Wall clock time and date at job start Mon Mar 30 2020 02:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86799 * 119.99970 * 2 1 4 4 H 1.48499 * 109.47398 * 269.99824 * 3 2 1 5 5 H 1.48502 * 109.47088 * 29.99602 * 3 2 1 6 6 H 1.48498 * 109.47444 * 149.99690 * 3 2 1 7 7 C 1.38943 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00307 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00347 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00677 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99906 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00592 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47352 * 180.02562 * 12 10 9 14 14 C 1.46900 * 110.99920 * 174.64212 * 13 12 10 15 15 H 1.08994 * 109.47056 * 25.87839 * 14 13 12 16 16 C 1.50703 * 109.46860 * 145.87661 * 14 13 12 17 17 C 1.38651 * 120.78744 * 219.99942 * 16 14 13 18 18 C 1.38207 * 119.16200 * 180.02562 * 17 16 14 19 19 N 1.31874 * 120.75997 * 0.25390 * 18 17 16 20 20 C 1.31865 * 121.72810 * 359.47397 * 19 18 17 21 21 C 1.38203 * 120.76656 * 0.52829 * 20 19 18 22 22 C 1.52998 * 109.46988 * 265.87571 * 14 13 12 23 23 C 1.53004 * 117.49945 * 14.16232 * 22 14 13 24 24 C 1.53001 * 117.49884 * 305.54058 * 22 14 13 25 25 H 0.96994 * 119.99874 * 0.02562 * 1 2 3 26 26 H 0.97009 * 120.00069 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.47233 * 59.99640 * 12 10 9 28 28 H 1.09007 * 109.46592 * 299.99694 * 12 10 9 29 29 H 1.00900 * 110.99607 * 298.59486 * 13 12 10 30 30 H 1.07999 * 120.42100 * 0.03985 * 17 16 14 31 31 H 1.07991 * 119.61960 * 179.97438 * 18 17 16 32 32 H 1.07998 * 119.61964 * 180.26939 * 20 19 18 33 33 H 1.08000 * 120.42659 * 179.72134 * 21 20 19 34 34 H 1.08993 * 115.54991 * 159.87213 * 22 14 13 35 35 H 1.08995 * 117.49475 * 359.97438 * 23 22 14 36 36 H 1.09000 * 117.49683 * 145.01520 * 23 22 14 37 37 H 1.09002 * 117.49751 * 214.98069 * 24 22 14 38 38 H 1.08996 * 117.49938 * 359.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2103 -3.5579 0.0031 12 6 1.2439 -4.8630 0.0032 13 7 2.1985 -5.9795 0.0050 14 6 1.5026 -7.2668 0.1336 15 1 0.4874 -7.1711 -0.2512 16 6 2.2414 -8.3180 -0.6540 17 6 1.5511 -9.2700 -1.3887 18 6 2.2625 -10.2189 -2.0984 19 7 3.5811 -10.2282 -2.0777 20 6 4.2702 -9.3355 -1.3945 21 6 3.6273 -8.3565 -0.6608 22 6 1.4531 -7.6747 1.6074 23 6 1.7873 -6.6042 2.6483 24 6 2.7790 -7.7352 2.3686 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3907 0.0016 27 1 0.6175 -4.9213 -0.8869 28 1 0.6169 -4.9201 0.8931 29 1 2.7767 -5.9620 -0.8217 30 1 0.4713 -9.2699 -1.4065 31 1 1.7324 -10.9641 -2.6728 32 1 5.3495 -9.3723 -1.4049 33 1 4.1972 -7.6307 -0.0996 34 1 0.6900 -8.4084 1.8667 35 1 2.0428 -5.6096 2.2831 36 1 1.2437 -6.6335 3.5926 37 1 2.8879 -8.5086 3.1289 38 1 3.6865 -7.4849 1.8193 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934691673.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:39 Heat of formation + Delta-G solvation = 30.682441 kcal Electronic energy + Delta-G solvation = -20675.567257 eV Core-core repulsion = 17518.883635 eV Total energy + Delta-G solvation = -3156.683622 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.48143 -38.60059 -37.59949 -34.47605 -33.83898 -32.44619 -31.29233 -31.19158 -27.94568 -25.64668 -24.05565 -23.24698 -22.70519 -21.98221 -19.69668 -19.30182 -17.93867 -17.17501 -16.59053 -15.98909 -15.76706 -15.41705 -14.89001 -14.61296 -14.26229 -14.12340 -13.79255 -13.66576 -13.49609 -13.07353 -12.55225 -12.26673 -11.81782 -11.59351 -11.54220 -11.38793 -11.10081 -10.95374 -10.40689 -10.24781 -10.20036 -10.01253 -9.64584 -9.52382 -9.44615 -9.21625 -8.52418 -8.13709 -7.97954 -6.43375 -3.84240 1.06027 1.15587 3.16689 3.25619 3.31437 3.71231 3.88550 3.90805 4.02274 4.25167 4.37940 4.59474 4.77064 4.88769 5.04587 5.05419 5.12996 5.16693 5.22896 5.30906 5.48454 5.54782 5.61268 5.69618 5.77685 5.86613 5.90784 5.94976 6.06459 6.18083 6.29549 6.37292 6.61229 6.64223 7.11923 7.53635 7.53949 7.88330 8.04363 8.59326 9.16303 9.52431 10.03713 10.74341 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027329 B = 0.003729 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.296792 B = 7505.944015 C = 7814.149868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.581 6.581 12 C 0.048 3.952 13 N -0.657 5.657 14 C 0.153 3.847 15 H 0.064 0.936 16 C -0.038 4.038 17 C -0.168 4.168 18 C 0.093 3.907 19 N -0.490 5.490 20 C 0.095 3.905 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.162 4.162 24 C -0.166 4.166 25 H 0.271 0.729 26 H 0.392 0.608 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.351 0.649 30 H 0.132 0.868 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.516 -17.113 0.164 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.227 3.773 11 O -0.465 6.465 12 C -0.085 4.085 13 N -0.290 5.290 14 C 0.043 3.957 15 H 0.081 0.919 16 C -0.046 4.046 17 C -0.189 4.189 18 C -0.063 4.063 19 N -0.200 5.200 20 C -0.061 4.061 21 C -0.171 4.171 22 C -0.172 4.172 23 C -0.199 4.199 24 C -0.203 4.203 25 H 0.081 0.919 26 H 0.225 0.775 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.171 0.829 30 H 0.150 0.850 31 H 0.170 0.830 32 H 0.172 0.828 33 H 0.163 0.837 34 H 0.118 0.882 35 H 0.135 0.865 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.755 -17.514 0.362 17.534 hybrid contribution -1.227 1.394 -0.369 1.893 sum -0.472 -16.120 -0.007 16.127 Atomic orbital electron populations 1.69611 1.05941 1.28170 1.50592 1.25256 0.95625 0.99718 0.97300 0.85863 0.79270 0.80820 0.78379 1.20434 1.20919 1.19382 1.19695 0.93362 0.82218 1.47601 0.87924 1.41861 1.09190 1.04597 1.64363 1.19754 0.88381 0.84591 0.84609 1.90530 1.13670 1.87041 1.55288 1.21807 0.94268 0.90935 1.01446 1.60129 1.22204 0.99506 1.47138 1.19933 0.95493 0.87272 0.93016 0.91853 1.20415 0.94222 0.95562 0.94427 1.22032 1.01318 0.96627 0.98907 1.22678 0.90070 0.97015 0.96587 1.67649 1.08822 1.24558 1.18921 1.22785 1.00402 0.90454 0.92482 1.22181 0.94719 1.00109 1.00064 1.22217 1.00110 1.03281 0.91550 1.23020 1.02318 0.96635 0.97924 1.22805 0.94005 1.01131 1.02393 0.91869 0.77493 0.93759 0.89162 0.82854 0.85011 0.83020 0.82797 0.83714 0.88244 0.86479 0.89943 0.90011 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.25 9.68 -14.94 -0.14 -8.39 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -13.99 5.29 -10.96 -0.06 -14.05 16 10 C 0.44 10.07 7.83 -10.99 -0.09 9.98 16 11 O -0.58 -15.30 15.89 5.54 0.09 -15.21 16 12 C 0.05 0.80 5.09 -4.98 -0.03 0.78 16 13 N -0.66 -9.83 4.11 -109.22 -0.45 -10.28 16 14 C 0.15 1.84 2.73 -68.86 -0.19 1.65 16 15 H 0.06 0.72 7.63 -51.93 -0.40 0.32 16 16 C -0.04 -0.43 4.69 -104.31 -0.49 -0.92 16 17 C -0.17 -1.72 9.78 -39.44 -0.39 -2.10 16 18 C 0.09 0.98 11.18 -17.54 -0.20 0.78 16 19 N -0.49 -5.99 10.36 -13.26 -0.14 -6.13 16 20 C 0.10 1.08 11.18 -17.55 -0.20 0.88 16 21 C -0.15 -1.75 8.07 -39.44 -0.32 -2.07 16 22 C -0.15 -1.79 5.78 -90.62 -0.52 -2.31 16 23 C -0.16 -2.14 9.34 -26.73 -0.25 -2.39 16 24 C -0.17 -2.02 9.52 -26.73 -0.25 -2.27 16 25 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.39 9.33 7.90 -40.82 -0.32 9.00 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 1.41 7.16 -51.92 -0.37 1.03 16 29 H 0.35 5.57 7.51 -39.29 -0.30 5.27 16 30 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 32 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.15 1.72 6.49 -52.49 -0.34 1.38 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.12 1.91 5.94 -51.93 -0.31 1.60 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.10 1.29 6.39 -51.93 -0.33 0.96 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -30.70 321.17 -8.00 -38.70 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -4.84 Total: 15.72 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -3.15 Total: -5.88 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.08 Total: -54.06 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.09 Total: -15.21 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.70 -8.00 -38.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934691673.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.385 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds