Wall clock time and date at job start Mon Mar 30 2020 01:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34715 * 117.00141 * 2 1 4 4 O 1.21471 * 120.00010 * 359.97438 * 3 2 1 5 5 C 1.47743 * 120.00040 * 179.97438 * 3 2 1 6 6 C 1.39666 * 120.03452 * 0.04315 * 5 3 2 7 7 C 1.37981 * 119.74256 * 180.10235 * 6 5 3 8 8 C 1.38105 * 120.28265 * 359.92243 * 7 6 5 9 9 C 1.39095 * 120.72348 * 359.85524 * 8 7 6 10 10 C 1.39145 * 119.24218 * 0.29558 * 9 8 7 11 11 N 1.40106 * 110.94210 * 180.48374 * 9 8 7 12 12 C 1.46898 * 111.00118 * 103.46218 * 11 9 8 13 13 C 1.52994 * 109.47101 * 170.14564 * 12 11 9 14 14 C 1.50699 * 109.47469 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99705 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00445 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99848 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00439 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46754 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47314 * 119.99768 * 18 16 14 21 21 H 1.48496 * 109.47669 * 240.00310 * 18 16 14 22 22 C 1.47893 * 107.88032 * 341.64534 * 11 9 8 23 23 C 1.51626 * 131.36947 * 179.60262 * 8 7 6 24 24 H 1.09008 * 109.47024 * 300.00261 * 1 2 3 25 25 H 1.08999 * 109.47124 * 59.99988 * 1 2 3 26 26 H 1.08994 * 109.47307 * 180.02562 * 1 2 3 27 27 H 1.08005 * 120.12785 * 0.10887 * 6 5 3 28 28 H 1.07992 * 119.85933 * 180.19681 * 7 6 5 29 29 H 1.07998 * 119.96380 * 179.75635 * 10 9 8 30 30 H 1.08996 * 109.47443 * 290.14865 * 12 11 9 31 31 H 1.09003 * 109.46695 * 50.14916 * 12 11 9 32 32 H 1.08999 * 109.47717 * 300.00417 * 13 12 11 33 33 H 1.09007 * 109.47020 * 60.00054 * 13 12 11 34 34 H 0.96997 * 120.00342 * 180.02562 * 17 16 14 35 35 H 1.08998 * 110.77817 * 269.02947 * 22 11 9 36 36 H 1.09003 * 110.93354 * 145.68146 * 22 11 9 37 37 H 1.09005 * 110.74196 * 314.62099 * 23 8 7 38 38 H 1.09000 * 110.74268 * 77.94498 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2191 -0.0005 5 6 3.5390 1.2776 0.0006 6 6 4.3004 0.1067 0.0002 7 6 5.6779 0.1859 0.0029 8 6 6.3047 1.4165 0.0043 9 6 5.5618 2.5924 0.0000 10 6 4.1723 2.5186 0.0006 11 7 6.4005 3.7147 -0.0086 12 6 6.4560 4.3202 -1.3458 13 6 7.1739 5.6689 -1.2655 14 6 7.2303 6.2904 -2.6372 15 1 6.7978 5.7748 -3.4819 16 6 7.8350 7.5168 -2.8141 17 7 8.3630 8.1440 -1.7858 18 14 7.9055 8.2869 -4.5145 19 1 7.2451 7.3863 -5.4935 20 1 7.2038 9.5955 -4.4948 21 1 9.3230 8.4911 -4.9071 22 6 7.7437 3.2811 0.4331 23 6 7.7735 1.7930 0.0151 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.8128 -0.8570 -0.0023 28 1 6.2685 -0.7182 -0.0006 29 1 3.5840 3.4243 0.0013 30 1 6.9988 3.6594 -2.0217 31 1 5.4429 4.4695 -1.7193 32 1 6.6312 6.3298 -0.5897 33 1 8.1870 5.5196 -0.8919 34 1 8.7881 9.0070 -1.9101 35 1 7.8466 3.3813 1.5135 36 1 8.5232 3.8429 -0.0817 37 1 8.3193 1.1975 0.7469 38 1 8.2083 1.6797 -0.9779 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934165872.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:11 Heat of formation + Delta-G solvation = -68.987419 kcal Electronic energy + Delta-G solvation = -20508.527623 eV Core-core repulsion = 17315.229241 eV Total energy + Delta-G solvation = -3193.298382 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.03214 -41.22966 -38.06901 -37.46495 -35.47484 -33.66481 -32.11137 -30.81553 -29.65326 -28.44156 -26.50047 -25.01635 -23.47130 -23.19932 -21.64019 -21.33804 -19.02456 -18.41799 -18.13349 -17.43317 -17.10255 -16.81409 -16.59657 -16.28342 -15.51667 -15.21360 -14.79923 -14.55974 -14.43034 -14.37496 -14.18220 -13.62407 -13.35992 -13.19429 -13.03321 -12.96396 -12.80052 -12.49230 -12.20201 -12.06406 -12.01115 -11.84913 -11.68460 -11.57642 -11.32181 -10.59224 -10.41005 -9.96370 -8.91765 -8.22845 -6.34541 -0.41882 0.28245 1.38658 1.39357 1.40109 1.52854 1.57413 2.37777 2.61403 2.81819 3.10652 3.50125 3.67909 3.79291 3.97190 4.08199 4.17879 4.24386 4.31679 4.33311 4.42136 4.47796 4.55692 4.69889 4.77811 4.79586 4.89127 4.94079 5.07078 5.12949 5.21462 5.29045 5.35187 5.42813 5.56025 5.66981 5.74807 5.98230 6.21939 6.27687 6.61065 6.81150 7.34714 8.89300 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.020639 B = 0.003977 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.317778 B = 7039.316063 C = 7971.625578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.514 3.486 4 O -0.541 6.541 5 C -0.126 4.126 6 C -0.063 4.063 7 C -0.092 4.092 8 C -0.103 4.103 9 C 0.064 3.936 10 C -0.073 4.073 11 N -0.515 5.515 12 C 0.087 3.913 13 C 0.038 3.962 14 C -0.546 4.546 15 H 0.058 0.942 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.966 3.034 19 H -0.263 1.263 20 H -0.279 1.279 21 H -0.274 1.274 22 C 0.042 3.958 23 C -0.102 4.102 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.141 0.859 27 H 0.172 0.828 28 H 0.171 0.829 29 H 0.111 0.889 30 H 0.036 0.964 31 H 0.051 0.949 32 H -0.011 1.011 33 H 0.006 0.994 34 H 0.265 0.735 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.123 0.877 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.636 -22.591 4.449 24.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.361 3.639 4 O -0.433 6.433 5 C -0.128 4.128 6 C -0.081 4.081 7 C -0.110 4.110 8 C -0.106 4.106 9 C -0.032 4.032 10 C -0.093 4.093 11 N -0.232 5.232 12 C -0.038 4.038 13 C 0.000 4.000 14 C -0.584 4.584 15 H 0.076 0.924 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.791 3.209 19 H -0.187 1.187 20 H -0.205 1.205 21 H -0.199 1.199 22 C -0.084 4.084 23 C -0.140 4.140 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.159 0.841 27 H 0.190 0.810 28 H 0.189 0.811 29 H 0.130 0.870 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.008 0.992 33 H 0.024 0.976 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.141 0.859 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.949 -21.706 4.820 23.613 hybrid contribution -0.024 0.990 -1.081 1.466 sum -7.973 -20.716 3.739 22.510 Atomic orbital electron populations 1.23631 0.74161 1.06156 1.02537 1.86514 1.25260 1.30868 1.83795 1.21293 0.89224 0.81626 0.71793 1.90836 1.67541 1.37403 1.47484 1.18762 0.88924 0.94576 1.10543 1.21634 0.93459 0.97794 0.95221 1.20780 0.94028 0.96894 0.99305 1.21721 0.96777 0.93802 0.98284 1.19656 0.92624 0.90658 1.00244 1.20450 0.92384 0.97306 0.99159 1.60113 1.10156 1.26387 1.26550 1.22050 0.99685 0.95999 0.86044 1.18943 0.94387 0.91044 0.95581 1.21586 1.37328 1.04559 0.94958 0.92360 1.25932 0.94737 0.97563 1.01196 1.70103 1.38700 1.15858 1.32210 0.85384 0.78127 0.78228 0.79211 1.18732 1.20492 1.19927 1.23274 0.88665 0.94496 1.01998 1.21789 0.91852 0.96146 1.04170 0.91992 0.92156 0.84068 0.81043 0.81127 0.87045 0.94567 0.93041 0.99212 0.97582 0.92638 0.88757 0.90173 0.85914 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.35 -7.22 9.81 -56.25 -0.55 -7.77 16 3 C 0.51 14.35 7.90 70.34 0.56 14.91 16 4 O -0.54 -18.84 16.12 19.93 0.32 -18.51 16 5 C -0.13 -3.46 5.86 -20.16 -0.12 -3.58 16 6 C -0.06 -1.23 9.62 22.55 0.22 -1.02 16 7 C -0.09 -1.73 10.01 22.18 0.22 -1.50 16 8 C -0.10 -2.64 6.23 -19.39 -0.12 -2.76 16 9 C 0.06 2.17 5.53 38.24 0.21 2.38 16 10 C -0.07 -2.44 9.62 22.75 0.22 -2.22 16 11 N -0.51 -19.89 5.04 -688.78 -3.47 -23.36 16 12 C 0.09 3.87 4.69 86.30 0.40 4.28 16 13 C 0.04 2.05 5.01 29.85 0.15 2.20 16 14 C -0.55 -31.59 9.11 25.60 0.23 -31.36 16 15 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 16 C 0.00 0.24 5.46 84.65 0.46 0.70 16 17 N -0.93 -56.85 13.29 21.45 0.28 -56.57 16 18 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 C 0.04 1.32 6.71 86.65 0.58 1.90 16 23 C -0.10 -2.36 6.92 30.68 0.21 -2.15 16 24 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.17 2.22 7.61 -2.91 -0.02 2.20 16 28 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 29 H 0.11 4.24 7.63 -2.91 -0.02 4.22 16 30 H 0.04 1.54 8.03 -2.39 -0.02 1.52 16 31 H 0.05 2.37 8.06 -2.39 -0.02 2.35 16 32 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H 0.01 0.33 6.59 -2.38 -0.02 0.32 16 34 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.08 2.79 6.27 -2.39 -0.01 2.78 16 37 H 0.12 1.98 8.14 -2.38 -0.02 1.97 16 38 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -73.09 323.62 4.09 -69.00 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.05 Total: 7.15 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 4.43 Total: -16.62 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -3.19 Total: -79.93 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.23 Total: -26.28 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -73.09 4.09 -69.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934165872.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.012 kcal (2) G-P(sol) polarization free energy of solvation -73.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds