Wall clock time and date at job start Mon Mar 30 2020 01:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.50452 * 185.00188 * 4 3 2 6 6 C 1.53099 * 109.50483 * 305.08529 * 4 3 2 7 7 O 1.43025 * 109.25696 * 176.78552 * 6 4 3 8 8 C 1.43018 * 113.73442 * 301.33190 * 7 6 4 9 9 C 1.53098 * 109.26118 * 58.67454 * 8 7 6 10 10 N 1.47011 * 109.50954 * 64.91705 * 4 3 2 11 11 C 1.46898 * 111.00137 * 57.67031 * 10 4 3 12 12 C 1.53002 * 109.46863 * 170.00464 * 11 10 4 13 13 C 1.53003 * 109.46802 * 180.02562 * 12 11 10 14 14 S 1.81002 * 109.47019 * 179.97438 * 13 12 11 15 15 C 1.76201 * 99.99814 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00356 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99639 * 179.97438 * 15 14 13 18 18 N 1.31630 * 120.00138 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99700 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47251 * 60.00394 * 19 17 15 21 21 H 1.48505 * 109.46919 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47237 * 299.99960 * 19 17 15 23 23 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47054 * 299.99711 * 1 2 3 25 25 H 1.09000 * 109.47187 * 59.99767 * 1 2 3 26 26 H 1.08997 * 109.47442 * 300.00036 * 3 2 1 27 27 H 1.08997 * 109.47171 * 60.00232 * 3 2 1 28 28 H 1.09000 * 109.51091 * 296.71963 * 6 4 3 29 29 H 1.08996 * 109.50795 * 56.80806 * 6 4 3 30 30 H 1.09004 * 109.50089 * 178.60449 * 8 7 6 31 31 H 1.08994 * 109.50621 * 298.73112 * 8 7 6 32 32 H 1.09003 * 109.50947 * 63.07998 * 9 8 7 33 33 H 1.08992 * 109.50665 * 183.17121 * 9 8 7 34 34 H 1.09004 * 109.46942 * 290.00450 * 11 10 4 35 35 H 1.08999 * 109.47036 * 50.00150 * 11 10 4 36 36 H 1.08995 * 109.46792 * 299.99963 * 12 11 10 37 37 H 1.08999 * 109.47551 * 60.00001 * 12 11 10 38 38 H 1.09004 * 109.46744 * 299.99828 * 13 12 11 39 39 H 1.08999 * 109.47295 * 59.99565 * 13 12 11 40 40 H 0.97002 * 120.00110 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9791 2.1762 0.0889 6 6 3.9800 0.3172 1.1799 7 8 5.3991 0.1458 1.1313 8 6 5.8646 -0.4611 -0.0772 9 6 5.4392 0.3986 -1.2704 10 7 3.9780 0.5605 -1.2560 11 6 3.5217 1.3345 -2.4182 12 6 4.2015 0.8047 -3.6824 13 6 3.7267 1.6113 -4.8928 14 16 4.5315 0.9851 -6.3883 15 6 3.8231 2.0612 -7.5903 16 1 3.1171 2.8200 -7.2866 17 6 4.1724 1.9337 -8.9275 18 7 5.0325 1.0086 -9.2978 19 14 3.4219 3.0750 -10.2018 20 1 3.7691 4.4808 -9.8729 21 1 3.9541 2.7346 -11.5457 22 1 1.9454 2.9163 -10.2000 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6886 1.8464 -0.8899 27 1 1.6886 1.8464 0.8900 28 1 3.7042 0.8054 2.1146 29 1 3.4930 -0.6561 1.1202 30 1 6.9518 -0.5357 -0.0516 31 1 5.4330 -1.4573 -0.1739 32 1 5.9139 1.3774 -1.2016 33 1 5.7428 -0.0889 -2.1968 34 1 2.4407 1.2361 -2.5185 35 1 3.7797 2.3844 -2.2795 36 1 5.2824 0.9030 -3.5820 37 1 3.9435 -0.2452 -3.8210 38 1 2.6458 1.5133 -4.9932 39 1 3.9851 2.6611 -4.7539 40 1 5.2763 0.9192 -10.2324 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933334937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:45 Heat of formation + Delta-G solvation = -114.926127 kcal Electronic energy + Delta-G solvation = -19574.744426 eV Core-core repulsion = 16514.897944 eV Total energy + Delta-G solvation = -3059.846483 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.97039 -38.53298 -37.43759 -34.62933 -34.22405 -32.73673 -29.38297 -28.05407 -27.75082 -26.60781 -25.60553 -23.70371 -22.23180 -20.92374 -19.57156 -17.73779 -17.61222 -17.27236 -16.90225 -16.54953 -16.36019 -16.27988 -16.08332 -15.70253 -15.20481 -14.95896 -14.80542 -14.57785 -13.65271 -13.49347 -13.38710 -13.11493 -12.99130 -12.90786 -12.63587 -12.50632 -12.41712 -12.17715 -12.05990 -11.62438 -11.49152 -11.31242 -11.13987 -10.73432 -10.41672 -10.32646 -9.33678 -8.67831 -8.37969 -6.14646 1.30518 1.40270 1.47057 1.72020 2.27351 2.66096 2.91314 2.93517 2.96277 3.30745 3.75887 3.84589 3.92664 3.96942 4.19034 4.21297 4.25158 4.30295 4.39781 4.44757 4.46523 4.53872 4.59067 4.63554 4.69116 4.74287 4.78441 4.84842 4.90998 4.95675 5.03412 5.15505 5.23314 5.38385 5.94383 5.97249 6.15278 6.16940 6.31875 7.04022 8.71259 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.025442 B = 0.003550 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.273208 B = 7884.920003 C = 8655.799023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.068 3.932 4 C 0.049 3.951 5 H 0.064 0.936 6 C 0.075 3.925 7 O -0.401 6.401 8 C 0.065 3.935 9 C 0.011 3.989 10 N -0.532 5.532 11 C 0.072 3.928 12 C -0.087 4.087 13 C -0.087 4.087 14 S -0.195 6.195 15 C -0.541 4.541 16 H 0.072 0.928 17 C 0.017 3.983 18 N -0.907 5.907 19 Si 0.993 3.007 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.264 1.264 23 H 0.091 0.909 24 H 0.055 0.945 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.060 0.940 30 H 0.115 0.885 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.647 0.652 21.701 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.009 4.009 4 C -0.059 4.059 5 H 0.082 0.918 6 C -0.002 4.002 7 O -0.320 6.320 8 C -0.011 4.011 9 C -0.117 4.117 10 N -0.258 5.258 11 C -0.057 4.057 12 C -0.125 4.125 13 C -0.236 4.236 14 S 0.034 5.966 15 C -0.689 4.689 16 H 0.091 0.909 17 C -0.188 4.188 18 N -0.544 5.544 19 Si 0.815 3.185 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.189 1.189 23 H 0.109 0.891 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.132 0.868 29 H 0.079 0.921 30 H 0.133 0.867 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.776 -0.861 21.546 22.085 hybrid contribution -1.165 2.420 -1.210 2.946 sum -5.940 1.559 20.336 21.243 Atomic orbital electron populations 1.22870 0.80167 1.03461 1.00495 1.87949 1.20560 1.27568 1.95445 1.22575 0.91474 0.85379 1.01448 1.22487 0.94933 0.97466 0.91051 0.91803 1.22661 0.80481 0.99763 0.97297 1.87939 1.22836 1.82129 1.39101 1.22758 1.00580 0.95373 0.82419 1.22931 0.87877 1.00073 1.00820 1.62238 1.11746 1.50215 1.01629 1.22037 1.00196 0.94767 0.88695 1.21285 1.00388 0.99489 0.91368 1.23135 1.01970 1.01708 0.96806 1.84625 1.61380 1.49927 1.00685 1.23015 1.30885 1.20473 0.94499 0.90935 1.26062 0.95241 0.97505 1.00042 1.70147 1.32519 1.33500 1.18189 0.85076 0.78701 0.78214 0.76491 1.18897 1.19922 1.18916 0.89095 0.92645 0.94248 0.92961 0.90436 0.86780 0.92127 0.86710 0.92361 0.94259 0.89052 0.90382 0.94426 0.91309 0.91572 0.91994 0.92029 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.40 -8.43 9.71 -148.98 -1.45 -9.88 16 3 C 0.07 1.23 5.30 71.98 0.38 1.62 16 4 C 0.05 1.02 2.34 44.93 0.11 1.12 16 5 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 6 C 0.07 1.48 6.15 72.02 0.44 1.93 16 7 O -0.40 -9.23 10.83 -148.98 -1.61 -10.84 16 8 C 0.07 1.38 7.01 72.01 0.50 1.89 16 9 C 0.01 0.26 4.94 86.31 0.43 0.68 16 10 N -0.53 -13.25 4.63 -870.00 -4.03 -17.28 16 11 C 0.07 1.92 4.49 86.30 0.39 2.31 16 12 C -0.09 -2.83 4.49 30.60 0.14 -2.70 16 13 C -0.09 -3.51 5.67 71.98 0.41 -3.10 16 14 S -0.19 -10.45 21.44 -56.49 -1.21 -11.66 16 15 C -0.54 -31.46 9.50 67.95 0.65 -30.81 16 16 H 0.07 4.05 7.80 -2.91 -0.02 4.02 16 17 C 0.02 0.94 5.49 84.86 0.47 1.41 16 18 N -0.91 -55.02 13.22 21.65 0.29 -54.74 16 19 Si 0.99 43.92 29.55 68.60 2.03 45.95 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 23 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.05 0.98 6.33 -2.39 -0.02 0.97 16 27 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.34 7.46 -2.39 -0.02 1.32 16 30 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 2.28 6.06 -2.39 -0.01 2.26 16 34 H 0.08 2.08 6.75 -2.38 -0.02 2.06 16 35 H 0.04 0.96 8.08 -2.39 -0.02 0.94 16 36 H 0.07 2.24 6.28 -2.39 -0.02 2.23 16 37 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.06 2.44 8.14 -2.40 -0.02 2.42 16 40 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -68.55 331.87 0.16 -68.39 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.00 Total: 14.08 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 5.15 Total: -24.00 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: -3.74 Total: -72.02 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -3.06 Total: -20.73 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -10.45 SS G_CDS: -1.21 Total: -11.66 kcal Total: -68.55 0.16 -68.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933334937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.533 kcal (2) G-P(sol) polarization free energy of solvation -68.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds