Wall clock time and date at job start Mon Mar 30 2020 01:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34715 * 117.00141 * 2 1 4 4 O 1.21471 * 120.00010 * 359.97438 * 3 2 1 5 5 C 1.47743 * 120.00040 * 179.97438 * 3 2 1 6 6 C 1.39666 * 120.03452 * 0.04315 * 5 3 2 7 7 C 1.37981 * 119.74256 * 180.10235 * 6 5 3 8 8 C 1.38105 * 120.28265 * 359.92243 * 7 6 5 9 9 C 1.39095 * 120.72348 * 359.85524 * 8 7 6 10 10 C 1.39145 * 119.24218 * 0.29558 * 9 8 7 11 11 N 1.40106 * 110.94210 * 180.48374 * 9 8 7 12 12 C 1.46898 * 111.00118 * 103.46218 * 11 9 8 13 13 C 1.52994 * 109.47101 * 170.14564 * 12 11 9 14 14 C 1.50699 * 109.47469 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99705 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00445 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99848 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00439 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46754 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47314 * 119.99768 * 18 16 14 21 21 H 1.48496 * 109.47669 * 240.00310 * 18 16 14 22 22 C 1.47893 * 107.88032 * 341.64534 * 11 9 8 23 23 C 1.51626 * 131.36947 * 179.60262 * 8 7 6 24 24 H 1.09008 * 109.47024 * 300.00261 * 1 2 3 25 25 H 1.08999 * 109.47124 * 59.99988 * 1 2 3 26 26 H 1.08994 * 109.47307 * 180.02562 * 1 2 3 27 27 H 1.08005 * 120.12785 * 0.10887 * 6 5 3 28 28 H 1.07992 * 119.85933 * 180.19681 * 7 6 5 29 29 H 1.07998 * 119.96380 * 179.75635 * 10 9 8 30 30 H 1.08996 * 109.47443 * 290.14865 * 12 11 9 31 31 H 1.09003 * 109.46695 * 50.14916 * 12 11 9 32 32 H 1.08999 * 109.47717 * 300.00417 * 13 12 11 33 33 H 1.09007 * 109.47020 * 60.00054 * 13 12 11 34 34 H 0.96997 * 120.00342 * 180.02562 * 17 16 14 35 35 H 1.08998 * 110.77817 * 269.02947 * 22 11 9 36 36 H 1.09003 * 110.93354 * 145.68146 * 22 11 9 37 37 H 1.09005 * 110.74196 * 314.62099 * 23 8 7 38 38 H 1.09000 * 110.74268 * 77.94498 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2191 -0.0005 5 6 3.5390 1.2776 0.0006 6 6 4.3004 0.1067 0.0002 7 6 5.6779 0.1859 0.0029 8 6 6.3047 1.4165 0.0043 9 6 5.5618 2.5924 0.0000 10 6 4.1723 2.5186 0.0006 11 7 6.4005 3.7147 -0.0086 12 6 6.4560 4.3202 -1.3458 13 6 7.1739 5.6689 -1.2655 14 6 7.2303 6.2904 -2.6372 15 1 6.7978 5.7748 -3.4819 16 6 7.8350 7.5168 -2.8141 17 7 8.3630 8.1440 -1.7858 18 14 7.9055 8.2869 -4.5145 19 1 7.2451 7.3863 -5.4935 20 1 7.2038 9.5955 -4.4948 21 1 9.3230 8.4911 -4.9071 22 6 7.7437 3.2811 0.4331 23 6 7.7735 1.7930 0.0151 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.8128 -0.8570 -0.0023 28 1 6.2685 -0.7182 -0.0006 29 1 3.5840 3.4243 0.0013 30 1 6.9988 3.6594 -2.0217 31 1 5.4429 4.4695 -1.7193 32 1 6.6312 6.3298 -0.5897 33 1 8.1870 5.5196 -0.8919 34 1 8.7881 9.0070 -1.9101 35 1 7.8466 3.3813 1.5135 36 1 8.5232 3.8429 -0.0817 37 1 8.3193 1.1975 0.7469 38 1 8.2083 1.6797 -0.9779 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934165872.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:11 Heat of formation + Delta-G solvation = -49.870706 kcal Electronic energy + Delta-G solvation = -20507.698660 eV Core-core repulsion = 17315.229241 eV Total energy + Delta-G solvation = -3192.469419 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.89757 -40.11925 -36.92890 -36.35495 -33.52372 -32.22019 -30.59285 -29.70778 -28.14673 -27.63282 -24.63490 -23.85474 -22.29792 -21.72741 -20.56831 -19.84160 -17.76532 -17.12747 -16.46791 -16.44104 -15.93241 -15.50044 -15.16878 -14.58580 -14.40101 -13.81808 -13.58989 -13.57435 -13.32333 -12.94855 -12.48503 -12.26751 -12.26230 -12.18796 -11.73791 -11.23928 -11.12634 -10.99150 -10.96473 -10.80374 -10.62509 -10.58410 -10.13035 -9.72495 -9.19689 -9.03919 -8.90636 -8.38223 -7.62641 -6.03842 -4.06830 0.66528 1.37788 2.47812 2.51994 3.29534 3.37239 3.41189 3.70749 4.01765 4.43731 4.57270 4.64694 4.90171 4.93292 4.98756 4.99638 5.18388 5.25515 5.30765 5.32879 5.33783 5.62217 5.79068 5.85642 5.97995 6.05189 6.11474 6.19381 6.25097 6.27739 6.37268 6.50304 6.67869 6.83265 7.22367 7.47689 7.64900 7.71828 7.79293 8.00223 8.35825 8.99920 9.57401 11.07426 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.020639 B = 0.003977 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.317778 B = 7039.316063 C = 7971.625578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.511 3.489 4 O -0.503 6.503 5 C -0.115 4.115 6 C -0.085 4.085 7 C -0.104 4.104 8 C -0.108 4.108 9 C 0.099 3.901 10 C -0.053 4.053 11 N -0.493 5.493 12 C 0.065 3.935 13 C 0.028 3.972 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.048 3.952 23 C -0.114 4.114 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.101 0.899 27 H 0.137 0.863 28 H 0.127 0.873 29 H 0.140 0.860 30 H 0.031 0.969 31 H 0.065 0.935 32 H 0.027 0.973 33 H 0.019 0.981 34 H 0.261 0.739 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.807 -19.207 5.121 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.357 3.643 4 O -0.391 6.391 5 C -0.117 4.117 6 C -0.104 4.104 7 C -0.123 4.123 8 C -0.111 4.111 9 C 0.001 3.999 10 C -0.073 4.073 11 N -0.209 5.209 12 C -0.058 4.058 13 C -0.010 4.010 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.078 4.078 23 C -0.152 4.152 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.119 0.881 27 H 0.155 0.845 28 H 0.145 0.855 29 H 0.157 0.843 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.105 0.895 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.110 -18.277 5.481 20.733 hybrid contribution 0.112 0.034 -1.362 1.367 sum -7.998 -18.243 4.119 20.341 Atomic orbital electron populations 1.23269 0.76108 1.03611 1.02726 1.86533 1.23439 1.32766 1.84569 1.21209 0.89124 0.81342 0.72675 1.90853 1.66764 1.35976 1.45555 1.18664 0.88589 0.94452 1.09949 1.21210 0.93354 0.97562 0.98277 1.20329 0.93893 0.96476 1.01558 1.21487 0.96564 0.93872 0.99173 1.19637 0.92563 0.90278 0.97388 1.20515 0.92306 0.97065 0.97459 1.60267 1.08157 1.24201 1.28277 1.22538 1.01404 0.98007 0.83881 1.19147 0.95218 0.89286 0.97323 1.21178 1.37211 1.03858 0.93978 0.92640 1.24984 0.95351 0.97060 0.96830 1.69976 1.37989 1.15338 1.29770 0.86525 0.77687 0.79299 0.84434 1.19730 1.20921 1.20990 1.23221 0.90678 0.92288 1.01661 1.21823 0.92091 0.98312 1.02957 0.91827 0.91786 0.88054 0.84522 0.85491 0.84262 0.95024 0.91604 0.95486 0.96246 0.92964 0.89784 0.88269 0.89526 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.08 9.81 -40.53 -0.40 -4.48 16 3 C 0.51 7.26 7.90 34.62 0.27 7.53 16 4 O -0.50 -8.46 16.12 -19.24 -0.31 -8.77 16 5 C -0.11 -1.62 5.86 -105.08 -0.62 -2.24 16 6 C -0.09 -1.00 9.62 -39.14 -0.38 -1.38 16 7 C -0.10 -1.21 10.01 -39.72 -0.40 -1.61 16 8 C -0.11 -1.51 6.23 -103.90 -0.65 -2.16 16 9 C 0.10 1.64 5.53 -83.42 -0.46 1.18 16 10 C -0.05 -0.86 9.62 -38.84 -0.37 -1.23 16 11 N -0.49 -9.13 5.04 -169.06 -0.85 -9.98 16 12 C 0.07 1.38 4.69 -3.83 -0.02 1.36 16 13 C 0.03 0.71 5.01 -27.89 -0.14 0.57 16 14 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 18 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.05 0.76 6.71 -2.44 -0.02 0.74 16 23 C -0.11 -1.46 6.92 -26.59 -0.18 -1.64 16 24 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.14 1.27 7.61 -52.48 -0.40 0.87 16 28 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.14 2.39 7.63 -52.49 -0.40 1.99 16 30 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 31 H 0.07 1.42 8.06 -51.93 -0.42 1.00 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.02 0.51 6.59 -51.93 -0.34 0.17 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.10 1.66 6.27 -51.93 -0.33 1.33 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 323.62 15.07 4.88 4.88 Total: -1.00 -31.95 323.62 -8.49 -40.44 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -5.23 Total: -1.90 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -2.30 Total: -10.91 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.12 Total: -35.78 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.71 Total: -13.25 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.95 -8.49 -40.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934165872.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.426 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds