Wall clock time and date at job start Mon Mar 30 2020 01:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.50452 * 185.00188 * 4 3 2 6 6 C 1.53099 * 109.50483 * 305.08529 * 4 3 2 7 7 O 1.43025 * 109.25696 * 176.78552 * 6 4 3 8 8 C 1.43018 * 113.73442 * 301.33190 * 7 6 4 9 9 C 1.53098 * 109.26118 * 58.67454 * 8 7 6 10 10 N 1.47011 * 109.50954 * 64.91705 * 4 3 2 11 11 C 1.46898 * 111.00137 * 57.67031 * 10 4 3 12 12 C 1.53002 * 109.46863 * 170.00464 * 11 10 4 13 13 C 1.53003 * 109.46802 * 180.02562 * 12 11 10 14 14 S 1.81002 * 109.47019 * 179.97438 * 13 12 11 15 15 C 1.76201 * 99.99814 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00356 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99639 * 179.97438 * 15 14 13 18 18 N 1.31630 * 120.00138 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99700 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47251 * 60.00394 * 19 17 15 21 21 H 1.48505 * 109.46919 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47237 * 299.99960 * 19 17 15 23 23 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47054 * 299.99711 * 1 2 3 25 25 H 1.09000 * 109.47187 * 59.99767 * 1 2 3 26 26 H 1.08997 * 109.47442 * 300.00036 * 3 2 1 27 27 H 1.08997 * 109.47171 * 60.00232 * 3 2 1 28 28 H 1.09000 * 109.51091 * 296.71963 * 6 4 3 29 29 H 1.08996 * 109.50795 * 56.80806 * 6 4 3 30 30 H 1.09004 * 109.50089 * 178.60449 * 8 7 6 31 31 H 1.08994 * 109.50621 * 298.73112 * 8 7 6 32 32 H 1.09003 * 109.50947 * 63.07998 * 9 8 7 33 33 H 1.08992 * 109.50665 * 183.17121 * 9 8 7 34 34 H 1.09004 * 109.46942 * 290.00450 * 11 10 4 35 35 H 1.08999 * 109.47036 * 50.00150 * 11 10 4 36 36 H 1.08995 * 109.46792 * 299.99963 * 12 11 10 37 37 H 1.08999 * 109.47551 * 60.00001 * 12 11 10 38 38 H 1.09004 * 109.46744 * 299.99828 * 13 12 11 39 39 H 1.08999 * 109.47295 * 59.99565 * 13 12 11 40 40 H 0.97002 * 120.00110 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9791 2.1762 0.0889 6 6 3.9800 0.3172 1.1799 7 8 5.3991 0.1458 1.1313 8 6 5.8646 -0.4611 -0.0772 9 6 5.4392 0.3986 -1.2704 10 7 3.9780 0.5605 -1.2560 11 6 3.5217 1.3345 -2.4182 12 6 4.2015 0.8047 -3.6824 13 6 3.7267 1.6113 -4.8928 14 16 4.5315 0.9851 -6.3883 15 6 3.8231 2.0612 -7.5903 16 1 3.1171 2.8200 -7.2866 17 6 4.1724 1.9337 -8.9275 18 7 5.0325 1.0086 -9.2978 19 14 3.4219 3.0750 -10.2018 20 1 3.7691 4.4808 -9.8729 21 1 3.9541 2.7346 -11.5457 22 1 1.9454 2.9163 -10.2000 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6886 1.8464 -0.8899 27 1 1.6886 1.8464 0.8900 28 1 3.7042 0.8054 2.1146 29 1 3.4930 -0.6561 1.1202 30 1 6.9518 -0.5357 -0.0516 31 1 5.4330 -1.4573 -0.1739 32 1 5.9139 1.3774 -1.2016 33 1 5.7428 -0.0889 -2.1968 34 1 2.4407 1.2361 -2.5185 35 1 3.7797 2.3844 -2.2795 36 1 5.2824 0.9030 -3.5820 37 1 3.9435 -0.2452 -3.8210 38 1 2.6458 1.5133 -4.9932 39 1 3.9851 2.6611 -4.7539 40 1 5.2763 0.9192 -10.2324 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933334937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:45 Heat of formation + Delta-G solvation = -92.339641 kcal Electronic energy + Delta-G solvation = -19573.765003 eV Core-core repulsion = 16514.897944 eV Total energy + Delta-G solvation = -3058.867059 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.04665 -37.74057 -36.37856 -33.06740 -32.42779 -31.73270 -28.33039 -27.17985 -25.85078 -25.66039 -24.29133 -22.79512 -20.97355 -19.95469 -17.50553 -16.81720 -16.72354 -16.39834 -15.54927 -15.38531 -15.32307 -14.82419 -14.80859 -14.45033 -14.07297 -13.85200 -13.61237 -12.96232 -12.65463 -12.28389 -12.07267 -11.89252 -11.63483 -11.63248 -11.32156 -11.07089 -10.99479 -10.82741 -10.61601 -10.57522 -10.27824 -9.93450 -9.61379 -9.48499 -9.05306 -8.33644 -8.30769 -6.52915 -6.22758 -3.93141 3.20755 3.22835 3.27449 3.46731 3.60737 3.74720 3.80294 4.22436 4.60463 4.72455 4.87891 5.05600 5.06165 5.12757 5.14350 5.17505 5.19340 5.25635 5.34091 5.36982 5.40422 5.50787 5.52853 5.59985 5.67714 5.74868 5.77709 5.87590 5.96038 6.11703 6.30139 6.56761 6.70976 6.90678 6.96223 7.01590 7.11336 7.59944 8.36168 9.23324 10.85402 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.025442 B = 0.003550 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.273208 B = 7884.920003 C = 8655.799023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.372 6.372 3 C 0.068 3.932 4 C 0.051 3.949 5 H 0.060 0.940 6 C 0.073 3.927 7 O -0.389 6.389 8 C 0.064 3.936 9 C 0.011 3.989 10 N -0.522 5.522 11 C 0.059 3.941 12 C -0.100 4.100 13 C -0.112 4.112 14 S -0.131 6.131 15 C -0.518 4.518 16 H 0.071 0.929 17 C 0.072 3.928 18 N -0.870 5.870 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 H 0.085 0.915 24 H 0.036 0.964 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.031 0.969 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.670 -0.488 20.704 21.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.290 6.290 3 C -0.009 4.009 4 C -0.058 4.058 5 H 0.078 0.922 6 C -0.004 4.004 7 O -0.308 6.308 8 C -0.013 4.013 9 C -0.117 4.117 10 N -0.248 5.248 11 C -0.069 4.069 12 C -0.138 4.138 13 C -0.261 4.261 14 S 0.097 5.903 15 C -0.666 4.666 16 H 0.089 0.911 17 C -0.137 4.137 18 N -0.505 5.505 19 Si 0.744 3.256 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.199 1.199 23 H 0.104 0.896 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.795 -1.997 20.530 20.973 hybrid contribution -1.459 2.813 -1.000 3.323 sum -5.254 0.815 19.530 20.241 Atomic orbital electron populations 1.22743 0.81469 1.02765 0.99686 1.87987 1.19035 1.26757 1.95251 1.22532 0.92388 0.85590 1.00431 1.22393 0.93970 0.97419 0.92050 0.92216 1.22579 0.81252 1.00106 0.96440 1.87952 1.22004 1.82068 1.38774 1.22707 0.99491 0.95954 0.83185 1.22929 0.88170 1.00022 1.00555 1.62243 1.11334 1.50009 1.01184 1.22251 1.00545 0.94553 0.89577 1.21416 1.00121 1.00644 0.91629 1.23223 1.02676 1.01367 0.98857 1.84613 1.59736 1.48741 0.97204 1.22648 1.30495 1.20034 0.93394 0.91060 1.25006 0.95012 0.95908 0.97789 1.70011 1.31236 1.31785 1.17495 0.86231 0.79363 0.80424 0.79557 1.19959 1.20787 1.19937 0.89616 0.94490 0.94082 0.92546 0.92943 0.89019 0.91085 0.88506 0.92091 0.94061 0.88270 0.90508 0.95062 0.91417 0.90598 0.92138 0.92395 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.37 -4.26 9.71 -35.23 -0.34 -4.60 16 3 C 0.07 0.68 5.30 37.16 0.20 0.88 16 4 C 0.05 0.57 2.34 -67.60 -0.16 0.41 16 5 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 6 C 0.07 0.80 6.15 37.21 0.23 1.02 16 7 O -0.39 -4.79 10.83 -35.23 -0.38 -5.18 16 8 C 0.06 0.71 7.01 37.21 0.26 0.97 16 9 C 0.01 0.14 4.94 -3.71 -0.02 0.12 16 10 N -0.52 -6.80 4.63 -226.34 -1.05 -7.85 16 11 C 0.06 0.83 4.49 -3.82 -0.02 0.81 16 12 C -0.10 -1.65 4.49 -26.73 -0.12 -1.77 16 13 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 14 S -0.13 -3.45 21.44 -107.50 -2.30 -5.76 16 15 C -0.52 -14.93 9.50 30.94 0.29 -14.64 16 16 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 17 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 18 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 19 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.58 6.33 -51.93 -0.33 0.26 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.83 7.46 -51.93 -0.39 0.44 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.10 1.25 6.06 -51.93 -0.31 0.93 16 34 H 0.08 1.08 6.75 -51.93 -0.35 0.72 16 35 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 36 H 0.07 1.11 6.28 -51.93 -0.33 0.78 16 37 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 1.22 8.14 -51.91 -0.42 0.80 16 39 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 331.87 15.07 5.00 5.00 Total: -1.00 -32.04 331.87 -8.22 -40.26 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -6.74 Total: -2.15 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 1.89 Total: -10.93 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: -0.32 Total: -33.20 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.72 Total: -9.77 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -2.30 Total: -5.76 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.04 -8.22 -40.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933334937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.083 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds