Wall clock time and date at job start Mon Mar 30 2020 01:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 119.99984 * 2 1 4 4 H 1.48500 * 109.47298 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46957 * 300.00121 * 3 2 1 6 6 H 1.48500 * 109.47121 * 59.99695 * 3 2 1 7 7 C 1.37880 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99870 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99653 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46807 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47192 * 180.02562 * 10 9 7 12 12 C 1.34775 * 120.00155 * 179.97438 * 11 10 9 13 13 O 1.21580 * 120.00110 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99709 * 179.97438 * 12 11 10 15 15 C 1.39390 * 119.99595 * 175.17117 * 14 12 11 16 16 C 1.39048 * 119.69842 * 185.13341 * 15 14 12 17 17 C 1.38344 * 119.10405 * 179.77504 * 16 15 14 18 18 C 1.38850 * 118.49462 * 0.49119 * 17 16 15 19 19 C 1.50698 * 120.34327 * 179.73118 * 18 17 16 20 20 C 1.52998 * 117.49831 * 188.64418 * 19 18 17 21 21 C 1.53000 * 117.50092 * 120.01937 * 19 18 17 22 22 C 1.38059 * 119.31003 * 359.74949 * 18 17 16 23 23 N 1.31940 * 120.85283 * 0.02562 * 22 18 17 24 24 H 0.97006 * 120.00475 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46610 * 60.00589 * 9 7 2 26 26 H 1.08997 * 109.47336 * 299.99896 * 9 7 2 27 27 H 1.08998 * 109.47492 * 60.00194 * 10 9 7 28 28 H 1.09003 * 109.47301 * 300.00361 * 10 9 7 29 29 H 0.97003 * 119.99706 * 0.02562 * 11 10 9 30 30 H 0.97001 * 119.99907 * 354.89324 * 14 12 11 31 31 H 1.08005 * 120.44465 * 359.97438 * 16 15 14 32 32 H 1.07998 * 120.75460 * 180.24347 * 17 16 15 33 33 H 1.09003 * 115.54745 * 334.34911 * 19 18 17 34 34 H 1.09002 * 117.50108 * 0.02562 * 20 19 18 35 35 H 1.09006 * 117.49498 * 145.01741 * 20 19 18 36 36 H 1.09003 * 117.50272 * 214.97703 * 21 19 18 37 37 H 1.09002 * 117.49766 * 0.02562 * 21 19 18 38 38 H 1.08003 * 119.57060 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 7 1.5129 -4.9308 0.0033 12 6 2.1868 -6.0980 0.0037 13 8 3.4026 -6.0979 0.0041 14 7 1.5129 -7.2652 0.0047 15 6 2.2061 -8.4702 -0.0965 16 6 1.5009 -9.6639 -0.2028 17 6 2.2014 -10.8523 -0.3073 18 6 3.5891 -10.8069 -0.2915 19 6 4.3936 -12.0768 -0.3965 20 6 5.9034 -11.9773 -0.1701 21 6 5.3548 -12.2084 -1.5796 22 6 4.2241 -9.5862 -0.1781 23 7 3.5296 -8.4683 -0.0846 24 1 -0.4851 0.8401 -0.0004 25 1 0.6241 -2.5574 -0.8881 26 1 0.6247 -2.5563 0.8919 27 1 2.8720 -3.6035 0.8926 28 1 2.8720 -3.6050 -0.8873 29 1 0.5428 -4.9308 0.0026 30 1 0.5458 -7.2668 0.0799 31 1 0.4209 -9.6629 -0.2070 32 1 1.6807 -11.7944 -0.3951 33 1 3.8913 -12.9812 -0.0531 34 1 6.3148 -10.9934 0.0552 35 1 6.3948 -12.8164 0.3225 36 1 5.4853 -13.1994 -2.0143 37 1 5.4055 -11.3762 -2.2818 38 1 5.3033 -9.5461 -0.1650 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933967886.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:16 Heat of formation + Delta-G solvation = 14.283691 kcal Electronic energy + Delta-G solvation = -19754.460280 eV Core-core repulsion = 16597.065555 eV Total energy + Delta-G solvation = -3157.394725 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.90888 -40.57241 -38.15134 -36.63165 -35.66351 -34.79989 -33.35011 -31.78142 -30.34095 -26.86753 -25.29154 -24.81533 -23.16684 -22.90501 -21.93912 -21.67920 -19.70750 -18.92189 -18.44779 -17.47271 -16.86477 -16.58502 -16.38102 -16.19447 -15.64669 -15.46375 -15.30421 -15.08683 -14.59345 -14.32396 -14.08734 -13.61676 -13.21584 -12.98103 -12.63279 -12.52190 -12.45918 -12.28977 -12.15949 -11.69907 -11.55326 -11.32747 -11.30350 -11.19073 -10.63433 -10.61104 -10.05084 -10.04370 -9.01135 -8.24727 -6.34641 0.11536 0.42257 1.40788 1.40948 1.48149 1.56111 2.08451 2.40495 2.79342 3.06011 3.10188 3.20429 3.56067 3.74222 3.93641 4.04474 4.06114 4.19358 4.27275 4.42441 4.47418 4.50060 4.74498 4.82016 4.85272 4.93715 5.07021 5.20910 5.26146 5.28379 5.31121 5.41251 5.49138 5.58617 5.74881 5.82473 5.88906 6.16372 6.77656 6.81213 7.26713 7.34556 7.57992 8.87372 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.045560 B = 0.002658 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.427154 B =10531.780983 C =11041.915861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.025 3.975 10 C 0.162 3.838 11 N -0.727 5.727 12 C 0.687 3.313 13 O -0.583 6.583 14 N -0.658 5.658 15 C 0.344 3.656 16 C -0.192 4.192 17 C -0.039 4.039 18 C -0.138 4.138 19 C -0.110 4.110 20 C -0.182 4.182 21 C -0.168 4.168 22 C 0.107 3.893 23 N -0.521 5.521 24 H 0.266 0.734 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.409 0.591 30 H 0.432 0.568 31 H 0.173 0.827 32 H 0.177 0.823 33 H 0.137 0.863 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.896 -27.981 -1.077 28.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.037 3.963 11 N -0.383 5.383 12 C 0.386 3.614 13 O -0.458 6.458 14 N -0.309 5.309 15 C 0.112 3.888 16 C -0.215 4.215 17 C -0.065 4.065 18 C -0.142 4.142 19 C -0.128 4.128 20 C -0.219 4.219 21 C -0.205 4.205 22 C -0.050 4.050 23 N -0.236 5.236 24 H 0.075 0.925 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.245 0.755 30 H 0.271 0.729 31 H 0.190 0.810 32 H 0.194 0.806 33 H 0.155 0.845 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.100 0.900 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.263 -26.915 -1.009 27.131 hybrid contribution -0.911 0.689 0.001 1.143 sum 2.351 -26.225 -1.008 26.350 Atomic orbital electron populations 1.70054 1.07466 1.27947 1.51069 1.25857 0.95822 1.03044 0.94429 0.85397 0.78922 0.78788 0.77939 1.19112 1.20144 1.20151 1.21483 0.93570 0.91918 1.51444 0.92432 1.19131 0.94183 0.91454 0.96530 1.21098 0.94684 0.80858 0.99618 1.45246 1.10511 1.04088 1.78456 1.16285 0.85548 0.81028 0.78518 1.90985 1.12938 1.86184 1.55701 1.42532 1.11025 1.02228 1.75076 1.18634 0.88869 0.85664 0.95617 1.21766 1.02682 0.90143 1.06942 1.21588 0.92572 0.99047 0.93248 1.20295 0.95130 0.94798 1.03935 1.20951 0.91270 0.95842 1.04765 1.23152 0.95054 1.03762 0.99889 1.23092 1.02559 1.03787 0.91087 1.22696 1.00318 0.86821 0.95193 1.67572 1.07638 1.32174 1.16178 0.92513 0.97098 0.97072 0.93829 0.93901 0.75536 0.72858 0.80982 0.80551 0.84541 0.89382 0.86636 0.86498 0.89963 0.83019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.40 13.29 21.45 0.28 -54.12 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.55 -30.92 9.11 25.60 0.23 -30.68 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.02 1.25 5.09 29.85 0.15 1.40 16 10 C 0.16 7.23 5.61 86.38 0.48 7.71 16 11 N -0.73 -26.32 5.56 -478.54 -2.66 -28.98 16 12 C 0.69 25.75 8.52 179.05 1.53 27.27 16 13 O -0.58 -27.53 14.61 -3.97 -0.06 -27.59 16 14 N -0.66 -17.95 5.39 -322.20 -1.74 -19.69 16 15 C 0.34 9.58 7.42 132.92 0.99 10.57 16 16 C -0.19 -3.39 9.94 22.49 0.22 -3.17 16 17 C -0.04 -0.58 9.88 22.44 0.22 -0.36 16 18 C -0.14 -2.57 5.63 -19.76 -0.11 -2.68 16 19 C -0.11 -1.39 6.06 -11.54 -0.07 -1.46 16 20 C -0.18 -2.27 9.86 30.59 0.30 -1.97 16 21 C -0.17 -2.03 10.17 30.60 0.31 -1.72 16 22 C 0.11 2.83 10.46 84.63 0.89 3.71 16 23 N -0.52 -17.76 7.89 -193.05 -1.52 -19.28 16 24 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 25 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.41 12.08 8.49 -92.71 -0.79 11.29 16 30 H 0.43 7.61 8.72 -92.71 -0.81 6.81 16 31 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 1.31 6.20 -2.39 -0.01 1.30 16 35 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.15 3.72 6.03 -2.91 -0.02 3.70 16 Total: -1.00 -77.34 327.54 1.44 -75.90 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -0.50 Total: 18.10 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 5.61 Total: 9.50 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -5.64 Total: -122.06 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.06 Total: -27.59 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -77.34 1.44 -75.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933967886.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.184 kcal (2) G-P(sol) polarization free energy of solvation -77.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds