Wall clock time and date at job start Mon Mar 30 2020 02:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86799 * 119.99970 * 2 1 4 4 H 1.48499 * 109.47398 * 269.99824 * 3 2 1 5 5 H 1.48502 * 109.47088 * 29.99602 * 3 2 1 6 6 H 1.48498 * 109.47444 * 149.99690 * 3 2 1 7 7 C 1.38943 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00307 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00347 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00677 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99906 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00592 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47352 * 180.02562 * 12 10 9 14 14 C 1.46900 * 110.99920 * 174.64212 * 13 12 10 15 15 H 1.08994 * 109.47056 * 25.87839 * 14 13 12 16 16 C 1.50703 * 109.46860 * 145.87661 * 14 13 12 17 17 C 1.38651 * 120.78744 * 219.99942 * 16 14 13 18 18 C 1.38207 * 119.16200 * 180.02562 * 17 16 14 19 19 N 1.31874 * 120.75997 * 0.25390 * 18 17 16 20 20 C 1.31865 * 121.72810 * 359.47397 * 19 18 17 21 21 C 1.38203 * 120.76656 * 0.52829 * 20 19 18 22 22 C 1.52998 * 109.46988 * 265.87571 * 14 13 12 23 23 C 1.53004 * 117.49945 * 14.16232 * 22 14 13 24 24 C 1.53001 * 117.49884 * 305.54058 * 22 14 13 25 25 H 0.96994 * 119.99874 * 0.02562 * 1 2 3 26 26 H 0.97009 * 120.00069 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.47233 * 59.99640 * 12 10 9 28 28 H 1.09007 * 109.46592 * 299.99694 * 12 10 9 29 29 H 1.00900 * 110.99607 * 298.59486 * 13 12 10 30 30 H 1.07999 * 120.42100 * 0.03985 * 17 16 14 31 31 H 1.07991 * 119.61960 * 179.97438 * 18 17 16 32 32 H 1.07998 * 119.61964 * 180.26939 * 20 19 18 33 33 H 1.08000 * 120.42659 * 179.72134 * 21 20 19 34 34 H 1.08993 * 115.54991 * 159.87213 * 22 14 13 35 35 H 1.08995 * 117.49475 * 359.97438 * 23 22 14 36 36 H 1.09000 * 117.49683 * 145.01520 * 23 22 14 37 37 H 1.09002 * 117.49751 * 214.98069 * 24 22 14 38 38 H 1.08996 * 117.49938 * 359.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2103 -3.5579 0.0031 12 6 1.2439 -4.8630 0.0032 13 7 2.1985 -5.9795 0.0050 14 6 1.5026 -7.2668 0.1336 15 1 0.4874 -7.1711 -0.2512 16 6 2.2414 -8.3180 -0.6540 17 6 1.5511 -9.2700 -1.3887 18 6 2.2625 -10.2189 -2.0984 19 7 3.5811 -10.2282 -2.0777 20 6 4.2702 -9.3355 -1.3945 21 6 3.6273 -8.3565 -0.6608 22 6 1.4531 -7.6747 1.6074 23 6 1.7873 -6.6042 2.6483 24 6 2.7790 -7.7352 2.3686 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3907 0.0016 27 1 0.6175 -4.9213 -0.8869 28 1 0.6169 -4.9201 0.8931 29 1 2.7767 -5.9620 -0.8217 30 1 0.4713 -9.2699 -1.4065 31 1 1.7324 -10.9641 -2.6728 32 1 5.3495 -9.3723 -1.4049 33 1 4.1972 -7.6307 -0.0996 34 1 0.6900 -8.4084 1.8667 35 1 2.0428 -5.6096 2.2831 36 1 1.2437 -6.6335 3.5926 37 1 2.8879 -8.5086 3.1289 38 1 3.6865 -7.4849 1.8193 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934691673.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:39 Heat of formation + Delta-G solvation = 10.274339 kcal Electronic energy + Delta-G solvation = -20676.452218 eV Core-core repulsion = 17518.883635 eV Total energy + Delta-G solvation = -3157.568583 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.37280 -40.15704 -38.88246 -36.05588 -35.34712 -33.55987 -33.16045 -32.09040 -29.20980 -27.19751 -25.50211 -24.25185 -23.58437 -22.97424 -21.08654 -20.66116 -19.91041 -18.31151 -17.64666 -17.37291 -16.77595 -16.51907 -16.34415 -16.04393 -15.79496 -15.44579 -15.12171 -14.66182 -14.56148 -14.28056 -13.97119 -13.64587 -13.40359 -13.13849 -12.84049 -12.48464 -12.42698 -12.41341 -12.12648 -12.05702 -11.49963 -11.17370 -10.97811 -10.55348 -10.32366 -10.29840 -10.02915 -10.00443 -9.38698 -8.46339 -5.94763 0.24931 0.29597 1.37834 1.41819 1.54282 2.06632 2.28755 2.80156 2.88402 3.00291 3.21186 3.47777 3.62159 3.69818 3.89817 4.03368 4.16630 4.25410 4.28322 4.29701 4.36787 4.41956 4.54015 4.63106 4.68378 4.76084 4.90826 4.98072 5.06334 5.11198 5.33717 5.40573 5.41619 5.53096 5.81598 5.89278 6.08880 6.32072 6.60854 7.06168 7.13564 7.57440 8.12915 8.71084 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027329 B = 0.003729 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.296792 B = 7505.944015 C = 7814.149868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.440 3.560 11 O -0.620 6.620 12 C 0.065 3.935 13 N -0.665 5.665 14 C 0.156 3.844 15 H 0.081 0.919 16 C -0.046 4.046 17 C -0.163 4.163 18 C 0.088 3.912 19 N -0.512 5.512 20 C 0.086 3.914 21 C -0.159 4.159 22 C -0.139 4.139 23 C -0.175 4.175 24 C -0.166 4.166 25 H 0.277 0.723 26 H 0.396 0.604 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.344 0.656 30 H 0.159 0.841 31 H 0.180 0.820 32 H 0.168 0.832 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.878 -18.272 -0.038 18.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.228 3.772 11 O -0.507 6.507 12 C -0.067 4.067 13 N -0.298 5.298 14 C 0.046 3.954 15 H 0.099 0.901 16 C -0.054 4.054 17 C -0.183 4.183 18 C -0.068 4.068 19 N -0.222 5.222 20 C -0.070 4.070 21 C -0.179 4.179 22 C -0.158 4.158 23 C -0.212 4.212 24 C -0.203 4.203 25 H 0.087 0.913 26 H 0.230 0.770 27 H 0.085 0.915 28 H 0.124 0.876 29 H 0.164 0.836 30 H 0.177 0.823 31 H 0.197 0.803 32 H 0.185 0.815 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.630 -18.692 0.162 18.703 hybrid contribution -0.782 1.677 -0.311 1.877 sum -1.411 -17.014 -0.149 17.073 Atomic orbital electron populations 1.69668 1.06784 1.29248 1.50441 1.26001 0.96515 1.02315 0.96338 0.84958 0.77918 0.77041 0.78618 1.19679 1.19563 1.19832 1.19645 0.92659 0.84069 1.49847 0.90404 1.41924 1.09302 1.04698 1.65199 1.20822 0.88241 0.86024 0.82129 1.90500 1.15797 1.87940 1.56420 1.21621 0.93854 0.88089 1.03135 1.60080 1.22338 1.00402 1.46970 1.19991 0.96026 0.85795 0.93544 0.90114 1.20415 0.94082 0.95938 0.94995 1.22294 1.02660 0.95630 0.97729 1.23190 0.89667 0.97524 0.96452 1.67690 1.09957 1.25027 1.19478 1.23019 1.01254 0.90316 0.92383 1.22141 0.95135 1.00195 1.00462 1.22330 1.00105 1.02495 0.90848 1.22893 1.03752 0.95403 0.99153 1.22807 0.93721 1.00966 1.02812 0.91330 0.77022 0.91541 0.87562 0.83615 0.82307 0.80318 0.81477 0.84781 0.85917 0.89820 0.88693 0.88433 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.38 13.05 21.66 0.28 -49.10 16 2 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 3 Si 0.99 42.85 29.55 68.60 2.03 44.87 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.33 -18.80 9.68 84.04 0.81 -17.98 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.57 -29.05 5.29 -306.99 -1.62 -30.67 16 10 C 0.44 20.45 7.83 87.66 0.69 21.14 16 11 O -0.62 -33.77 15.89 -3.09 -0.05 -33.82 16 12 C 0.07 2.13 5.09 85.56 0.44 2.56 16 13 N -0.67 -19.53 4.11 -499.46 -2.05 -21.58 16 14 C 0.16 3.42 2.73 44.17 0.12 3.54 16 15 H 0.08 1.54 7.63 -2.39 -0.02 1.52 16 16 C -0.05 -0.96 4.69 -19.66 -0.09 -1.05 16 17 C -0.16 -2.83 9.78 22.36 0.22 -2.61 16 18 C 0.09 1.62 11.18 84.68 0.95 2.57 16 19 N -0.51 -11.76 10.36 -195.85 -2.03 -13.79 16 20 C 0.09 1.90 11.18 84.68 0.95 2.85 16 21 C -0.16 -3.62 8.07 22.36 0.18 -3.44 16 22 C -0.14 -2.94 5.78 -10.79 -0.06 -3.00 16 23 C -0.17 -4.46 9.34 30.60 0.29 -4.18 16 24 C -0.17 -3.86 9.52 30.60 0.29 -3.57 16 25 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 26 H 0.40 19.03 7.90 -92.70 -0.73 18.29 16 27 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.11 3.17 7.16 -2.38 -0.02 3.15 16 29 H 0.34 10.94 7.51 -89.69 -0.67 10.26 16 30 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 31 H 0.18 2.16 8.06 -2.92 -0.02 2.14 16 32 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.13 3.29 6.49 -2.91 -0.02 3.27 16 34 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.08 2.75 5.94 -2.39 -0.01 2.74 16 36 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.08 2.21 6.39 -2.39 -0.02 2.20 16 Total: -1.00 -66.97 321.17 1.49 -65.49 By element: Atomic # 1 Polarization: 42.25 SS G_CDS: -0.31 Total: 41.95 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 5.24 Total: -3.35 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -5.42 Total: -115.14 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -0.05 Total: -33.82 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -66.97 1.49 -65.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934691673.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.760 kcal (2) G-P(sol) polarization free energy of solvation -66.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds