Wall clock time and date at job start Mon Mar 30 2020 02:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00046 * 2 1 4 4 H 1.48502 * 109.47232 * 270.00252 * 3 2 1 5 5 H 1.48505 * 109.47267 * 30.00281 * 3 2 1 6 6 H 1.48497 * 109.47339 * 150.00040 * 3 2 1 7 7 C 1.38813 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99418 * 170.57478 * 7 2 1 9 9 N 1.36935 * 120.00060 * 350.56917 * 7 2 1 10 10 C 1.48140 * 127.83689 * 164.36029 * 9 7 2 11 11 C 1.57742 * 104.61770 * 139.76116 * 10 9 7 12 12 H 1.09004 * 120.32670 * 244.67023 * 11 10 9 13 13 C 1.54137 * 103.42794 * 24.77697 * 11 10 9 14 14 H 1.09011 * 121.78940 * 220.64069 * 13 11 10 15 15 C 1.48146 * 127.83791 * 344.35796 * 9 7 2 16 16 C 1.52999 * 116.08343 * 87.40804 * 11 10 9 17 17 H 1.09003 * 117.44170 * 16.83180 * 16 11 10 18 18 N 1.46499 * 117.44535 * 161.57616 * 16 11 10 19 19 C 1.34770 * 120.00183 * 223.99695 * 18 16 11 20 20 O 1.21282 * 120.00095 * 0.02562 * 19 18 16 21 21 C 1.50698 * 120.00274 * 179.97438 * 19 18 16 22 22 C 1.50699 * 109.47534 * 180.02562 * 21 19 18 23 23 C 1.34853 * 125.89030 * 84.99723 * 22 21 19 24 24 C 1.40886 * 107.41541 * 179.75009 * 23 22 21 25 25 C 1.34854 * 107.41933 * 0.22813 * 24 23 22 26 26 N 1.36342 * 108.21832 * 0.02562 * 25 24 23 27 27 H 0.96993 * 125.63529 * 180.02562 * 26 25 24 28 28 H 0.97005 * 119.99445 * 359.97438 * 1 2 3 29 29 H 1.09005 * 110.41029 * 259.19695 * 10 9 7 30 30 H 1.09007 * 110.40953 * 21.50939 * 10 9 7 31 31 H 1.08998 * 110.40813 * 100.80583 * 15 9 7 32 32 H 1.09001 * 110.50948 * 338.41803 * 15 9 7 33 33 H 0.96996 * 119.99618 * 44.00369 * 18 16 11 34 34 H 1.08997 * 109.46803 * 60.00118 * 21 19 18 35 35 H 1.08998 * 109.47182 * 300.00417 * 21 19 18 36 36 H 1.07996 * 126.28742 * 0.02562 * 23 22 21 37 37 H 1.08006 * 126.29129 * 180.20735 * 24 23 22 38 38 H 1.08001 * 125.88714 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0793 -1.2084 -0.1537 9 7 1.3394 -2.3801 0.1933 10 6 1.8185 -3.7546 -0.0819 11 6 1.2951 -4.6099 1.1359 12 1 1.9999 -5.0720 1.8272 13 6 0.0731 -3.8133 1.6338 14 1 -0.1327 -3.6819 2.6962 15 6 -0.0302 -2.5690 0.7256 16 6 -0.1133 -5.1906 0.9942 17 1 -0.5438 -5.2256 -0.0066 18 7 -0.4776 -6.3014 1.8771 19 6 -1.1345 -7.3687 1.3814 20 8 -1.4237 -7.4098 0.2043 21 6 -1.5088 -8.5116 2.2895 22 6 -2.2289 -9.5700 1.4944 23 6 -1.6472 -10.5559 0.7815 24 6 -2.6780 -11.3219 0.2021 25 6 -3.8502 -10.7718 0.5787 26 7 -3.5809 -9.6940 1.3690 27 1 -4.2420 -9.1141 1.7783 28 1 -0.4849 0.8401 0.0004 29 1 1.4047 -4.1205 -1.0216 30 1 2.9079 -3.7785 -0.1123 31 1 -0.7327 -2.7497 -0.0880 32 1 -0.3376 -1.6992 1.3062 33 1 -0.2461 -6.2687 2.8185 34 1 -2.1606 -8.1466 3.0832 35 1 -0.6064 -8.9380 2.7277 36 1 -0.5863 -10.7293 0.6780 37 1 -2.5524 -12.1898 -0.4283 38 1 -4.8328 -11.1239 0.3013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962667352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:03 Heat of formation + Delta-G solvation = 49.034961 kcal Electronic energy + Delta-G solvation = -20245.953867 eV Core-core repulsion = 17090.066070 eV Total energy + Delta-G solvation = -3155.887797 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.02978 -40.90303 -39.59889 -36.06836 -34.35616 -32.93603 -31.85004 -31.76461 -28.81203 -27.96016 -27.09073 -23.67347 -22.02808 -21.83395 -21.40215 -20.93787 -20.88133 -18.88190 -18.51680 -18.02693 -17.37366 -16.71854 -16.21437 -15.64922 -15.35371 -14.92435 -14.65491 -14.55947 -14.45490 -14.19970 -13.76292 -13.50754 -13.33617 -13.14780 -13.08505 -12.86138 -12.72571 -12.48080 -12.11026 -12.00520 -11.87899 -11.67683 -11.03329 -10.84867 -10.70838 -9.69233 -9.67740 -8.94580 -8.89594 -7.93424 -5.30323 1.28696 1.46683 1.48282 1.57885 1.58770 1.99673 2.27694 2.48052 2.57533 2.87699 3.27750 3.59755 3.73897 3.83560 3.96196 4.05079 4.07754 4.27580 4.31981 4.48641 4.51661 4.58647 4.68858 4.83064 4.89248 4.92280 4.97029 5.27282 5.38017 5.40778 5.44507 5.44999 5.55888 5.63038 6.11799 6.14815 6.25856 6.57541 6.84372 6.98628 7.29465 7.65552 8.44237 9.20677 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.052961 B = 0.002936 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.560605 B = 9534.458057 C = 9647.855879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.983 3.017 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.243 4.243 8 H 0.083 0.917 9 N -0.617 5.617 10 C 0.147 3.853 11 C -0.165 4.165 12 H 0.143 0.857 13 C -0.179 4.179 14 H 0.128 0.872 15 C 0.189 3.811 16 C 0.114 3.886 17 H 0.098 0.902 18 N -0.683 5.683 19 C 0.511 3.489 20 O -0.580 6.580 21 C -0.059 4.059 22 C 0.018 3.982 23 C -0.210 4.210 24 C -0.230 4.230 25 C -0.012 4.012 26 N -0.550 5.550 27 H 0.423 0.577 28 H 0.250 0.750 29 H 0.018 0.982 30 H 0.062 0.938 31 H -0.008 1.008 32 H 0.059 0.941 33 H 0.420 0.580 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 -20.354 10.014 23.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.811 3.189 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.191 1.191 7 C -0.371 4.371 8 H 0.101 0.899 9 N -0.341 5.341 10 C 0.021 3.979 11 C -0.186 4.186 12 H 0.161 0.839 13 C -0.200 4.200 14 H 0.146 0.854 15 C 0.063 3.937 16 C 0.006 3.994 17 H 0.116 0.884 18 N -0.334 5.334 19 C 0.299 3.701 20 O -0.459 6.459 21 C -0.099 4.099 22 C -0.096 4.096 23 C -0.235 4.235 24 C -0.255 4.255 25 C -0.144 4.144 26 N -0.146 5.146 27 H 0.262 0.738 28 H 0.059 0.941 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.010 0.990 32 H 0.077 0.923 33 H 0.258 0.742 34 H 0.152 0.848 35 H 0.163 0.837 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.267 -20.040 9.228 22.683 hybrid contribution 0.033 1.410 -0.019 1.411 sum -5.233 -18.630 9.209 21.431 Atomic orbital electron populations 1.70110 1.06630 1.25835 1.57037 1.25790 0.96514 1.01443 1.01947 0.85024 0.77777 0.78606 0.77536 1.21264 1.21794 1.19078 1.19402 0.91486 0.83479 1.42741 0.89923 1.45423 1.14159 1.01109 1.73386 1.21848 0.97961 0.84403 0.93683 1.24984 0.90937 1.01395 1.01285 0.83912 1.24285 1.04079 0.90966 1.00648 0.85377 1.20792 0.86004 0.93907 0.93039 1.21361 0.97565 0.85511 0.94948 0.88388 1.45185 1.58040 1.17341 1.12788 1.21335 0.76453 0.83449 0.88858 1.90745 1.55242 1.80327 1.19551 1.20193 1.03532 0.89910 0.96232 1.19823 0.83561 1.00116 1.06056 1.20901 0.99435 0.99251 1.03878 1.21173 0.92662 1.04159 1.07459 1.22282 1.00707 0.91649 0.99718 1.41975 1.06614 1.25337 1.40698 0.73848 0.94066 0.96437 0.91957 0.98996 0.92266 0.74168 0.84806 0.83721 0.85114 0.84059 0.79157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.45 10.88 21.65 0.24 -57.22 16 2 C -0.06 -3.61 5.40 84.86 0.46 -3.15 16 3 Si 0.98 45.43 29.56 68.60 2.03 47.46 16 4 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.24 -13.70 10.35 84.03 0.87 -12.83 16 8 H 0.08 4.44 7.85 -2.91 -0.02 4.41 16 9 N -0.62 -32.36 3.38 -681.31 -2.30 -34.67 16 10 C 0.15 6.26 7.10 87.74 0.62 6.88 16 11 C -0.16 -5.49 7.33 -8.73 -0.06 -5.55 16 12 H 0.14 3.80 8.14 -2.38 -0.02 3.78 16 13 C -0.18 -6.46 6.97 -9.94 -0.07 -6.53 16 14 H 0.13 3.95 8.14 -2.38 -0.02 3.93 16 15 C 0.19 9.39 5.69 86.53 0.49 9.89 16 16 C 0.11 3.67 5.93 44.99 0.27 3.94 16 17 H 0.10 3.92 7.40 -2.39 -0.02 3.90 16 18 N -0.68 -15.35 5.56 -442.54 -2.46 -17.81 16 19 C 0.51 12.58 7.82 87.66 0.69 13.26 16 20 O -0.58 -21.08 15.60 -3.04 -0.05 -21.13 16 21 C -0.06 -0.85 6.24 29.10 0.18 -0.67 16 22 C 0.02 0.37 5.66 41.08 0.23 0.60 16 23 C -0.21 -4.94 10.77 22.14 0.24 -4.71 16 24 C -0.23 -5.00 10.86 22.14 0.24 -4.76 16 25 C -0.01 -0.21 11.94 83.21 0.99 0.78 16 26 N -0.55 -9.69 6.08 -182.76 -1.11 -10.80 16 27 H 0.42 5.03 8.96 -92.71 -0.83 4.20 16 28 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 29 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 31 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 32 H 0.06 3.29 6.53 -2.39 -0.02 3.27 16 33 H 0.42 5.95 8.83 -92.71 -0.82 5.13 16 34 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 37 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 38 H 0.19 2.08 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -78.83 323.49 0.93 -77.91 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -0.56 Total: 19.10 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 5.15 Total: -2.85 kcal Atomic # 7 Polarization: -114.85 SS G_CDS: -5.64 Total: -120.49 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.05 Total: -21.13 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -78.83 0.93 -77.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962667352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.940 kcal (2) G-P(sol) polarization free energy of solvation -78.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds