793 * 22 14 13 24 24 C 1.52991 * 117.50280 * 294.70500 * 22 14 13 25 25 H 0.96996 * 119.99918 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00253 * 359.97438 * 9 7 2 27 27 H 1.08999 * 109.47171 * 59.99818 * 12 10 9 28 28 H 1.09003 * 109.46902 * 299.99684 * 12 10 9 29 29 H 1.00893 * 110.99837 * 53.01302 * 13 12 10 30 30 H 1.08002 * 120.42061 * 359.97438 * 17 16 14 31 31 H 1.08000 * 120.79286 * 180.26270 * 18 17 16 32 32 H 1.07998 * 120.42294 * 179.71283 * 19 18 17 33 33 H 1.08001 * 119.61842 * 180.02562 * 20 19 18 34 34 H 1.09007 * 115.54388 * 80.37793 * 22 14 13 35 35 H 1.09009 * 117.49630 * 215.00293 * 23 22 14 36 36 H 1.08994 * 117.50436 * 0.03778 * 23 22 14 37 37 H 1.09001 * 117.49943 * 359.97438 * 24 22 14 38 38 H 1.09000 * 117.49844 * 144.97853 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5578 0.0001 12 6 1.2437 -4.8629 0.0000 13 7 2.1983 -5.9795 -0.0005 14 6 1.4994 -7.2697 0.0714 15 1 0.5422 -7.1936 -0.4446 16 6 1.2645 -7.6339 1.5147 17 6 1.5575 -6.7173 2.5070 18 6 1.3330 -7.0604 3.8312 19 6 0.8299 -8.3222 4.1099 20 6 0.5657 -9.1875 3.0654 21 7 0.7870 -8.8253 1.8168 22 6 2.3535 -8.3501 -0.5949 23 6 1.6545 -9.3050 -1.5646 24 6 2.6007 -8.2272 -2.0997 25 1 -0.4850 0.8400 -0.0004 26 1 0.3533 -2.3906 0.0005 27 1 0.6174 -4.9205 -0.8903 28 1 0.6168 -4.9209 0.8897 29 1 2.8640 -5.8864 0.7519 30 1 1.9530 -5.7448 2.2536 31 1 1.5485 -6.3630 4.6273 32 1 0.6472 -8.6250 5.1303 33 1 0.1734 -10.1719 3.2740 34 1 3.1603 -8.7549 0.0164 35 1 2.0014 -10.3381 -1.5915 36 1 0.5863 -9.1632 -1.7284 37 1 2.1545 -7.3768 -2.6152 38 1 3.5701 -8.5508 -2.4785 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932383533.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:16 Heat of formation + Delta-G solvation = 11.689178 kcal Electronic energy + Delta-G solvation = -20649.607587 eV Core-core repulsion = 17492.100356 eV Total energy + Delta-G solvation = -3157.507231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.50706 -40.12851 -38.62317 -36.33523 -35.71150 -33.49191 -33.28883 -32.04873 -29.23155 -27.13688 -25.37698 -24.28808 -23.29803 -23.00288 -21.52767 -20.95033 -19.91750 -18.48880 -17.78882 -17.24178 -16.82341 -16.66394 -16.20298 -16.08808 -15.75670 -15.60456 -15.15002 -14.70749 -14.51968 -14.24765 -13.95056 -13.50716 -13.32557 -13.24051 -12.86728 -12.67287 -12.44505 -12.34137 -12.23728 -12.12600 -11.51367 -11.14264 -10.99736 -10.80512 -10.44635 -10.34049 -10.03870 -10.01323 -9.45259 -8.47252 -5.96342 0.11198 0.31943 1.39543 1.41930 1.52789 2.02053 2.27559 2.65126 2.81982 3.10498 3.19821 3.34352 3.53074 3.68191 3.93827 3.97611 4.10074 4.16570 4.24753 4.26985 4.32449 4.36612 4.46917 4.51144 4.67304 4.71282 4.78124 4.91413 5.09530 5.17989 5.25310 5.35591 5.39914 5.40499 5.73422 5.82289 6.03597 6.24367 6.57989 7.02832 7.10958 7.53624 8.08354 8.69881 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020431 B = 0.004204 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.156462 B = 6658.160086 C = 7585.800283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.080 0.920 9 N -0.571 5.571 10 C 0.440 3.560 11 O -0.621 6.621 12 C 0.061 3.939 13 N -0.659 5.659 14 C 0.172 3.828 15 H 0.096 0.904 16 C 0.095 3.905 17 C -0.197 4.197 18 C -0.076 4.076 19 C -0.171 4.171 20 C 0.092 3.908 21 N -0.487 5.487 22 C -0.133 4.133 23 C -0.151 4.151 24 C -0.167 4.167 25 H 0.278 0.722 26 H 0.396 0.604 27 H 0.105 0.895 28 H 0.062 0.938 29 H 0.347 0.653 30 H 0.120 0.880 31 H 0.151 0.849 32 H 0.167 0.833 33 H 0.186 0.814 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.477 -17.851 5.486 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.098 0.902 9 N -0.208 5.208 10 C 0.227 3.773 11 O -0.507 6.507 12 C -0.071 4.071 13 N -0.292 5.292 14 C 0.061 3.939 15 H 0.114 0.886 16 C -0.044 4.044 17 C -0.217 4.217 18 C -0.102 4.102 19 C -0.190 4.190 20 C -0.066 4.066 21 N -0.196 5.196 22 C -0.152 4.152 23 C -0.189 4.189 24 C -0.204 4.204 25 H 0.087 0.913 26 H 0.230 0.770 27 H 0.123 0.877 28 H 0.080 0.920 29 H 0.168 0.832 30 H 0.137 0.863 31 H 0.168 0.832 32 H 0.185 0.815 33 H 0.202 0.798 34 H 0.107 0.893 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.928 -18.253 4.119 18.812 hybrid contribution -0.131 1.754 1.638 2.403 sum -2.059 -16.499 5.757 17.596 Atomic orbital electron populations 1.69668 1.06868 1.29408 1.50121 1.26036 0.96510 1.02397 0.96140 0.84994 0.77773 0.76623 0.78990 1.19739 1.19492 1.19603 1.19644 0.92751 0.83936 1.50112 0.90187 1.41911 1.09318 1.04690 1.64835 1.20675 0.88170 0.85925 0.82496 1.90499 1.15658 1.87852 1.56692 1.21667 0.94226 0.88293 1.02954 1.60335 1.16070 0.99606 1.53174 1.19998 0.96898 0.87894 0.89076 0.88587 1.22104 0.94945 0.90166 0.97138 1.22090 1.03521 1.01146 0.94987 1.21892 0.94715 0.97406 0.96192 1.22504 1.00019 0.94051 1.02469 1.23389 0.95030 1.00900 0.87246 1.67490 1.12200 1.16903 1.23053 1.21753 1.01692 0.99265 0.92503 1.22962 0.98491 0.95732 1.01680 1.22836 1.01250 1.00988 0.95352 0.91262 0.77013 0.87681 0.92010 0.83184 0.86251 0.83166 0.81503 0.79753 0.89277 0.87730 0.88581 0.89514 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.59 13.05 21.66 0.28 -49.31 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 0.99 42.79 29.55 68.60 2.03 44.81 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -29.34 5.29 -306.98 -1.62 -30.97 16 10 C 0.44 20.99 7.81 87.66 0.68 21.68 16 11 O -0.62 -34.35 15.71 -3.06 -0.05 -34.39 16 12 C 0.06 2.15 5.28 85.56 0.45 2.60 16 13 N -0.66 -21.87 5.71 -499.44 -2.85 -24.72 16 14 C 0.17 4.75 2.64 44.17 0.12 4.86 16 15 H 0.10 2.59 7.60 -2.38 -0.02 2.57 16 16 C 0.10 2.57 6.14 42.55 0.26 2.83 16 17 C -0.20 -5.29 8.20 22.36 0.18 -5.11 16 18 C -0.08 -1.62 10.18 22.47 0.23 -1.40 16 19 C -0.17 -2.90 10.11 22.36 0.23 -2.68 16 20 C 0.09 1.73 11.18 84.67 0.95 2.68 16 21 N -0.49 -12.06 9.96 -183.89 -1.83 -13.90 16 22 C -0.13 -3.39 5.05 -10.80 -0.05 -3.44 16 23 C -0.15 -3.17 10.18 30.62 0.31 -2.86 16 24 C -0.17 -4.03 10.21 30.62 0.31 -3.72 16 25 H 0.28 14.06 8.31 -92.71 -0.77 13.28 16 26 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 27 H 0.11 3.39 8.11 -2.39 -0.02 3.37 16 28 H 0.06 2.00 6.86 -2.39 -0.02 1.98 16 29 H 0.35 12.30 6.21 -89.70 -0.56 11.74 16 30 H 0.12 3.61 5.26 -2.91 -0.02 3.59 16 31 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 32 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 33 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 34 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 35 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.10 1.93 8.08 -2.39 -0.02 1.92 16 37 H 0.09 2.29 8.14 -2.39 -0.02 2.28 16 38 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -67.10 324.98 0.71 -66.39 By element: Atomic # 1 Polarization: 45.13 SS G_CDS: -0.20 Total: 44.93 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 4.95 Total: -2.85 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -6.02 Total: -118.89 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -0.05 Total: -34.39 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -67.10 0.71 -66.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932383533.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.074 kcal (2) G-P(sol) polarization free energy of solvation -67.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds