Wall clock time and date at job start Mon Mar 30 2020 02:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86805 * 119.99949 * 2 1 4 4 H 1.48498 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47186 * 299.99850 * 3 2 1 6 6 H 1.48498 * 109.47174 * 59.99942 * 3 2 1 7 7 C 1.40029 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00311 * 179.97438 * 7 2 1 9 9 C 1.41328 * 119.99695 * 359.97438 * 7 2 1 10 10 C 1.40616 * 119.78721 * 180.25527 * 9 7 2 11 11 C 1.38315 * 119.12585 * 180.27261 * 10 9 7 12 12 C 1.38682 * 118.67329 * 359.47578 * 11 10 9 13 13 C 1.39645 * 119.49761 * 0.28124 * 12 11 10 14 14 N 1.39250 * 119.57653 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00075 * 338.02411 * 14 13 12 16 16 O 1.21583 * 119.99464 * 5.07707 * 15 14 13 17 17 N 1.34766 * 120.00167 * 185.07369 * 15 14 13 18 18 C 1.46926 * 120.63011 * 5.50297 * 17 15 14 19 19 C 1.53626 * 108.54674 * 126.36774 * 18 17 15 20 20 C 1.53039 * 109.23903 * 54.85434 * 19 18 17 21 21 C 1.53035 * 109.53988 * 298.51400 * 20 19 18 22 22 C 1.46922 * 120.63414 * 185.77958 * 17 15 14 23 23 N 1.31928 * 120.84875 * 359.97438 * 13 12 11 24 24 H 0.96997 * 119.99546 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.43635 * 0.04994 * 10 9 7 26 26 H 1.08002 * 120.65712 * 179.75330 * 11 10 9 27 27 H 1.07997 * 120.25267 * 180.24987 * 12 11 10 28 28 H 0.97000 * 119.99803 * 158.02321 * 14 13 12 29 29 H 1.09009 * 109.58413 * 246.19995 * 18 17 15 30 30 H 1.09001 * 109.58613 * 6.62142 * 18 17 15 31 31 H 1.08996 * 109.63134 * 294.86482 * 19 18 17 32 32 H 1.09001 * 109.43153 * 174.72361 * 19 18 17 33 33 H 1.09007 * 109.45737 * 178.49270 * 20 19 18 34 34 H 1.08999 * 109.44897 * 58.52862 * 20 19 18 35 35 H 1.09000 * 109.49856 * 301.41216 * 21 20 19 36 36 H 1.09001 * 109.49932 * 181.32174 * 21 20 19 37 37 H 1.09004 * 109.58585 * 353.37557 * 22 17 15 38 38 H 1.08999 * 109.59071 * 113.79798 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8827 2.3965 -1.2126 6 1 1.8827 2.3965 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3010 -2.4366 -0.0005 10 6 2.0085 -3.6517 0.0043 11 6 1.3032 -4.8415 -0.0015 12 6 -0.0828 -4.7934 -0.0008 13 6 -0.7278 -3.5549 -0.0003 14 7 -2.1194 -3.5047 -0.0002 15 6 -2.8320 -4.5619 -0.4374 16 8 -2.2643 -5.5923 -0.7446 17 7 -4.1735 -4.4769 -0.5338 18 6 -4.8630 -3.2042 -0.2821 19 6 -5.7522 -2.8824 -1.4928 20 6 -6.6894 -4.0628 -1.7581 21 6 -5.8633 -5.3088 -2.0853 22 6 -4.9749 -5.6567 -0.8868 23 7 -0.0358 -2.4317 0.0000 24 1 -0.4849 0.8401 0.0004 25 1 3.0885 -3.6560 0.0089 26 1 1.8215 -5.7890 -0.0019 27 1 -0.6589 -5.7069 -0.0012 28 1 -2.5760 -2.7088 0.3145 29 1 -5.4783 -3.2928 0.6134 30 1 -4.1278 -2.4111 -0.1458 31 1 -5.1283 -2.7090 -2.3696 32 1 -6.3416 -1.9899 -1.2828 33 1 -7.3405 -3.8274 -2.6001 34 1 -7.2955 -4.2513 -0.8720 35 1 -5.2384 -5.1126 -2.9565 36 1 -6.5318 -6.1433 -2.2971 37 1 -4.3135 -6.4824 -1.1496 38 1 -5.5990 -5.9413 -0.0397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932421124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:22 Heat of formation + Delta-G solvation = 18.192083 kcal Electronic energy + Delta-G solvation = -21200.642668 eV Core-core repulsion = 18043.417424 eV Total energy + Delta-G solvation = -3157.225244 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.35601 -38.30098 -37.05075 -34.33622 -33.40347 -32.56688 -31.06646 -30.31553 -28.98068 -25.70086 -25.04455 -23.36007 -21.92127 -21.53769 -20.56777 -19.17210 -18.11645 -17.38611 -16.28677 -15.49751 -15.25576 -14.70185 -14.60759 -14.46203 -14.26458 -13.93247 -13.74009 -13.20176 -12.99190 -12.85338 -12.38666 -12.18786 -11.93862 -11.38622 -11.26255 -11.08697 -11.05538 -10.91022 -10.65659 -10.63017 -10.61831 -10.05110 -9.81691 -9.21627 -8.96001 -8.50363 -7.98373 -7.63557 -7.03742 -6.38239 -4.47065 2.70424 2.88860 2.97787 3.10175 3.14806 3.27781 3.70551 3.96805 4.21348 4.69034 4.74814 4.78635 4.83296 5.02473 5.21646 5.39996 5.43288 5.65063 5.73796 5.76555 5.79774 5.95144 5.97006 5.99165 6.20647 6.23794 6.47767 6.56603 6.81147 6.85129 7.03064 7.10944 7.24549 7.55792 7.64870 7.95407 8.09324 8.21084 8.44951 8.73704 8.93347 9.08742 10.09294 10.34320 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.004973 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.163882 B = 5629.564699 C = 6764.302088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.072 3.928 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.437 4.437 8 H 0.085 0.915 9 C 0.280 3.720 10 C -0.290 4.290 11 C -0.051 4.051 12 C -0.312 4.312 13 C 0.370 3.630 14 N -0.659 5.659 15 C 0.711 3.289 16 O -0.570 6.570 17 N -0.631 5.631 18 C 0.108 3.892 19 C -0.135 4.135 20 C -0.118 4.118 21 C -0.136 4.136 22 C 0.130 3.870 23 N -0.508 5.508 24 H 0.269 0.731 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.139 0.861 28 H 0.402 0.598 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.091 -3.121 -1.037 13.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.347 5.347 2 C -0.152 4.152 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.153 3.847 10 C -0.313 4.313 11 C -0.076 4.076 12 C -0.337 4.337 13 C 0.135 3.865 14 N -0.307 5.307 15 C 0.412 3.588 16 O -0.447 6.447 17 N -0.370 5.370 18 C -0.016 4.016 19 C -0.173 4.173 20 C -0.156 4.156 21 C -0.174 4.174 22 C 0.007 3.993 23 N -0.227 5.227 24 H 0.080 0.920 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.156 0.844 28 H 0.239 0.761 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.307 -2.928 -1.270 13.684 hybrid contribution 0.510 0.544 0.091 0.751 sum -12.797 -2.384 -1.179 13.070 Atomic orbital electron populations 1.70135 1.07207 1.27251 1.30083 1.26027 0.94862 1.00944 0.93398 0.86300 0.80932 0.81304 0.78409 1.18422 1.19970 1.19936 1.19583 0.94222 0.89200 1.43876 0.89687 1.18179 0.86361 0.92112 0.88070 1.21713 0.98720 0.93522 1.17309 1.20833 0.93756 0.96583 0.96404 1.21833 0.94574 0.98024 1.19299 1.18257 0.82024 0.91063 0.95154 1.42422 1.05502 1.17563 1.65219 1.15698 0.80913 0.83830 0.78349 1.90780 1.67946 1.29945 1.56059 1.47280 1.04288 1.11050 1.74345 1.21758 0.96269 0.85871 0.97682 1.21979 0.98202 0.98273 0.98838 1.21500 0.97567 0.94983 1.01504 1.21936 0.98547 0.98124 0.98799 1.21411 0.93477 0.88041 0.96387 1.68018 1.08178 1.24660 1.21845 0.92013 0.88302 0.88391 0.84402 0.76061 0.91411 0.89873 0.91271 0.90788 0.91891 0.91868 0.91420 0.90925 0.88777 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.97 11.46 55.55 0.64 -18.33 16 2 C 0.07 1.83 5.50 -17.34 -0.10 1.73 16 3 Si 0.91 18.59 29.56 -169.99 -5.02 13.57 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.44 -11.81 9.14 -37.74 -0.34 -12.15 16 8 H 0.09 2.16 7.85 -52.49 -0.41 1.75 16 9 C 0.28 7.84 6.55 -84.99 -0.56 7.29 16 10 C -0.29 -7.45 9.83 -38.66 -0.38 -7.83 16 11 C -0.05 -1.24 10.15 -39.39 -0.40 -1.64 16 12 C -0.31 -7.94 8.90 -38.89 -0.35 -8.28 16 13 C 0.37 9.50 7.50 -154.99 -1.16 8.34 16 14 N -0.66 -14.03 5.27 -15.79 -0.08 -14.11 16 15 C 0.71 14.06 8.19 -86.93 -0.71 13.34 16 16 O -0.57 -12.98 12.44 5.29 0.07 -12.91 16 17 N -0.63 -9.35 2.97 -178.23 -0.53 -9.88 16 18 C 0.11 1.27 6.37 -3.49 -0.02 1.25 16 19 C -0.13 -1.35 6.10 -26.39 -0.16 -1.51 16 20 C -0.12 -1.03 5.88 -26.69 -0.16 -1.19 16 21 C -0.14 -1.35 6.08 -26.62 -0.16 -1.51 16 22 C 0.13 1.59 6.44 -3.71 -0.02 1.57 16 23 N -0.51 -14.16 7.89 -10.26 -0.08 -14.24 16 24 H 0.27 6.33 8.29 -40.82 -0.34 5.99 16 25 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 26 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 27 H 0.14 3.49 5.19 -52.80 -0.27 3.22 16 28 H 0.40 7.73 6.42 -40.82 -0.26 7.47 16 29 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.08 1.06 5.75 -51.93 -0.30 0.76 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.32 7.00 -51.93 -0.36 0.95 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 309.28 15.07 4.66 4.66 Total: -1.00 -31.75 309.28 -9.85 -41.60 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -4.97 Total: 10.24 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -4.52 Total: -0.60 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.06 Total: -56.56 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.07 Total: -12.91 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.02 Total: 13.57 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.75 -9.85 -41.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932421124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.796 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds