Wall clock time and date at job start Mon Mar 30 2020 02:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 119.99700 * 2 1 4 4 H 1.48505 * 109.47102 * 269.99829 * 3 2 1 5 5 H 1.48503 * 109.47119 * 30.00001 * 3 2 1 6 6 H 1.48502 * 109.47136 * 149.99897 * 3 2 1 7 7 C 1.38949 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99308 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00438 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00028 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00045 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00139 * 179.97438 * 10 9 7 13 13 N 1.46893 * 109.47319 * 179.97438 * 12 10 9 14 14 C 1.46907 * 111.00279 * 174.68621 * 13 12 10 15 15 H 1.09008 * 109.46609 * 325.74512 * 14 13 12 16 16 C 1.50696 * 109.47163 * 205.75081 * 14 13 12 17 17 C 1.38653 * 120.79062 * 139.99908 * 16 14 13 18 18 C 1.38200 * 119.16343 * 179.97438 * 17 16 14 19 19 N 1.31866 * 120.76451 * 0.02861 * 18 17 16 20 20 C 1.31871 * 121.72886 * 359.94393 * 19 18 17 21 21 C 1.38207 * 120.76008 * 0.05308 * 20 19 18 22 22 C 1.52997 * 109.46974 * 85.74352 * 14 13 12 23 23 C 1.53002 * 117.50122 * 252.64208 * 22 14 13 24 24 C 1.53000 * 117.49456 * 184.02048 * 22 14 13 25 25 H 0.96995 * 120.00577 * 359.97438 * 1 2 3 26 26 H 0.96998 * 119.99779 * 359.97438 * 9 7 2 27 27 H 1.09008 * 109.46991 * 59.99120 * 12 10 9 28 28 H 1.09001 * 109.46963 * 299.99698 * 12 10 9 29 29 H 1.00897 * 111.00139 * 298.64063 * 13 12 10 30 30 H 1.08005 * 120.41585 * 359.70179 * 17 16 14 31 31 H 1.08000 * 119.62232 * 179.97438 * 18 17 16 32 32 H 1.07993 * 119.62164 * 180.02562 * 20 19 18 33 33 H 1.08006 * 120.41813 * 179.97438 * 21 20 19 34 34 H 1.08999 * 115.54677 * 38.35716 * 22 14 13 35 35 H 1.08997 * 117.49851 * 0.02562 * 23 22 14 36 36 H 1.09000 * 117.49275 * 145.02297 * 23 22 14 37 37 H 1.08999 * 117.49991 * 214.98031 * 24 22 14 38 38 H 1.08996 * 117.50265 * 0.02562 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0010 9 7 1.3235 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2440 -4.8630 0.0022 13 7 2.1986 -5.9794 0.0027 14 6 1.5029 -7.2670 0.1303 15 1 0.6258 -7.1446 0.7658 16 6 2.4319 -8.2811 0.7463 17 6 1.9688 -9.1891 1.6862 18 6 2.8500 -10.1049 2.2291 19 7 4.1168 -10.1207 1.8633 20 6 4.5919 -9.2728 0.9721 21 6 3.7700 -8.3286 0.3863 22 6 1.0661 -7.7500 -1.2542 23 6 -0.4254 -7.6814 -1.5884 24 6 0.2383 -9.0347 -1.3254 25 1 -0.4851 0.8399 0.0004 26 1 0.3535 -2.3907 0.0005 27 1 0.6176 -4.9213 -0.8880 28 1 0.6171 -4.9202 0.8920 29 1 2.7768 -5.9612 -0.8240 30 1 0.9334 -9.1780 1.9934 31 1 2.4973 -10.8153 2.9621 32 1 5.6353 -9.3163 0.6971 33 1 4.1651 -7.6366 -0.3428 34 1 1.7726 -7.5611 -2.0625 35 1 -1.0954 -7.2918 -0.8221 36 1 -0.7004 -7.4471 -2.6168 37 1 0.3997 -9.6907 -2.1808 38 1 0.0044 -9.5355 -0.3860 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934691679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:42 Heat of formation + Delta-G solvation = 3.900198 kcal Electronic energy + Delta-G solvation = -20442.062923 eV Core-core repulsion = 17284.217936 eV Total energy + Delta-G solvation = -3157.844987 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.25427 -40.13803 -38.91705 -36.16119 -35.56394 -33.51954 -33.16908 -32.02688 -29.22148 -27.02235 -25.27772 -24.18939 -23.48958 -23.11927 -21.42017 -21.04272 -19.91453 -18.16673 -17.58740 -17.07562 -16.99167 -16.49716 -16.34636 -16.20313 -15.80143 -15.45044 -14.92695 -14.65217 -14.51577 -14.28582 -14.00653 -13.68184 -13.44631 -13.09851 -12.89355 -12.68372 -12.41797 -12.38107 -12.24937 -12.12685 -11.50560 -11.43059 -11.12732 -10.48757 -10.39513 -10.26858 -10.00784 -9.97908 -9.34356 -8.46503 -5.95023 0.30447 0.39241 1.37874 1.41857 1.54410 2.06235 2.28846 2.76599 2.85318 3.00502 3.20875 3.50209 3.67300 3.71446 3.82333 3.96427 4.04014 4.18352 4.26174 4.32750 4.35858 4.36332 4.52410 4.56755 4.63420 4.78479 4.80175 4.97573 5.01942 5.10480 5.19974 5.25565 5.40789 5.44451 5.86029 5.89675 6.08748 6.32162 6.60797 7.10790 7.13323 7.57091 8.12802 8.70860 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024674 B = 0.003711 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.546199 B = 7542.408396 C = 8276.832136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.334 4.334 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.438 3.562 11 O -0.623 6.623 12 C 0.070 3.930 13 N -0.670 5.670 14 C 0.162 3.838 15 H 0.099 0.901 16 C -0.022 4.022 17 C -0.168 4.168 18 C 0.087 3.913 19 N -0.516 5.516 20 C 0.083 3.917 21 C -0.160 4.160 22 C -0.193 4.193 23 C -0.172 4.172 24 C -0.160 4.160 25 H 0.278 0.722 26 H 0.397 0.603 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.346 0.654 30 H 0.156 0.844 31 H 0.179 0.821 32 H 0.167 0.833 33 H 0.130 0.870 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.396 -18.733 -0.971 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.509 6.509 12 C -0.063 4.063 13 N -0.300 5.300 14 C 0.052 3.948 15 H 0.117 0.883 16 C -0.031 4.031 17 C -0.188 4.188 18 C -0.069 4.069 19 N -0.225 5.225 20 C -0.073 4.073 21 C -0.180 4.180 22 C -0.213 4.213 23 C -0.209 4.209 24 C -0.197 4.197 25 H 0.087 0.913 26 H 0.230 0.770 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.166 0.834 30 H 0.174 0.826 31 H 0.196 0.804 32 H 0.184 0.816 33 H 0.148 0.852 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.027 -19.106 0.081 19.214 hybrid contribution -0.838 1.640 -1.359 2.289 sum -2.864 -17.466 -1.279 17.746 Atomic orbital electron populations 1.69663 1.06768 1.29278 1.50366 1.26003 0.96528 1.02306 0.96292 0.84956 0.77893 0.77009 0.78660 1.19585 1.19527 1.19904 1.19654 0.92672 0.84104 1.49938 0.90450 1.41915 1.09318 1.04665 1.65145 1.20905 0.88264 0.86166 0.82133 1.90496 1.15929 1.87991 1.56524 1.21513 0.93727 0.87802 1.03217 1.60112 1.22164 1.00456 1.47297 1.20081 0.94392 0.86251 0.94091 0.88266 1.20243 0.94285 0.94320 0.94240 1.22215 1.02526 0.96474 0.97604 1.23143 0.88435 0.97372 0.97972 1.67668 1.16597 1.24632 1.13649 1.22984 1.00910 0.90947 0.92414 1.22033 0.94508 0.99506 1.01956 1.23010 0.95556 1.04835 0.97860 1.23113 0.93577 1.00909 1.03291 1.22934 1.02610 0.90305 1.03869 0.91300 0.76950 0.91110 0.87835 0.83397 0.82626 0.80436 0.81627 0.85207 0.88211 0.87932 0.88361 0.88321 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.29 13.05 21.66 0.28 -49.00 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 3 Si 0.99 42.87 29.55 68.60 2.03 44.89 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.57 -29.14 5.29 -306.98 -1.62 -30.76 16 10 C 0.44 20.58 7.83 87.66 0.69 21.26 16 11 O -0.62 -34.46 15.89 -3.07 -0.05 -34.51 16 12 C 0.07 2.28 6.00 85.56 0.51 2.80 16 13 N -0.67 -20.15 5.26 -499.46 -2.63 -22.78 16 14 C 0.16 3.58 2.42 44.17 0.11 3.69 16 15 H 0.10 2.01 7.39 -2.38 -0.02 1.99 16 16 C -0.02 -0.50 4.73 -19.67 -0.09 -0.60 16 17 C -0.17 -3.22 9.68 22.36 0.22 -3.00 16 18 C 0.09 1.76 11.18 84.68 0.95 2.71 16 19 N -0.52 -12.80 10.36 -195.85 -2.03 -14.83 16 20 C 0.08 1.99 11.18 84.68 0.95 2.94 16 21 C -0.16 -3.93 9.43 22.36 0.21 -3.72 16 22 C -0.19 -3.64 5.10 -10.79 -0.06 -3.70 16 23 C -0.17 -2.79 10.18 30.60 0.31 -2.48 16 24 C -0.16 -2.42 9.98 30.59 0.31 -2.11 16 25 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 26 H 0.40 19.04 7.90 -92.71 -0.73 18.31 16 27 H 0.07 2.02 8.13 -2.38 -0.02 2.01 16 28 H 0.10 3.05 7.92 -2.39 -0.02 3.03 16 29 H 0.35 10.84 7.73 -89.70 -0.69 10.14 16 30 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 31 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.17 3.24 8.06 -2.91 -0.02 3.21 16 33 H 0.13 3.21 7.40 -2.91 -0.02 3.19 16 34 H 0.10 2.04 7.97 -2.39 -0.02 2.02 16 35 H 0.10 1.55 8.07 -2.39 -0.02 1.54 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.10 1.40 8.04 -2.39 -0.02 1.38 16 Total: -1.00 -68.78 330.08 1.02 -67.76 By element: Atomic # 1 Polarization: 40.08 SS G_CDS: -0.34 Total: 39.74 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 5.38 Total: -0.50 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -5.99 Total: -117.37 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.05 Total: -34.51 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -68.78 1.02 -67.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934691679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.656 kcal (2) G-P(sol) polarization free energy of solvation -68.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds