Wall clock time and date at job start Mon Mar 30 2020 01:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 119.99984 * 2 1 4 4 H 1.48500 * 109.47298 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46957 * 300.00121 * 3 2 1 6 6 H 1.48500 * 109.47121 * 59.99695 * 3 2 1 7 7 C 1.37880 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99870 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99653 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46807 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47192 * 180.02562 * 10 9 7 12 12 C 1.34775 * 120.00155 * 179.97438 * 11 10 9 13 13 O 1.21580 * 120.00110 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99709 * 179.97438 * 12 11 10 15 15 C 1.39390 * 119.99595 * 175.17117 * 14 12 11 16 16 C 1.39048 * 119.69842 * 185.13341 * 15 14 12 17 17 C 1.38344 * 119.10405 * 179.77504 * 16 15 14 18 18 C 1.38850 * 118.49462 * 0.49119 * 17 16 15 19 19 C 1.50698 * 120.34327 * 179.73118 * 18 17 16 20 20 C 1.52998 * 117.49831 * 188.64418 * 19 18 17 21 21 C 1.53000 * 117.50092 * 120.01937 * 19 18 17 22 22 C 1.38059 * 119.31003 * 359.74949 * 18 17 16 23 23 N 1.31940 * 120.85283 * 0.02562 * 22 18 17 24 24 H 0.97006 * 120.00475 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46610 * 60.00589 * 9 7 2 26 26 H 1.08997 * 109.47336 * 299.99896 * 9 7 2 27 27 H 1.08998 * 109.47492 * 60.00194 * 10 9 7 28 28 H 1.09003 * 109.47301 * 300.00361 * 10 9 7 29 29 H 0.97003 * 119.99706 * 0.02562 * 11 10 9 30 30 H 0.97001 * 119.99907 * 354.89324 * 14 12 11 31 31 H 1.08005 * 120.44465 * 359.97438 * 16 15 14 32 32 H 1.07998 * 120.75460 * 180.24347 * 17 16 15 33 33 H 1.09003 * 115.54745 * 334.34911 * 19 18 17 34 34 H 1.09002 * 117.50108 * 0.02562 * 20 19 18 35 35 H 1.09006 * 117.49498 * 145.01741 * 20 19 18 36 36 H 1.09003 * 117.50272 * 214.97703 * 21 19 18 37 37 H 1.09002 * 117.49766 * 0.02562 * 21 19 18 38 38 H 1.08003 * 119.57060 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 7 1.5129 -4.9308 0.0033 12 6 2.1868 -6.0980 0.0037 13 8 3.4026 -6.0979 0.0041 14 7 1.5129 -7.2652 0.0047 15 6 2.2061 -8.4702 -0.0965 16 6 1.5009 -9.6639 -0.2028 17 6 2.2014 -10.8523 -0.3073 18 6 3.5891 -10.8069 -0.2915 19 6 4.3936 -12.0768 -0.3965 20 6 5.9034 -11.9773 -0.1701 21 6 5.3548 -12.2084 -1.5796 22 6 4.2241 -9.5862 -0.1781 23 7 3.5296 -8.4683 -0.0846 24 1 -0.4851 0.8401 -0.0004 25 1 0.6241 -2.5574 -0.8881 26 1 0.6247 -2.5563 0.8919 27 1 2.8720 -3.6035 0.8926 28 1 2.8720 -3.6050 -0.8873 29 1 0.5428 -4.9308 0.0026 30 1 0.5458 -7.2668 0.0799 31 1 0.4209 -9.6629 -0.2070 32 1 1.6807 -11.7944 -0.3951 33 1 3.8913 -12.9812 -0.0531 34 1 6.3148 -10.9934 0.0552 35 1 6.3948 -12.8164 0.3225 36 1 5.4853 -13.1994 -2.0143 37 1 5.4055 -11.3762 -2.2818 38 1 5.3033 -9.5461 -0.1650 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933967886.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:16 Heat of formation + Delta-G solvation = 36.916427 kcal Electronic energy + Delta-G solvation = -19753.478850 eV Core-core repulsion = 16597.065555 eV Total energy + Delta-G solvation = -3156.413296 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.86313 -39.36565 -37.37689 -35.02851 -34.36248 -32.83672 -32.45811 -30.25134 -29.01801 -25.06397 -24.42383 -23.64053 -22.59657 -21.17347 -20.88487 -20.56021 -18.47115 -17.76097 -16.72352 -16.29084 -15.62717 -15.46005 -15.00941 -14.86175 -14.49131 -14.29280 -14.06585 -13.66611 -13.28059 -13.08444 -12.82071 -12.28279 -12.00441 -11.78100 -11.48829 -11.18262 -11.04364 -10.69857 -10.61295 -10.43589 -10.20682 -10.09873 -9.83381 -9.61538 -9.29462 -8.95663 -8.55635 -8.37962 -8.02477 -6.09248 -4.11670 1.01761 1.24773 2.69619 3.29142 3.32202 3.36765 3.42425 3.63902 4.01562 4.14739 4.33141 4.44134 4.56412 4.66586 4.68794 4.73740 4.87720 5.04578 5.13400 5.28139 5.33988 5.46982 5.64169 5.65952 5.82228 5.88344 6.10341 6.24250 6.27436 6.38988 6.73929 6.76885 6.94857 6.98749 7.54563 7.62618 7.89787 7.96720 8.25764 8.40503 8.91825 8.96609 9.53182 11.02472 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.045560 B = 0.002658 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.427154 B =10531.780983 C =11041.915861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.735 5.735 12 C 0.685 3.315 13 O -0.534 6.534 14 N -0.674 5.674 15 C 0.383 3.617 16 C -0.212 4.212 17 C -0.041 4.041 18 C -0.150 4.150 19 C -0.105 4.105 20 C -0.179 4.179 21 C -0.172 4.172 22 C 0.135 3.865 23 N -0.467 5.467 24 H 0.261 0.739 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.393 0.607 30 H 0.412 0.588 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.664 -25.800 -0.960 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.079 0.921 9 C -0.025 4.025 10 C 0.018 3.982 11 N -0.390 5.390 12 C 0.385 3.615 13 O -0.406 6.406 14 N -0.322 5.322 15 C 0.150 3.850 16 C -0.236 4.236 17 C -0.067 4.067 18 C -0.154 4.154 19 C -0.124 4.124 20 C -0.215 4.215 21 C -0.209 4.209 22 C -0.024 4.024 23 N -0.181 5.181 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.226 0.774 30 H 0.248 0.752 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.130 0.870 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.075 -24.670 -0.891 25.020 hybrid contribution -1.159 0.162 -0.024 1.171 sum 2.916 -24.507 -0.915 24.697 Atomic orbital electron populations 1.69961 1.06097 1.26759 1.50560 1.24999 0.94899 0.99439 0.95012 0.86452 0.80208 0.83296 0.77591 1.19541 1.20944 1.20948 1.21089 0.93337 0.90295 1.51108 0.92119 1.19337 0.94255 0.91057 0.97844 1.21641 0.95675 0.80047 1.00858 1.45608 1.09917 1.05139 1.78289 1.16178 0.86054 0.80143 0.79155 1.91019 1.10692 1.85286 1.53581 1.42887 1.10207 1.03525 1.75574 1.18261 0.88941 0.84752 0.93025 1.21392 1.00944 0.91593 1.09664 1.21062 0.93021 0.97775 0.94808 1.19989 0.94063 0.94898 1.06475 1.20812 0.91170 0.96335 1.04102 1.23080 0.95244 1.03635 0.99579 1.23060 1.03183 1.03262 0.91423 1.22583 1.00134 0.86244 0.93397 1.67790 1.05770 1.29873 1.14639 0.92915 0.95923 0.95930 0.92577 0.92600 0.77389 0.75248 0.84665 0.84709 0.87024 0.88190 0.88367 0.88495 0.88515 0.82856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.14 3.04 5.61 -4.04 -0.02 3.02 16 11 N -0.73 -13.09 5.56 -65.23 -0.36 -13.45 16 12 C 0.69 12.57 8.52 -86.91 -0.74 11.83 16 13 O -0.53 -12.08 14.61 5.30 0.08 -12.00 16 14 N -0.67 -9.32 5.39 -15.81 -0.09 -9.41 16 15 C 0.38 5.43 7.42 -154.71 -1.15 4.28 16 16 C -0.21 -2.17 9.94 -39.24 -0.39 -2.56 16 17 C -0.04 -0.37 9.88 -39.32 -0.39 -0.76 16 18 C -0.15 -1.53 5.63 -104.46 -0.59 -2.12 16 19 C -0.11 -0.81 6.06 -91.77 -0.56 -1.36 16 20 C -0.18 -1.25 9.86 -26.73 -0.26 -1.51 16 21 C -0.17 -1.20 10.17 -26.73 -0.27 -1.48 16 22 C 0.14 1.74 10.46 -17.57 -0.18 1.56 16 23 N -0.47 -7.70 7.89 -12.37 -0.10 -7.80 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.39 5.84 8.49 -40.82 -0.35 5.49 16 30 H 0.41 3.94 8.72 -40.82 -0.36 3.58 16 31 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.73 6.20 -51.93 -0.32 0.41 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.15 1.73 6.03 -52.48 -0.32 1.41 16 LS Contribution 327.54 15.07 4.94 4.94 Total: -1.00 -34.64 327.54 -10.03 -44.67 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.11 Total: 4.19 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -5.11 Total: -2.18 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.19 Total: -56.08 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.08 Total: -12.00 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.64 -10.03 -44.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933967886.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.585 kcal (2) G-P(sol) polarization free energy of solvation -34.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds