Wall clock time and date at job start Mon Mar 30 2020 01:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42903 * 114.00233 * 2 1 4 4 C 1.52999 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.50050 * 176.40259 * 4 3 2 6 6 C 1.53102 * 109.50673 * 56.27400 * 4 3 2 7 7 O 1.43020 * 109.25841 * 183.21268 * 6 4 3 8 8 C 1.43016 * 113.73479 * 58.67089 * 7 6 4 9 9 C 1.53095 * 109.26074 * 301.32881 * 8 7 6 10 10 N 1.47012 * 109.50880 * 296.49178 * 4 3 2 11 11 C 1.46898 * 111.00029 * 302.32629 * 10 4 3 12 12 C 1.52998 * 109.47351 * 170.73351 * 11 10 4 13 13 C 1.52998 * 109.47347 * 180.02562 * 12 11 10 14 14 S 1.80990 * 109.47321 * 179.97438 * 13 12 11 15 15 C 1.76201 * 100.00239 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99834 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00251 * 180.02562 * 15 14 13 18 18 N 1.31635 * 119.99932 * 0.27519 * 17 15 14 19 19 Si 1.86805 * 120.00052 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47196 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46744 * 120.00033 * 19 17 15 22 22 H 1.48495 * 109.46998 * 239.99902 * 19 17 15 23 23 H 1.09000 * 109.47835 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47789 * 300.00790 * 1 2 3 25 25 H 1.09004 * 109.46954 * 60.00648 * 1 2 3 26 26 H 1.09000 * 109.47104 * 59.99672 * 3 2 1 27 27 H 1.08998 * 109.47003 * 299.99618 * 3 2 1 28 28 H 1.08993 * 109.50899 * 303.14778 * 6 4 3 29 29 H 1.09006 * 109.50342 * 63.28081 * 6 4 3 30 30 H 1.08997 * 109.50758 * 61.26470 * 8 7 6 31 31 H 1.08997 * 109.50272 * 181.39857 * 8 7 6 32 32 H 1.09003 * 109.50768 * 296.91942 * 9 8 7 33 33 H 1.09001 * 109.50854 * 176.78666 * 9 8 7 34 34 H 1.09007 * 109.47013 * 50.73433 * 11 10 4 35 35 H 1.08999 * 109.47221 * 290.73495 * 11 10 4 36 36 H 1.08995 * 109.47296 * 60.00268 * 12 11 10 37 37 H 1.08999 * 109.47075 * 300.00233 * 12 11 10 38 38 H 1.09007 * 109.47151 * 60.00000 * 13 12 11 39 39 H 1.08999 * 109.47088 * 300.00059 * 13 12 11 40 40 H 0.97000 * 119.99527 * 359.72868 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9792 2.1781 -0.0638 6 6 3.9822 0.3452 -1.1993 7 8 5.4012 0.1726 -1.1521 8 6 5.8644 -0.4627 0.0425 9 6 5.4367 0.3684 1.2550 10 7 3.9755 0.5298 1.2412 11 6 3.5170 1.2751 2.4211 12 6 3.7893 0.4521 3.6818 13 6 3.3112 1.2281 4.9106 14 16 3.6327 0.2542 6.4019 15 6 3.0036 1.3535 7.6269 16 1 2.5829 2.3042 7.3343 17 6 3.0488 0.9977 8.9677 18 7 3.5665 -0.1587 9.3247 19 14 2.3812 2.1629 10.2663 20 1 1.8623 3.3900 9.6105 21 1 1.2819 1.4972 11.0104 22 1 3.4682 2.5273 11.2101 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.4957 -0.6295 -1.1631 29 1 3.7081 0.8555 -2.1227 30 1 5.4326 -1.4609 0.1149 31 1 6.9516 -0.5367 0.0173 32 1 5.9115 1.3486 1.2102 33 1 5.7380 -0.1412 2.1702 34 1 2.4473 1.4671 2.3365 35 1 4.0524 2.2225 2.4830 36 1 4.8589 0.2602 3.7664 37 1 3.2539 -0.4953 3.6198 38 1 2.2415 1.4197 4.8258 39 1 3.8463 2.1757 4.9727 40 1 3.9129 -0.7638 8.6503 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933334936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:42 Heat of formation + Delta-G solvation = -98.031822 kcal Electronic energy + Delta-G solvation = -19626.448644 eV Core-core repulsion = 16567.334753 eV Total energy + Delta-G solvation = -3059.113891 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.08441 -37.76481 -36.37154 -33.12648 -32.51726 -31.89771 -28.37638 -27.23019 -25.87819 -25.19218 -24.15487 -22.76046 -21.02744 -20.10910 -18.13209 -16.91923 -16.85087 -16.44220 -15.58956 -15.45086 -15.26614 -14.86537 -14.75244 -14.16617 -13.92707 -13.89784 -13.73537 -12.90335 -12.73267 -12.48213 -12.28592 -12.03895 -11.74975 -11.64042 -11.35829 -11.17742 -10.96442 -10.88392 -10.61079 -10.31474 -10.21436 -9.96046 -9.59968 -9.33694 -9.00343 -8.41199 -8.30250 -6.69378 -6.62754 -4.00385 3.23815 3.36963 3.39387 3.51661 3.56622 3.70114 3.74109 4.25001 4.54482 4.66712 4.79496 5.00465 5.04308 5.06095 5.11630 5.17959 5.21202 5.22094 5.24874 5.32381 5.34620 5.46395 5.52829 5.53585 5.61972 5.67938 5.70337 5.80432 5.88269 6.00675 6.22624 6.48280 6.63665 6.86277 6.92134 6.96386 7.07186 7.95604 8.50443 9.27428 10.81782 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.025289 B = 0.003598 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.953061 B = 7779.318917 C = 8460.997285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.066 3.934 4 C 0.051 3.949 5 H 0.060 0.940 6 C 0.073 3.927 7 O -0.389 6.389 8 C 0.064 3.936 9 C 0.014 3.986 10 N -0.521 5.521 11 C 0.057 3.943 12 C -0.093 4.093 13 C -0.089 4.089 14 S -0.188 6.188 15 C -0.589 4.589 16 H 0.065 0.935 17 C 0.033 3.967 18 N -0.888 5.888 19 Si 1.089 2.911 20 H -0.288 1.288 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.086 0.914 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.041 0.959 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.032 0.968 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.489 2.604 -21.575 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C -0.011 4.011 4 C -0.058 4.058 5 H 0.078 0.922 6 C -0.004 4.004 7 O -0.308 6.308 8 C -0.013 4.013 9 C -0.114 4.114 10 N -0.247 5.247 11 C -0.072 4.072 12 C -0.132 4.132 13 C -0.238 4.238 14 S 0.040 5.960 15 C -0.737 4.737 16 H 0.084 0.916 17 C -0.177 4.177 18 N -0.522 5.522 19 Si 0.916 3.084 20 H -0.214 1.214 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.104 0.896 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.059 0.941 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.214 1.164 -19.961 20.031 hybrid contribution -0.489 2.262 -1.417 2.713 sum -1.704 3.426 -21.378 21.718 Atomic orbital electron populations 1.22747 0.81389 1.02853 0.99694 1.87991 1.19092 1.26601 1.95241 1.22579 0.92346 0.85750 1.00442 1.22369 0.94025 0.97247 0.92186 0.92244 1.22594 0.81205 1.00319 0.96275 1.87953 1.22074 1.80792 1.39934 1.22683 0.99487 0.95767 0.83348 1.22875 0.88086 1.00063 1.00353 1.62180 1.11212 1.50154 1.01129 1.22264 1.00630 0.94751 0.89533 1.21288 1.01736 0.99166 0.91032 1.23033 1.02479 1.01198 0.97129 1.84160 1.82245 1.30278 0.99339 1.23595 1.49794 1.06109 0.94160 0.91641 1.26078 0.95050 0.98997 0.97584 1.70741 1.35214 1.08458 1.37815 0.83250 0.76507 0.74146 0.74514 1.21432 1.20872 1.20877 0.89555 0.94043 0.94478 0.92457 0.92868 0.91042 0.88938 0.92020 0.88516 0.94126 0.88752 0.90429 0.94983 0.91676 0.90595 0.91982 0.92160 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.37 -4.33 9.75 -35.23 -0.34 -4.67 16 3 C 0.07 0.67 5.27 37.16 0.20 0.86 16 4 C 0.05 0.56 2.38 -67.60 -0.16 0.40 16 5 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 6 C 0.07 0.78 6.16 37.21 0.23 1.01 16 7 O -0.39 -4.68 10.83 -35.23 -0.38 -5.06 16 8 C 0.06 0.69 7.01 37.21 0.26 0.95 16 9 C 0.01 0.17 5.43 -3.71 -0.02 0.15 16 10 N -0.52 -6.70 4.47 -226.33 -1.01 -7.72 16 11 C 0.06 0.79 4.73 -3.83 -0.02 0.77 16 12 C -0.09 -1.56 5.14 -26.73 -0.14 -1.70 16 13 C -0.09 -1.82 5.67 37.16 0.21 -1.61 16 14 S -0.19 -4.94 20.46 -107.50 -2.20 -7.14 16 15 C -0.59 -17.25 9.50 30.94 0.29 -16.95 16 16 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 17 C 0.03 0.96 5.49 -17.43 -0.10 0.87 16 18 N -0.89 -27.57 13.67 55.49 0.76 -26.81 16 19 Si 1.09 25.32 29.92 -169.99 -5.09 20.24 16 20 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.59 5.99 -51.93 -0.31 0.28 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.83 7.49 -51.93 -0.39 0.44 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 1.15 6.36 -51.93 -0.33 0.82 16 34 H 0.08 1.05 5.72 -51.92 -0.30 0.76 16 35 H 0.03 0.44 8.13 -51.93 -0.42 0.01 16 36 H 0.06 1.08 6.49 -51.93 -0.34 0.75 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.06 1.27 8.14 -51.91 -0.42 0.84 16 39 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 40 H 0.28 8.72 7.12 -40.82 -0.29 8.43 16 LS Contribution 331.01 15.07 4.99 4.99 Total: -1.00 -32.94 331.01 -8.06 -41.00 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.66 Total: -0.95 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 1.87 Total: -13.88 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: -0.25 Total: -34.52 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.72 Total: -9.73 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.09 Total: 20.24 kcal Atomic # 16 Polarization: -4.94 SS G_CDS: -2.20 Total: -7.14 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.94 -8.06 -41.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933334936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.033 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds