Wall clock time and date at job start Mon Mar 30 2020 02:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86805 * 119.99949 * 2 1 4 4 H 1.48498 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47186 * 299.99850 * 3 2 1 6 6 H 1.48498 * 109.47174 * 59.99942 * 3 2 1 7 7 C 1.40029 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00311 * 179.97438 * 7 2 1 9 9 C 1.41328 * 119.99695 * 359.97438 * 7 2 1 10 10 C 1.40616 * 119.78721 * 180.25527 * 9 7 2 11 11 C 1.38315 * 119.12585 * 180.27261 * 10 9 7 12 12 C 1.38682 * 118.67329 * 359.47578 * 11 10 9 13 13 C 1.39645 * 119.49761 * 0.28124 * 12 11 10 14 14 N 1.39250 * 119.57653 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00075 * 338.02411 * 14 13 12 16 16 O 1.21583 * 119.99464 * 5.07707 * 15 14 13 17 17 N 1.34766 * 120.00167 * 185.07369 * 15 14 13 18 18 C 1.46926 * 120.63011 * 5.50297 * 17 15 14 19 19 C 1.53626 * 108.54674 * 126.36774 * 18 17 15 20 20 C 1.53039 * 109.23903 * 54.85434 * 19 18 17 21 21 C 1.53035 * 109.53988 * 298.51400 * 20 19 18 22 22 C 1.46922 * 120.63414 * 185.77958 * 17 15 14 23 23 N 1.31928 * 120.84875 * 359.97438 * 13 12 11 24 24 H 0.96997 * 119.99546 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.43635 * 0.04994 * 10 9 7 26 26 H 1.08002 * 120.65712 * 179.75330 * 11 10 9 27 27 H 1.07997 * 120.25267 * 180.24987 * 12 11 10 28 28 H 0.97000 * 119.99803 * 158.02321 * 14 13 12 29 29 H 1.09009 * 109.58413 * 246.19995 * 18 17 15 30 30 H 1.09001 * 109.58613 * 6.62142 * 18 17 15 31 31 H 1.08996 * 109.63134 * 294.86482 * 19 18 17 32 32 H 1.09001 * 109.43153 * 174.72361 * 19 18 17 33 33 H 1.09007 * 109.45737 * 178.49270 * 20 19 18 34 34 H 1.08999 * 109.44897 * 58.52862 * 20 19 18 35 35 H 1.09000 * 109.49856 * 301.41216 * 21 20 19 36 36 H 1.09001 * 109.49932 * 181.32174 * 21 20 19 37 37 H 1.09004 * 109.58585 * 353.37557 * 22 17 15 38 38 H 1.08999 * 109.59071 * 113.79798 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8827 2.3965 -1.2126 6 1 1.8827 2.3965 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3010 -2.4366 -0.0005 10 6 2.0085 -3.6517 0.0043 11 6 1.3032 -4.8415 -0.0015 12 6 -0.0828 -4.7934 -0.0008 13 6 -0.7278 -3.5549 -0.0003 14 7 -2.1194 -3.5047 -0.0002 15 6 -2.8320 -4.5619 -0.4374 16 8 -2.2643 -5.5923 -0.7446 17 7 -4.1735 -4.4769 -0.5338 18 6 -4.8630 -3.2042 -0.2821 19 6 -5.7522 -2.8824 -1.4928 20 6 -6.6894 -4.0628 -1.7581 21 6 -5.8633 -5.3088 -2.0853 22 6 -4.9749 -5.6567 -0.8868 23 7 -0.0358 -2.4317 0.0000 24 1 -0.4849 0.8401 0.0004 25 1 3.0885 -3.6560 0.0089 26 1 1.8215 -5.7890 -0.0019 27 1 -0.6589 -5.7069 -0.0012 28 1 -2.5760 -2.7088 0.3145 29 1 -5.4783 -3.2928 0.6134 30 1 -4.1278 -2.4111 -0.1458 31 1 -5.1283 -2.7090 -2.3696 32 1 -6.3416 -1.9899 -1.2828 33 1 -7.3405 -3.8274 -2.6001 34 1 -7.2955 -4.2513 -0.8720 35 1 -5.2384 -5.1126 -2.9565 36 1 -6.5318 -6.1433 -2.2971 37 1 -4.3135 -6.4824 -1.1496 38 1 -5.5990 -5.9413 -0.0397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932421124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:22 Heat of formation + Delta-G solvation = -0.478651 kcal Electronic energy + Delta-G solvation = -21201.452292 eV Core-core repulsion = 18043.417424 eV Total energy + Delta-G solvation = -3158.034868 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.85423 -39.97544 -38.42959 -36.09663 -35.20286 -33.78066 -32.37200 -31.97550 -30.82081 -27.49802 -26.35177 -24.38757 -23.51116 -23.39810 -21.88055 -20.57190 -19.50452 -19.24971 -18.01748 -17.02982 -16.72836 -16.35350 -16.22709 -15.76274 -15.42071 -15.36437 -14.88047 -14.62722 -14.38560 -14.28210 -13.90845 -13.82043 -13.32887 -12.91362 -12.87333 -12.64657 -12.59749 -12.22643 -11.88030 -11.80652 -11.62746 -11.54588 -11.47657 -11.06247 -10.70183 -9.98781 -9.74061 -9.61510 -8.93883 -8.29944 -6.50503 0.81581 1.11922 1.43128 1.48908 1.54789 1.58219 2.08268 2.24929 2.80704 2.88577 3.80302 3.89063 3.94076 3.99659 4.13120 4.32495 4.34796 4.45134 4.57445 4.65117 4.78998 4.84794 4.90095 4.92254 4.94644 5.02845 5.06458 5.14669 5.23550 5.24643 5.45766 5.51599 5.65563 5.69378 5.81183 5.99937 6.18035 6.28884 6.71726 6.83892 6.98774 7.46072 8.10367 8.45969 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.004973 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.163882 B = 5629.564699 C = 6764.302088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.026 3.974 3 Si 0.989 3.011 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.265 1.265 7 C -0.466 4.466 8 H 0.092 0.908 9 C 0.245 3.755 10 C -0.307 4.307 11 C -0.049 4.049 12 C -0.329 4.329 13 C 0.360 3.640 14 N -0.657 5.657 15 C 0.704 3.296 16 O -0.606 6.606 17 N -0.621 5.621 18 C 0.101 3.899 19 C -0.131 4.131 20 C -0.113 4.113 21 C -0.130 4.130 22 C 0.123 3.877 23 N -0.533 5.533 24 H 0.279 0.721 25 H 0.114 0.886 26 H 0.130 0.870 27 H 0.139 0.861 28 H 0.410 0.590 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.045 0.955 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.640 -2.213 -0.901 14.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.498 4.498 8 H 0.110 0.890 9 C 0.118 3.882 10 C -0.330 4.330 11 C -0.074 4.074 12 C -0.354 4.354 13 C 0.124 3.876 14 N -0.306 5.306 15 C 0.405 3.595 16 O -0.486 6.486 17 N -0.358 5.358 18 C -0.021 4.021 19 C -0.170 4.170 20 C -0.150 4.150 21 C -0.168 4.168 22 C 0.001 3.999 23 N -0.253 5.253 24 H 0.090 0.910 25 H 0.132 0.868 26 H 0.148 0.852 27 H 0.156 0.844 28 H 0.248 0.752 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.929 -2.033 -1.136 15.109 hybrid contribution 0.881 0.204 0.042 0.905 sum -14.048 -1.830 -1.094 14.208 Atomic orbital electron populations 1.70208 1.08840 1.28962 1.29668 1.26968 0.95788 1.04417 0.92373 0.85057 0.79387 0.75873 0.78736 1.17877 1.19249 1.18951 1.19972 0.94827 0.90081 1.44878 0.89002 1.18717 0.87084 0.93529 0.88850 1.21899 0.99567 0.93398 1.18152 1.21189 0.93582 0.97661 0.94918 1.22028 0.95270 0.98046 1.20049 1.18595 0.83734 0.90875 0.94349 1.42350 1.04172 1.18502 1.65583 1.15916 0.82473 0.82846 0.78224 1.90731 1.69270 1.31017 1.57554 1.47416 1.02565 1.13110 1.72703 1.22045 0.96273 0.83890 0.99931 1.21980 0.98024 1.00118 0.96843 1.21506 0.97183 0.93281 1.03067 1.21917 0.98322 0.99996 0.96612 1.21690 0.93252 0.86383 0.98572 1.68052 1.08490 1.25549 1.23212 0.91042 0.86776 0.85171 0.84419 0.75168 0.88503 0.91323 0.93576 0.88381 0.90312 0.89853 0.93645 0.88272 0.91098 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.92 11.46 21.84 0.25 -39.67 16 2 C 0.03 1.33 5.50 85.29 0.47 1.80 16 3 Si 0.99 37.80 29.56 68.60 2.03 39.83 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 7 C -0.47 -25.62 9.14 23.46 0.21 -25.40 16 8 H 0.09 4.72 7.85 -2.91 -0.02 4.69 16 9 C 0.24 14.11 6.55 40.20 0.26 14.38 16 10 C -0.31 -16.10 9.83 22.87 0.22 -15.88 16 11 C -0.05 -2.42 10.15 22.39 0.23 -2.19 16 12 C -0.33 -17.16 8.90 22.72 0.20 -16.96 16 13 C 0.36 19.12 7.50 133.24 1.00 20.12 16 14 N -0.66 -28.83 5.27 -322.13 -1.70 -30.52 16 15 C 0.70 28.47 8.19 179.06 1.47 29.94 16 16 O -0.61 -28.45 12.44 -3.98 -0.05 -28.50 16 17 N -0.62 -18.07 2.97 -836.08 -2.48 -20.55 16 18 C 0.10 2.22 6.37 86.51 0.55 2.78 16 19 C -0.13 -2.35 6.10 30.82 0.19 -2.17 16 20 C -0.11 -1.59 5.88 30.62 0.18 -1.41 16 21 C -0.13 -2.32 6.08 30.67 0.19 -2.13 16 22 C 0.12 2.85 6.44 86.36 0.56 3.41 16 23 N -0.53 -30.67 7.89 -186.37 -1.47 -32.14 16 24 H 0.28 13.14 8.29 -92.71 -0.77 12.37 16 25 H 0.11 5.43 8.06 -2.91 -0.02 5.41 16 26 H 0.13 5.41 8.06 -2.91 -0.02 5.38 16 27 H 0.14 7.18 5.19 -7.90 -0.04 7.14 16 28 H 0.41 16.23 6.42 -92.71 -0.60 15.64 16 29 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.07 1.72 5.75 -2.39 -0.01 1.71 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 1.99 7.00 -2.38 -0.02 1.98 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -71.01 309.28 2.77 -68.25 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: 0.46 Total: 37.04 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 5.73 Total: 6.28 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -5.40 Total: -122.89 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.05 Total: -28.50 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Total: -71.01 2.77 -68.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932421124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.768 kcal (2) G-P(sol) polarization free energy of solvation -71.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds