Wall clock time and date at job start Mon Mar 30 2020 02:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00046 * 2 1 4 4 H 1.48502 * 109.47232 * 270.00252 * 3 2 1 5 5 H 1.48505 * 109.47267 * 30.00281 * 3 2 1 6 6 H 1.48497 * 109.47339 * 150.00040 * 3 2 1 7 7 C 1.38813 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99418 * 170.57478 * 7 2 1 9 9 N 1.36935 * 120.00060 * 350.56917 * 7 2 1 10 10 C 1.48140 * 127.83689 * 164.36029 * 9 7 2 11 11 C 1.57742 * 104.61770 * 139.76116 * 10 9 7 12 12 H 1.09004 * 120.32670 * 244.67023 * 11 10 9 13 13 C 1.54137 * 103.42794 * 24.77697 * 11 10 9 14 14 H 1.09011 * 121.78940 * 220.64069 * 13 11 10 15 15 C 1.48146 * 127.83791 * 344.35796 * 9 7 2 16 16 C 1.52999 * 116.08343 * 87.40804 * 11 10 9 17 17 H 1.09003 * 117.44170 * 16.83180 * 16 11 10 18 18 N 1.46499 * 117.44535 * 161.57616 * 16 11 10 19 19 C 1.34770 * 120.00183 * 223.99695 * 18 16 11 20 20 O 1.21282 * 120.00095 * 0.02562 * 19 18 16 21 21 C 1.50698 * 120.00274 * 179.97438 * 19 18 16 22 22 C 1.50699 * 109.47534 * 180.02562 * 21 19 18 23 23 C 1.34853 * 125.89030 * 84.99723 * 22 21 19 24 24 C 1.40886 * 107.41541 * 179.75009 * 23 22 21 25 25 C 1.34854 * 107.41933 * 0.22813 * 24 23 22 26 26 N 1.36342 * 108.21832 * 0.02562 * 25 24 23 27 27 H 0.96993 * 125.63529 * 180.02562 * 26 25 24 28 28 H 0.97005 * 119.99445 * 359.97438 * 1 2 3 29 29 H 1.09005 * 110.41029 * 259.19695 * 10 9 7 30 30 H 1.09007 * 110.40953 * 21.50939 * 10 9 7 31 31 H 1.08998 * 110.40813 * 100.80583 * 15 9 7 32 32 H 1.09001 * 110.50948 * 338.41803 * 15 9 7 33 33 H 0.96996 * 119.99618 * 44.00369 * 18 16 11 34 34 H 1.08997 * 109.46803 * 60.00118 * 21 19 18 35 35 H 1.08998 * 109.47182 * 300.00417 * 21 19 18 36 36 H 1.07996 * 126.28742 * 0.02562 * 23 22 21 37 37 H 1.08006 * 126.29129 * 180.20735 * 24 23 22 38 38 H 1.08001 * 125.88714 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0793 -1.2084 -0.1537 9 7 1.3394 -2.3801 0.1933 10 6 1.8185 -3.7546 -0.0819 11 6 1.2951 -4.6099 1.1359 12 1 1.9999 -5.0720 1.8272 13 6 0.0731 -3.8133 1.6338 14 1 -0.1327 -3.6819 2.6962 15 6 -0.0302 -2.5690 0.7256 16 6 -0.1133 -5.1906 0.9942 17 1 -0.5438 -5.2256 -0.0066 18 7 -0.4776 -6.3014 1.8771 19 6 -1.1345 -7.3687 1.3814 20 8 -1.4237 -7.4098 0.2043 21 6 -1.5088 -8.5116 2.2895 22 6 -2.2289 -9.5700 1.4944 23 6 -1.6472 -10.5559 0.7815 24 6 -2.6780 -11.3219 0.2021 25 6 -3.8502 -10.7718 0.5787 26 7 -3.5809 -9.6940 1.3690 27 1 -4.2420 -9.1141 1.7783 28 1 -0.4849 0.8401 0.0004 29 1 1.4047 -4.1205 -1.0216 30 1 2.9079 -3.7785 -0.1123 31 1 -0.7327 -2.7497 -0.0880 32 1 -0.3376 -1.6992 1.3062 33 1 -0.2461 -6.2687 2.8185 34 1 -2.1606 -8.1466 3.0832 35 1 -0.6064 -8.9380 2.7277 36 1 -0.5863 -10.7293 0.6780 37 1 -2.5524 -12.1898 -0.4283 38 1 -4.8328 -11.1239 0.3013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962667352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:03 Heat of formation + Delta-G solvation = 73.113846 kcal Electronic energy + Delta-G solvation = -20244.909728 eV Core-core repulsion = 17090.066070 eV Total energy + Delta-G solvation = -3154.843658 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.23675 -39.62501 -38.15534 -34.45088 -32.79915 -31.84845 -30.98221 -30.18129 -27.04663 -26.78821 -25.44771 -22.10752 -20.77623 -20.57300 -20.40141 -20.00296 -19.30360 -17.67958 -17.02714 -16.81859 -16.07692 -15.23437 -14.71873 -14.36757 -13.85415 -13.74403 -13.49361 -13.42152 -13.16724 -12.78295 -12.64926 -12.32678 -12.22992 -11.82097 -11.48604 -11.44309 -10.98724 -10.83783 -10.36434 -10.21095 -10.17167 -9.83099 -9.73666 -9.23057 -8.89190 -8.74852 -8.32216 -8.10626 -6.88189 -5.81332 -3.15363 2.11057 2.63888 2.90036 3.17828 3.35218 3.39117 3.43062 3.44817 4.32110 4.45774 4.53615 4.87588 4.89859 5.10523 5.16634 5.21447 5.36525 5.39592 5.45000 5.57077 5.65315 5.73419 5.85917 6.13911 6.16136 6.23529 6.25320 6.51126 6.68868 6.80853 6.88443 6.91734 7.05639 7.33211 7.47682 7.51412 7.59734 7.69911 8.18726 8.30301 9.09380 9.72285 10.49420 11.33197 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.052961 B = 0.002936 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.560605 B = 9534.458057 C = 9647.855879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.157 3.843 11 C -0.185 4.185 12 H 0.107 0.893 13 C -0.181 4.181 14 H 0.100 0.900 15 C 0.186 3.814 16 C 0.094 3.906 17 H 0.131 0.869 18 N -0.700 5.700 19 C 0.511 3.489 20 O -0.525 6.525 21 C -0.071 4.071 22 C 0.032 3.968 23 C -0.180 4.180 24 C -0.201 4.201 25 C -0.013 4.013 26 N -0.553 5.553 27 H 0.411 0.589 28 H 0.255 0.745 29 H 0.031 0.969 30 H 0.050 0.950 31 H 0.026 0.974 32 H 0.090 0.910 33 H 0.398 0.602 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.459 -19.127 7.820 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.030 3.970 11 C -0.206 4.206 12 H 0.125 0.875 13 C -0.202 4.202 14 H 0.118 0.882 15 C 0.060 3.940 16 C -0.012 4.012 17 H 0.148 0.852 18 N -0.349 5.349 19 C 0.296 3.704 20 O -0.400 6.400 21 C -0.112 4.112 22 C -0.081 4.081 23 C -0.205 4.205 24 C -0.226 4.226 25 C -0.145 4.145 26 N -0.148 5.148 27 H 0.247 0.753 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.108 0.892 33 H 0.232 0.768 34 H 0.115 0.885 35 H 0.132 0.868 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.802 -18.778 6.980 20.857 hybrid contribution 0.233 1.107 0.763 1.364 sum -5.569 -17.671 7.743 20.081 Atomic orbital electron populations 1.69907 1.05078 1.25454 1.55677 1.24908 0.95648 0.98021 1.01724 0.86108 0.78699 0.83171 0.77691 1.21404 1.21558 1.20567 1.18986 0.90889 0.82291 1.43377 0.90512 1.45117 1.13697 0.99992 1.72804 1.21710 0.97218 0.85648 0.92421 1.25074 0.90423 1.02193 1.02941 0.87548 1.24610 1.02574 0.92545 1.00469 0.88155 1.21052 0.87020 0.92421 0.93554 1.21883 0.98480 0.85166 0.95684 0.85186 1.45407 1.58449 1.18824 1.12234 1.20504 0.77889 0.82918 0.89041 1.90752 1.53167 1.79248 1.16819 1.20126 1.01687 0.92388 0.96989 1.19494 0.82892 0.99859 1.05817 1.20628 0.99011 0.98048 1.02787 1.20863 0.92044 1.03244 1.06463 1.21770 0.99770 0.92149 1.00776 1.41872 1.06609 1.25273 1.41011 0.75291 0.93536 0.95172 0.93110 0.95651 0.89167 0.76833 0.88454 0.86780 0.84991 0.84871 0.82065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.81 10.88 55.49 0.60 -26.20 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.87 29.56 -169.99 -5.03 16.84 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.34 10.35 -15.06 -0.16 -6.50 16 8 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 9 N -0.59 -15.27 3.38 -166.70 -0.56 -15.83 16 10 C 0.16 3.35 7.10 -0.55 0.00 3.35 16 11 C -0.18 -3.27 7.33 -87.43 -0.64 -3.91 16 12 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 13 C -0.18 -3.37 6.97 -89.30 -0.62 -3.99 16 14 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 15 C 0.19 4.47 5.69 -2.41 -0.01 4.46 16 16 C 0.09 1.58 5.93 -67.93 -0.40 1.17 16 17 H 0.13 2.55 7.40 -51.93 -0.38 2.16 16 18 N -0.70 -8.96 5.56 -53.81 -0.30 -9.26 16 19 C 0.51 6.89 7.82 -10.99 -0.09 6.80 16 20 O -0.52 -9.66 15.60 5.56 0.09 -9.57 16 21 C -0.07 -0.64 6.24 -29.04 -0.18 -0.82 16 22 C 0.03 0.36 5.66 -81.79 -0.46 -0.10 16 23 C -0.18 -2.19 10.77 -39.78 -0.43 -2.62 16 24 C -0.20 -2.26 10.86 -39.78 -0.43 -2.69 16 25 C -0.01 -0.13 11.94 -16.75 -0.20 -0.33 16 26 N -0.55 -5.44 6.08 -9.12 -0.06 -5.49 16 27 H 0.41 2.95 8.96 -40.82 -0.37 2.58 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 2.40 6.53 -51.93 -0.34 2.06 16 33 H 0.40 3.77 8.83 -40.82 -0.36 3.41 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 37 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 38 H 0.16 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 323.49 15.07 4.87 4.87 Total: -1.00 -34.52 323.49 -9.33 -43.85 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.22 Total: 6.24 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -3.72 Total: -5.45 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.31 Total: -56.79 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.52 -9.33 -43.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962667352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.964 kcal (2) G-P(sol) polarization free energy of solvation -34.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds