Wall clock time and date at job start Mon Mar 30 2020 01:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00051 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00067 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99897 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00368 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99845 * 179.72546 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.64000 * 36.68447 * 10 9 7 12 12 C 1.55160 * 110.71990 * 273.54634 * 10 9 7 13 13 C 1.54904 * 101.58416 * 206.13427 * 12 10 9 14 14 N 1.47434 * 104.83221 * 37.00719 * 13 12 10 15 15 C 1.34774 * 125.64804 * 155.91720 * 14 13 12 16 16 O 1.21277 * 119.99910 * 179.97438 * 15 14 13 17 17 C 1.50697 * 119.99872 * 359.97438 * 15 14 13 18 18 C 1.50707 * 109.46941 * 179.97438 * 17 15 14 19 19 C 1.38677 * 120.41671 * 90.00059 * 18 17 15 20 20 C 1.38628 * 118.41639 * 180.02562 * 19 18 17 21 21 C 1.38222 * 119.16444 * 359.97438 * 20 19 18 22 22 N 1.31852 * 120.76470 * 359.97438 * 21 20 19 23 23 C 1.31891 * 121.72708 * 359.70972 * 22 21 20 24 24 C 1.47023 * 108.70268 * 335.87220 * 14 13 12 25 25 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 27 27 H 1.09008 * 110.99918 * 324.20876 * 12 10 9 28 28 H 1.08994 * 111.00219 * 88.01702 * 12 10 9 29 29 H 1.08995 * 110.37093 * 155.84550 * 13 12 10 30 30 H 1.09000 * 110.36548 * 278.05866 * 13 12 10 31 31 H 1.08999 * 109.47537 * 299.99471 * 17 15 14 32 32 H 1.09002 * 109.47602 * 60.00226 * 17 15 14 33 33 H 1.07999 * 120.78874 * 359.97438 * 19 18 17 34 34 H 1.07999 * 120.41313 * 179.97438 * 20 19 18 35 35 H 1.08000 * 119.61863 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.62034 * 180.30824 * 23 22 21 37 37 H 1.08998 * 109.88202 * 241.64198 * 24 14 13 38 38 H 1.09004 * 109.88287 * 120.47603 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 -0.0051 10 6 4.1121 -2.4708 -0.0051 11 1 3.5933 -3.2141 -0.6106 12 6 4.3149 -2.9877 1.4437 13 6 5.5944 -3.8473 1.2911 14 7 6.4296 -3.1126 0.3235 15 6 7.7700 -3.2023 0.2156 16 8 8.3560 -2.5487 -0.6212 17 6 8.5405 -4.1147 1.1346 18 6 10.0096 -4.0318 0.8088 19 6 10.8175 -3.0989 1.4414 20 6 12.1630 -3.0586 1.1097 21 6 12.6511 -3.9435 0.1668 22 7 11.8535 -4.8182 -0.4139 23 6 10.5700 -4.8893 -0.1187 24 6 5.5579 -2.2666 -0.5048 25 1 -0.4850 0.8400 0.0004 26 1 3.8646 -0.3621 -0.0099 27 1 4.4800 -2.1603 2.1341 28 1 3.4696 -3.5973 1.7629 29 1 6.1095 -3.9341 2.2478 30 1 5.3438 -4.8354 0.9051 31 1 8.3796 -3.8094 2.1685 32 1 8.1964 -5.1403 1.0009 33 1 10.4081 -2.4195 2.1742 34 1 12.8213 -2.3447 1.5822 35 1 13.6982 -3.9188 -0.0968 36 1 9.9487 -5.6224 -0.6116 37 1 5.6348 -2.5665 -1.5499 38 1 5.8437 -1.2204 -0.3951 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968412153.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:43 Heat of formation + Delta-G solvation = -3.640099 kcal Electronic energy + Delta-G solvation = -20404.036147 eV Core-core repulsion = 17245.864188 eV Total energy + Delta-G solvation = -3158.171959 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.48558 -40.62502 -38.73549 -36.02477 -34.57186 -33.54123 -32.81978 -31.33563 -30.03356 -28.46348 -25.40635 -24.50605 -24.18549 -23.12863 -21.69558 -20.28959 -19.73042 -18.17127 -18.00227 -17.62419 -17.24427 -16.60693 -16.31846 -15.83137 -15.69240 -15.29255 -14.76739 -14.61001 -14.43741 -14.23760 -13.95121 -13.81797 -13.48046 -13.42389 -13.13550 -13.02819 -12.75567 -12.46634 -12.22579 -12.14097 -11.82584 -11.70028 -11.10519 -10.99699 -10.68781 -10.40851 -9.90672 -9.69819 -9.34566 -8.03905 -5.38197 0.15164 0.36579 1.37197 1.39353 1.45764 1.59703 1.95117 2.46357 2.88477 3.26444 3.49481 3.53325 3.57363 3.74252 3.85412 3.92870 4.05178 4.09030 4.12487 4.24374 4.38914 4.47881 4.49233 4.55004 4.68019 4.76766 4.84949 4.89545 4.99253 5.16943 5.19212 5.27757 5.31577 5.42829 5.75963 5.79464 6.19910 6.53032 7.03280 7.04136 7.11929 7.79497 7.96688 9.17008 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.036780 B = 0.003371 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.103095 B = 8305.104947 C = 8674.329592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.059 4.059 3 Si 0.947 3.053 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.256 1.256 7 C -0.227 4.227 8 H 0.067 0.933 9 N -0.747 5.747 10 C 0.166 3.834 11 H 0.070 0.930 12 C -0.147 4.147 13 C 0.105 3.895 14 N -0.613 5.613 15 C 0.524 3.476 16 O -0.589 6.589 17 C -0.082 4.082 18 C -0.126 4.126 19 C -0.075 4.075 20 C -0.172 4.172 21 C 0.080 3.920 22 N -0.516 5.516 23 C 0.093 3.907 24 C 0.107 3.893 25 H 0.258 0.742 26 H 0.363 0.637 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.149 0.851 34 H 0.162 0.838 35 H 0.176 0.824 36 H 0.162 0.838 37 H 0.063 0.937 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.068 -10.998 7.370 26.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.251 4.251 3 Si 0.775 3.225 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.181 1.181 7 C -0.357 4.357 8 H 0.085 0.915 9 N -0.390 5.390 10 C 0.057 3.943 11 H 0.088 0.912 12 C -0.188 4.188 13 C -0.017 4.017 14 N -0.347 5.347 15 C 0.314 3.686 16 O -0.469 6.469 17 C -0.122 4.122 18 C -0.128 4.128 19 C -0.101 4.101 20 C -0.191 4.191 21 C -0.076 4.076 22 N -0.224 5.224 23 C -0.063 4.063 24 C -0.017 4.017 25 H 0.067 0.933 26 H 0.197 0.803 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.128 0.872 30 H 0.113 0.887 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.179 0.821 35 H 0.193 0.807 36 H 0.179 0.821 37 H 0.081 0.919 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 23.587 -11.326 6.292 26.912 hybrid contribution -0.579 2.044 0.218 2.135 sum 23.009 -9.282 6.510 25.651 Atomic orbital electron populations 1.69854 1.06941 1.26623 1.59630 1.25403 0.95984 1.00886 1.02798 0.85528 0.78612 0.80415 0.77895 1.20917 1.22185 1.18073 1.19002 0.82057 0.93664 1.41013 0.91507 1.42729 1.02751 1.03397 1.90120 1.21375 0.89091 0.87933 0.95856 0.91249 1.23352 0.97628 0.99798 0.98029 1.22603 0.90250 0.95541 0.93318 1.48568 1.05546 1.44187 1.36389 1.20911 0.80336 0.82802 0.84531 1.90716 1.69015 1.47931 1.39246 1.20631 0.89202 1.01727 1.00632 1.20517 0.96034 0.97735 0.98549 1.21829 0.94034 0.95953 0.98250 1.22450 0.96485 1.00810 0.99404 1.23228 1.00730 0.90933 0.92743 1.67671 1.05869 1.23112 1.25793 1.22871 0.91462 0.97930 0.94057 1.21968 0.90083 0.94728 0.94943 0.93318 0.80323 0.91794 0.89653 0.87181 0.88652 0.84752 0.84535 0.83309 0.82063 0.80663 0.82126 0.91899 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.37 13.97 21.65 0.30 -61.06 16 2 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 3 Si 0.95 44.98 27.73 68.60 1.90 46.89 16 4 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.26 -11.08 6.53 99.48 0.65 -10.43 16 7 C -0.23 -12.27 10.46 84.03 0.88 -11.40 16 8 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 9 N -0.75 -33.11 5.05 -317.33 -1.60 -34.71 16 10 C 0.17 5.68 3.59 46.18 0.17 5.84 16 11 H 0.07 2.42 8.12 -2.39 -0.02 2.40 16 12 C -0.15 -3.93 6.77 31.99 0.22 -3.71 16 13 C 0.10 1.84 6.69 86.85 0.58 2.42 16 14 N -0.61 -15.02 3.33 -811.79 -2.70 -17.72 16 15 C 0.52 13.05 7.84 87.66 0.69 13.74 16 16 O -0.59 -20.60 16.36 -3.02 -0.05 -20.65 16 17 C -0.08 -1.19 4.86 29.10 0.14 -1.05 16 18 C -0.13 -2.38 4.39 -19.77 -0.09 -2.46 16 19 C -0.07 -1.29 9.86 22.47 0.22 -1.07 16 20 C -0.17 -2.71 10.11 22.36 0.23 -2.48 16 21 C 0.08 1.47 11.18 84.69 0.95 2.41 16 22 N -0.52 -12.00 10.36 -195.84 -2.03 -14.03 16 23 C 0.09 1.98 10.86 84.67 0.92 2.90 16 24 C 0.11 3.35 6.62 86.73 0.57 3.93 16 25 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 26 H 0.36 15.98 5.37 -92.71 -0.50 15.48 16 27 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.11 1.19 7.48 -2.39 -0.02 1.17 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.13 1.18 7.80 -2.39 -0.02 1.17 16 32 H 0.14 1.18 8.09 -2.39 -0.02 1.16 16 33 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 34 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.18 2.15 8.06 -2.91 -0.02 2.12 16 36 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.05 1.74 7.69 -2.38 -0.02 1.72 16 Total: -1.00 -76.55 322.00 2.27 -74.29 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.51 Total: 20.85 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 5.94 Total: 6.16 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -6.03 Total: -127.52 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.05 Total: -20.65 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.90 Total: 46.89 kcal Total: -76.55 2.27 -74.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968412153.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.646 kcal (2) G-P(sol) polarization free energy of solvation -76.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds