Wall clock time and date at job start Mon Mar 30 2020 01:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00051 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00067 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99897 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00368 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99845 * 179.72546 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.64000 * 36.68447 * 10 9 7 12 12 C 1.55160 * 110.71990 * 273.54634 * 10 9 7 13 13 C 1.54904 * 101.58416 * 206.13427 * 12 10 9 14 14 N 1.47434 * 104.83221 * 37.00719 * 13 12 10 15 15 C 1.34774 * 125.64804 * 155.91720 * 14 13 12 16 16 O 1.21277 * 119.99910 * 179.97438 * 15 14 13 17 17 C 1.50697 * 119.99872 * 359.97438 * 15 14 13 18 18 C 1.50707 * 109.46941 * 179.97438 * 17 15 14 19 19 C 1.38677 * 120.41671 * 90.00059 * 18 17 15 20 20 C 1.38628 * 118.41639 * 180.02562 * 19 18 17 21 21 C 1.38222 * 119.16444 * 359.97438 * 20 19 18 22 22 N 1.31852 * 120.76470 * 359.97438 * 21 20 19 23 23 C 1.31891 * 121.72708 * 359.70972 * 22 21 20 24 24 C 1.47023 * 108.70268 * 335.87220 * 14 13 12 25 25 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 27 27 H 1.09008 * 110.99918 * 324.20876 * 12 10 9 28 28 H 1.08994 * 111.00219 * 88.01702 * 12 10 9 29 29 H 1.08995 * 110.37093 * 155.84550 * 13 12 10 30 30 H 1.09000 * 110.36548 * 278.05866 * 13 12 10 31 31 H 1.08999 * 109.47537 * 299.99471 * 17 15 14 32 32 H 1.09002 * 109.47602 * 60.00226 * 17 15 14 33 33 H 1.07999 * 120.78874 * 359.97438 * 19 18 17 34 34 H 1.07999 * 120.41313 * 179.97438 * 20 19 18 35 35 H 1.08000 * 119.61863 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.62034 * 180.30824 * 23 22 21 37 37 H 1.08998 * 109.88202 * 241.64198 * 24 14 13 38 38 H 1.09004 * 109.88287 * 120.47603 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 -0.0051 10 6 4.1121 -2.4708 -0.0051 11 1 3.5933 -3.2141 -0.6106 12 6 4.3149 -2.9877 1.4437 13 6 5.5944 -3.8473 1.2911 14 7 6.4296 -3.1126 0.3235 15 6 7.7700 -3.2023 0.2156 16 8 8.3560 -2.5487 -0.6212 17 6 8.5405 -4.1147 1.1346 18 6 10.0096 -4.0318 0.8088 19 6 10.8175 -3.0989 1.4414 20 6 12.1630 -3.0586 1.1097 21 6 12.6511 -3.9435 0.1668 22 7 11.8535 -4.8182 -0.4139 23 6 10.5700 -4.8893 -0.1187 24 6 5.5579 -2.2666 -0.5048 25 1 -0.4850 0.8400 0.0004 26 1 3.8646 -0.3621 -0.0099 27 1 4.4800 -2.1603 2.1341 28 1 3.4696 -3.5973 1.7629 29 1 6.1095 -3.9341 2.2478 30 1 5.3438 -4.8354 0.9051 31 1 8.3796 -3.8094 2.1685 32 1 8.1964 -5.1403 1.0009 33 1 10.4081 -2.4195 2.1742 34 1 12.8213 -2.3447 1.5822 35 1 13.6982 -3.9188 -0.0968 36 1 9.9487 -5.6224 -0.6116 37 1 5.6348 -2.5665 -1.5499 38 1 5.8437 -1.2204 -0.3951 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968412153.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:44 Heat of formation + Delta-G solvation = 20.023975 kcal Electronic energy + Delta-G solvation = -20403.009995 eV Core-core repulsion = 17245.864188 eV Total energy + Delta-G solvation = -3157.145807 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.62159 -39.64201 -37.47906 -34.33226 -33.75465 -32.15005 -31.66045 -29.94537 -28.93583 -27.37421 -23.87027 -23.77429 -22.77402 -22.29385 -20.24336 -19.24416 -17.81658 -17.29603 -17.10455 -16.73772 -16.11574 -15.59671 -14.95541 -14.68985 -14.11627 -14.05530 -13.70008 -13.55121 -13.30089 -13.26076 -12.83636 -12.56727 -12.42496 -11.99870 -11.94660 -11.77651 -11.49586 -10.95082 -10.76163 -10.57272 -10.15324 -10.10406 -9.84828 -9.68634 -9.65833 -9.16033 -9.04075 -8.56906 -7.40204 -5.86608 -3.24366 0.87891 1.08894 2.61272 2.98480 3.32525 3.36041 3.41038 3.64325 4.18830 4.43371 4.51082 4.54587 4.55660 4.75075 4.77543 4.86966 5.06183 5.10996 5.13622 5.19512 5.39162 5.41191 5.47453 5.54142 5.60021 5.78103 5.82345 5.87862 6.01360 6.06733 6.20640 6.37230 6.46496 6.48186 6.72820 7.55744 7.76695 7.87095 8.16122 8.31787 9.08291 9.80902 9.98787 11.31052 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.036780 B = 0.003371 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.103095 B = 8305.104947 C = 8674.329592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.093 0.907 9 N -0.740 5.740 10 C 0.176 3.824 11 H 0.074 0.926 12 C -0.154 4.154 13 C 0.096 3.904 14 N -0.613 5.613 15 C 0.526 3.474 16 O -0.539 6.539 17 C -0.094 4.094 18 C -0.114 4.114 19 C -0.062 4.062 20 C -0.172 4.172 21 C 0.094 3.906 22 N -0.485 5.485 23 C 0.113 3.887 24 C 0.099 3.901 25 H 0.261 0.739 26 H 0.363 0.637 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.069 0.931 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.805 -10.256 5.750 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.187 4.187 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.110 0.890 9 N -0.382 5.382 10 C 0.065 3.935 11 H 0.091 0.909 12 C -0.195 4.195 13 C -0.027 4.027 14 N -0.348 5.348 15 C 0.314 3.686 16 O -0.416 6.416 17 C -0.134 4.134 18 C -0.117 4.117 19 C -0.088 4.088 20 C -0.192 4.192 21 C -0.063 4.063 22 N -0.193 5.193 23 C -0.044 4.044 24 C -0.024 4.024 25 H 0.071 0.929 26 H 0.197 0.803 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.171 0.829 36 H 0.170 0.830 37 H 0.087 0.913 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 21.274 -10.525 4.643 24.185 hybrid contribution 0.074 1.910 0.753 2.055 sum 21.348 -8.614 5.396 23.644 Atomic orbital electron populations 1.69692 1.05114 1.26038 1.56819 1.24669 0.95223 0.97265 1.01560 0.86584 0.79202 0.84947 0.77978 1.20885 1.21590 1.20326 1.19023 0.80162 0.94854 1.43914 0.88953 1.42717 1.04195 1.01472 1.89858 1.21164 0.88834 0.89987 0.93476 0.90860 1.23526 0.95274 0.99497 1.01199 1.22452 0.92379 0.95903 0.91949 1.48495 1.05351 1.44493 1.36443 1.20079 0.80683 0.83112 0.84745 1.90733 1.68142 1.45760 1.36965 1.20576 0.90938 1.01335 1.00590 1.20331 0.95154 0.97645 0.98525 1.21458 0.93526 0.95905 0.97908 1.22107 0.96202 1.00869 0.99976 1.22749 0.99743 0.91154 0.92677 1.67682 1.05127 1.21829 1.24672 1.22601 0.91308 0.97069 0.93439 1.22292 0.90515 0.94971 0.94656 0.92886 0.80343 0.90708 0.89973 0.91117 0.91210 0.87736 0.87549 0.84984 0.84781 0.82862 0.82989 0.91287 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.97 55.49 0.78 -27.60 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 21.61 27.73 -169.99 -4.71 16.90 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.42 6.53 56.52 0.37 -6.05 16 7 C -0.25 -6.70 10.46 -15.06 -0.16 -6.86 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 9 N -0.74 -16.58 5.05 -51.65 -0.26 -16.84 16 10 C 0.18 3.10 3.59 -66.10 -0.24 2.86 16 11 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 12 C -0.15 -2.24 6.77 -24.58 -0.17 -2.41 16 13 C 0.10 1.06 6.69 -2.53 -0.02 1.04 16 14 N -0.61 -8.38 3.33 -170.52 -0.57 -8.95 16 15 C 0.53 7.25 7.84 -10.99 -0.09 7.16 16 16 O -0.54 -9.71 16.36 5.56 0.09 -9.62 16 17 C -0.09 -0.87 4.86 -29.03 -0.14 -1.01 16 18 C -0.11 -1.22 4.39 -104.48 -0.46 -1.68 16 19 C -0.06 -0.61 9.86 -39.28 -0.39 -1.00 16 20 C -0.17 -1.55 10.11 -39.44 -0.40 -1.95 16 21 C 0.09 0.93 11.18 -17.55 -0.20 0.73 16 22 N -0.48 -5.86 10.36 -13.25 -0.14 -6.00 16 23 C 0.11 1.27 10.86 -17.55 -0.19 1.08 16 24 C 0.10 1.60 6.62 -3.06 -0.02 1.58 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.36 8.17 5.37 -40.82 -0.22 7.95 16 27 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 0.60 7.48 -51.93 -0.39 0.21 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.75 7.80 -51.93 -0.41 0.34 16 32 H 0.11 0.73 8.09 -51.93 -0.42 0.31 16 33 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.18 7.69 -51.93 -0.40 0.78 16 LS Contribution 322.00 15.07 4.85 4.85 Total: -1.00 -34.05 322.00 -7.74 -41.80 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.23 Total: 5.73 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -2.55 Total: -0.27 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.19 Total: -59.39 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.05 -7.74 -41.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968412153.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.819 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds