Wall clock time and date at job start Mon Mar 30 2020 01:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42903 * 114.00233 * 2 1 4 4 C 1.52999 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.50050 * 176.40259 * 4 3 2 6 6 C 1.53102 * 109.50673 * 56.27400 * 4 3 2 7 7 O 1.43020 * 109.25841 * 183.21268 * 6 4 3 8 8 C 1.43016 * 113.73479 * 58.67089 * 7 6 4 9 9 C 1.53095 * 109.26074 * 301.32881 * 8 7 6 10 10 N 1.47012 * 109.50880 * 296.49178 * 4 3 2 11 11 C 1.46898 * 111.00029 * 302.32629 * 10 4 3 12 12 C 1.52998 * 109.47351 * 170.73351 * 11 10 4 13 13 C 1.52998 * 109.47347 * 180.02562 * 12 11 10 14 14 S 1.80990 * 109.47321 * 179.97438 * 13 12 11 15 15 C 1.76201 * 100.00239 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99834 * 0.02562 * 15 14 13 17 17 C 1.38801 * 120.00251 * 180.02562 * 15 14 13 18 18 N 1.31635 * 119.99932 * 0.27519 * 17 15 14 19 19 Si 1.86805 * 120.00052 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47196 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46744 * 120.00033 * 19 17 15 22 22 H 1.48495 * 109.46998 * 239.99902 * 19 17 15 23 23 H 1.09000 * 109.47835 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47789 * 300.00790 * 1 2 3 25 25 H 1.09004 * 109.46954 * 60.00648 * 1 2 3 26 26 H 1.09000 * 109.47104 * 59.99672 * 3 2 1 27 27 H 1.08998 * 109.47003 * 299.99618 * 3 2 1 28 28 H 1.08993 * 109.50899 * 303.14778 * 6 4 3 29 29 H 1.09006 * 109.50342 * 63.28081 * 6 4 3 30 30 H 1.08997 * 109.50758 * 61.26470 * 8 7 6 31 31 H 1.08997 * 109.50272 * 181.39857 * 8 7 6 32 32 H 1.09003 * 109.50768 * 296.91942 * 9 8 7 33 33 H 1.09001 * 109.50854 * 176.78666 * 9 8 7 34 34 H 1.09007 * 109.47013 * 50.73433 * 11 10 4 35 35 H 1.08999 * 109.47221 * 290.73495 * 11 10 4 36 36 H 1.08995 * 109.47296 * 60.00268 * 12 11 10 37 37 H 1.08999 * 109.47075 * 300.00233 * 12 11 10 38 38 H 1.09007 * 109.47151 * 60.00000 * 13 12 11 39 39 H 1.08999 * 109.47088 * 300.00059 * 13 12 11 40 40 H 0.97000 * 119.99527 * 359.72868 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9792 2.1781 -0.0638 6 6 3.9822 0.3452 -1.1993 7 8 5.4012 0.1726 -1.1521 8 6 5.8644 -0.4627 0.0425 9 6 5.4367 0.3684 1.2550 10 7 3.9755 0.5298 1.2412 11 6 3.5170 1.2751 2.4211 12 6 3.7893 0.4521 3.6818 13 6 3.3112 1.2281 4.9106 14 16 3.6327 0.2542 6.4019 15 6 3.0036 1.3535 7.6269 16 1 2.5829 2.3042 7.3343 17 6 3.0488 0.9977 8.9677 18 7 3.5665 -0.1587 9.3247 19 14 2.3812 2.1629 10.2663 20 1 1.8623 3.3900 9.6105 21 1 1.2819 1.4972 11.0104 22 1 3.4682 2.5273 11.2101 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.4957 -0.6295 -1.1631 29 1 3.7081 0.8555 -2.1227 30 1 5.4326 -1.4609 0.1149 31 1 6.9516 -0.5367 0.0173 32 1 5.9115 1.3486 1.2102 33 1 5.7380 -0.1412 2.1702 34 1 2.4473 1.4671 2.3365 35 1 4.0524 2.2225 2.4830 36 1 4.8589 0.2602 3.7664 37 1 3.2539 -0.4953 3.6198 38 1 2.2415 1.4197 4.8258 39 1 3.8463 2.1757 4.9727 40 1 3.9129 -0.7638 8.6503 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933334936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:42 Heat of formation + Delta-G solvation = -121.280173 kcal Electronic energy + Delta-G solvation = -19627.456768 eV Core-core repulsion = 16567.334753 eV Total energy + Delta-G solvation = -3060.122015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.98677 -38.56573 -37.41692 -34.80538 -34.30199 -32.84873 -29.42697 -28.08764 -27.26431 -26.64176 -25.55010 -23.63139 -22.36192 -21.02240 -20.27936 -17.85116 -17.72189 -17.31628 -16.64582 -16.49798 -16.39706 -16.21277 -15.79187 -15.75267 -15.31112 -14.97016 -14.88970 -14.63085 -14.40877 -13.72552 -13.28862 -13.06622 -12.86577 -12.78683 -12.74878 -12.46492 -12.32722 -12.08434 -11.97062 -11.61031 -11.49492 -11.23813 -11.12015 -10.75530 -10.42322 -10.41208 -9.39023 -8.95419 -8.87980 -6.29622 1.40083 1.55450 1.58446 1.76478 2.31138 2.60416 2.88330 2.90641 2.99218 3.11613 3.69534 3.77653 3.87098 3.91364 4.14603 4.16700 4.24152 4.25517 4.32402 4.37013 4.43246 4.48533 4.55287 4.57830 4.61507 4.68165 4.74545 4.81095 4.87803 4.91295 4.99821 5.07186 5.18272 5.61780 5.90896 5.93459 6.12113 6.15009 6.29316 7.03303 8.49307 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.025289 B = 0.003598 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.953061 B = 7779.318917 C = 8460.997285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.065 3.935 4 C 0.050 3.950 5 H 0.067 0.933 6 C 0.075 3.925 7 O -0.400 6.400 8 C 0.066 3.934 9 C 0.014 3.986 10 N -0.534 5.534 11 C 0.069 3.931 12 C -0.080 4.080 13 C -0.066 4.066 14 S -0.242 6.242 15 C -0.606 4.606 16 H 0.064 0.936 17 C -0.017 4.017 18 N -0.912 5.912 19 Si 1.139 2.861 20 H -0.269 1.269 21 H -0.272 1.272 22 H -0.272 1.272 23 H 0.089 0.911 24 H 0.038 0.962 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.115 0.885 30 H 0.056 0.944 31 H 0.116 0.884 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.038 0.962 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.049 4.077 -22.762 23.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.011 4.011 4 C -0.058 4.058 5 H 0.084 0.916 6 C -0.002 4.002 7 O -0.319 6.319 8 C -0.011 4.011 9 C -0.114 4.114 10 N -0.259 5.259 11 C -0.060 4.060 12 C -0.119 4.119 13 C -0.215 4.215 14 S -0.014 6.014 15 C -0.753 4.753 16 H 0.082 0.918 17 C -0.221 4.221 18 N -0.547 5.547 19 Si 0.957 3.043 20 H -0.194 1.194 21 H -0.197 1.197 22 H -0.197 1.197 23 H 0.108 0.892 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.133 0.867 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.771 2.628 -21.181 21.417 hybrid contribution -0.313 1.778 -1.170 2.151 sum -2.083 4.406 -22.350 22.876 Atomic orbital electron populations 1.22862 0.80206 1.03429 1.00488 1.87953 1.20508 1.27597 1.95438 1.22645 0.91578 0.85424 1.01494 1.22459 0.94834 0.97384 0.91169 0.91566 1.22671 0.80483 0.99933 0.97132 1.87940 1.22829 1.80846 1.40286 1.22740 1.00629 0.95117 0.82612 1.22892 0.87659 1.00254 1.00610 1.62136 1.11804 1.50504 1.01498 1.22050 1.01099 0.94275 0.88588 1.21142 1.01320 0.98542 0.90863 1.23003 1.02712 1.00612 0.95202 1.84231 1.82514 1.32234 1.02400 1.23950 1.49688 1.06397 0.95301 0.91751 1.27780 0.94326 0.99629 1.00322 1.70860 1.36944 1.09468 1.37454 0.82670 0.76527 0.72795 0.72280 1.19364 1.19708 1.19711 0.89212 0.94379 0.92485 0.92862 0.90274 0.92264 0.86660 0.92527 0.86588 0.93973 0.89460 0.89975 0.94346 0.91693 0.91820 0.91801 0.91795 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.40 -8.63 9.75 -148.98 -1.45 -10.09 16 3 C 0.07 1.18 5.27 71.98 0.38 1.56 16 4 C 0.05 1.00 2.38 44.93 0.11 1.11 16 5 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 6 C 0.07 1.45 6.16 72.02 0.44 1.89 16 7 O -0.40 -8.92 10.83 -148.98 -1.61 -10.53 16 8 C 0.07 1.34 7.01 72.01 0.50 1.84 16 9 C 0.01 0.31 5.43 86.31 0.47 0.78 16 10 N -0.53 -13.02 4.47 -869.99 -3.89 -16.90 16 11 C 0.07 1.81 4.73 86.30 0.41 2.22 16 12 C -0.08 -2.62 5.14 30.59 0.16 -2.47 16 13 C -0.07 -2.67 5.67 71.98 0.41 -2.26 16 14 S -0.24 -12.94 20.46 -56.49 -1.16 -14.10 16 15 C -0.61 -35.67 9.50 67.95 0.65 -35.03 16 16 H 0.06 3.69 7.80 -2.91 -0.02 3.67 16 17 C -0.02 -1.00 5.49 84.86 0.47 -0.53 16 18 N -0.91 -57.35 13.67 21.65 0.30 -57.05 16 19 Si 1.14 50.06 29.92 68.60 2.05 52.12 16 20 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 23 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.99 5.99 -2.39 -0.01 0.98 16 27 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.30 7.49 -2.39 -0.02 1.28 16 29 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 2.07 6.36 -2.39 -0.02 2.05 16 34 H 0.08 2.10 5.72 -2.38 -0.01 2.09 16 35 H 0.04 0.97 8.13 -2.39 -0.02 0.95 16 36 H 0.06 2.14 6.49 -2.39 -0.02 2.12 16 37 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.06 2.55 8.14 -2.40 -0.02 2.53 16 40 H 0.26 17.01 7.12 -92.71 -0.66 16.35 16 Total: -1.00 -70.68 331.01 0.58 -70.10 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 1.11 Total: 15.67 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 5.24 Total: -29.21 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: -3.59 Total: -73.96 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -3.07 Total: -20.62 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 2.05 Total: 52.12 kcal Atomic # 16 Polarization: -12.94 SS G_CDS: -1.16 Total: -14.10 kcal Total: -70.68 0.58 -70.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933334936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.184 kcal (2) G-P(sol) polarization free energy of solvation -70.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds