Wall clock time and date at job start Mon Mar 30 2020 02:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00230 * 2 1 4 4 H 1.48501 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47131 * 300.00504 * 3 2 1 6 6 H 1.48501 * 109.47002 * 60.00339 * 3 2 1 7 7 C 1.38817 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99809 * 170.56710 * 7 2 1 9 9 N 1.36936 * 120.00004 * 350.57291 * 7 2 1 10 10 C 1.48148 * 127.84109 * 164.33904 * 9 7 2 11 11 C 1.57686 * 104.67464 * 139.76884 * 10 9 7 12 12 H 1.08998 * 120.32236 * 244.63565 * 11 10 9 13 13 C 1.53007 * 116.11299 * 87.31140 * 11 10 9 14 14 H 1.09001 * 117.40054 * 16.94561 * 13 11 10 15 15 C 1.52996 * 117.44217 * 161.63252 * 13 11 10 16 16 N 1.46493 * 109.47316 * 244.23835 * 15 13 11 17 17 C 1.34775 * 120.00260 * 180.02562 * 16 15 13 18 18 O 1.21696 * 119.99916 * 0.02562 * 17 16 15 19 19 C 1.46683 * 120.00280 * 180.02562 * 17 16 15 20 20 C 1.37865 * 126.23283 * 180.02562 * 19 17 16 21 21 C 1.39840 * 107.08556 * 179.97438 * 20 19 17 22 22 C 1.35451 * 107.86270 * 0.22692 * 21 20 19 23 23 N 1.35537 * 108.87291 * 359.62581 * 22 21 20 24 24 H 0.96999 * 125.67684 * 180.11260 * 23 22 21 25 25 C 1.53006 * 60.55296 * 269.28398 * 13 11 10 26 26 H 1.08996 * 119.53739 * 248.23416 * 25 13 11 27 27 C 1.48149 * 127.83646 * 344.32930 * 9 7 2 28 28 H 0.96999 * 119.99356 * 359.97438 * 1 2 3 29 29 H 1.09006 * 110.40199 * 259.19199 * 10 9 7 30 30 H 1.08996 * 110.40534 * 21.50351 * 10 9 7 31 31 H 1.09006 * 109.46696 * 124.24027 * 15 13 11 32 32 H 1.08993 * 109.47547 * 4.24256 * 15 13 11 33 33 H 0.97007 * 120.00252 * 359.97438 * 16 15 13 34 34 H 1.07996 * 126.46177 * 359.97438 * 20 19 17 35 35 H 1.07998 * 126.06945 * 179.97438 * 21 20 19 36 36 H 1.08000 * 125.56615 * 179.76886 * 22 21 20 37 37 H 1.09000 * 110.40869 * 100.80904 * 27 9 7 38 38 H 1.09000 * 110.41051 * 338.37542 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0793 -1.2085 -0.1538 9 7 1.3395 -2.3802 0.1932 10 6 1.8184 -3.7548 -0.0823 11 6 1.2960 -4.6112 1.1343 12 1 2.0012 -5.0742 1.8244 13 6 -0.1131 -5.1907 0.9941 14 1 -0.5440 -5.2254 -0.0066 15 6 -0.4933 -6.3510 1.9161 16 7 -0.7428 -7.5509 1.1136 17 6 -1.0953 -8.7036 1.7164 18 8 -1.2069 -8.7475 2.9275 19 6 -1.3446 -9.9052 0.9129 20 6 -1.7104 -11.1448 1.3927 21 6 -1.8417 -11.9909 0.2870 22 6 -1.5552 -11.2705 -0.8237 23 7 -1.2565 -10.0002 -0.4575 24 1 -1.0166 -9.2792 -1.0604 25 6 0.0735 -3.8135 1.6340 26 1 -0.1318 -3.6823 2.6964 27 6 -0.0299 -2.5691 0.7260 28 1 -0.4849 0.8401 0.0004 29 1 1.4042 -4.1203 -1.0220 30 1 2.9077 -3.7786 -0.1132 31 1 -1.3940 -6.0925 2.4728 32 1 0.3221 -6.5433 2.6133 33 1 -0.6549 -7.5157 0.1481 34 1 -1.8662 -11.4122 2.4274 35 1 -2.1181 -13.0345 0.3143 36 1 -1.5655 -11.6464 -1.8361 37 1 -0.7327 -2.7495 -0.0874 38 1 -0.3351 -1.6989 1.3072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977800737.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:27 Heat of formation + Delta-G solvation = 69.002765 kcal Electronic energy + Delta-G solvation = -20118.745924 eV Core-core repulsion = 16963.723997 eV Total energy + Delta-G solvation = -3155.021928 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.46922 -39.38766 -38.50996 -35.07124 -33.42737 -31.38779 -30.89258 -29.66106 -27.29529 -26.98519 -24.99651 -22.65568 -21.23666 -20.77226 -20.42883 -20.10201 -19.34940 -18.80723 -16.85171 -16.08028 -15.90080 -15.53429 -14.81458 -14.34418 -14.31437 -14.09283 -13.75799 -13.58275 -13.07045 -12.87335 -12.76637 -12.69067 -12.53440 -11.92829 -11.29439 -11.13225 -10.87966 -10.67790 -10.34838 -10.27143 -10.13211 -9.78673 -9.50811 -9.27974 -9.21270 -9.06515 -8.68555 -8.47247 -6.91938 -5.84690 -3.19056 1.27013 2.50955 2.81865 3.01418 3.26863 3.34752 3.41029 3.43420 4.10158 4.42172 4.68031 4.77006 4.85145 5.09433 5.19484 5.25125 5.34364 5.40117 5.45281 5.72549 5.73470 5.81224 5.85631 5.88461 5.94208 6.18535 6.23663 6.44018 6.48976 6.59697 6.63453 6.65649 6.84893 7.06670 7.30106 7.37818 7.48374 7.67604 8.04688 8.15886 9.06261 9.69107 10.45807 11.29741 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.047688 B = 0.002876 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.011018 B = 9734.094550 C = 9961.964715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.156 3.844 11 C -0.172 4.172 12 H 0.108 0.892 13 C -0.155 4.155 14 H 0.101 0.899 15 C 0.155 3.845 16 N -0.724 5.724 17 C 0.586 3.414 18 O -0.532 6.532 19 C -0.054 4.054 20 C -0.109 4.109 21 C -0.214 4.214 22 C 0.021 3.979 23 N -0.540 5.540 24 H 0.417 0.583 25 C -0.161 4.161 26 H 0.103 0.897 27 C 0.183 3.817 28 H 0.254 0.746 29 H 0.026 0.974 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.395 0.605 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.171 0.829 37 H 0.023 0.977 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.137 -20.284 -1.970 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.029 3.971 11 C -0.192 4.192 12 H 0.126 0.874 13 C -0.174 4.174 14 H 0.119 0.881 15 C 0.032 3.968 16 N -0.375 5.375 17 C 0.373 3.627 18 O -0.409 6.409 19 C -0.167 4.167 20 C -0.136 4.136 21 C -0.238 4.238 22 C -0.115 4.115 23 N -0.136 5.136 24 H 0.254 0.746 25 C -0.181 4.181 26 H 0.121 0.879 27 C 0.058 3.942 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.228 0.772 34 H 0.165 0.835 35 H 0.161 0.839 36 H 0.188 0.812 37 H 0.041 0.959 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.171 -19.820 -1.174 20.106 hybrid contribution 0.525 1.117 -0.813 1.478 sum -2.647 -18.702 -1.987 18.993 Atomic orbital electron populations 1.69912 1.05080 1.25378 1.55742 1.24908 0.95658 0.98034 1.01692 0.86037 0.78886 0.83454 0.77314 1.20345 1.21667 1.21554 1.19040 0.90902 0.82347 1.43304 0.90510 1.45157 1.13722 0.99978 1.72875 1.21710 0.97135 0.85901 0.92335 1.24733 0.89698 1.02246 1.02541 0.87440 1.22550 1.00637 0.94159 1.00078 0.88059 1.20918 1.01262 0.81883 0.92718 1.45934 1.70585 1.10399 1.10588 1.17081 0.76969 0.81562 0.87089 1.90847 1.52419 1.84468 1.13127 1.20508 1.16722 0.96970 0.82502 1.21343 1.01715 0.90838 0.99671 1.20916 1.10690 1.00424 0.91766 1.22056 1.05269 0.83967 1.00223 1.42072 1.53488 1.11310 1.06740 0.74571 1.24188 1.02149 0.91534 1.00251 0.87916 1.21083 0.86889 0.92769 0.93481 0.93568 0.95667 0.93295 0.90866 0.91172 0.77158 0.83506 0.83924 0.81192 0.95868 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.51 10.88 55.49 0.60 -25.91 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.73 29.56 -169.99 -5.03 16.70 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.23 -6.28 10.35 -15.06 -0.16 -6.44 16 8 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 9 N -0.59 -14.97 3.38 -166.73 -0.56 -15.54 16 10 C 0.16 3.16 7.10 -0.57 0.00 3.16 16 11 C -0.17 -2.94 7.03 -87.38 -0.61 -3.55 16 12 H 0.11 1.70 8.12 -51.93 -0.42 1.28 16 13 C -0.16 -2.30 5.34 -90.62 -0.48 -2.78 16 14 H 0.10 1.47 8.04 -51.93 -0.42 1.05 16 15 C 0.16 2.07 5.95 -4.05 -0.02 2.05 16 16 N -0.72 -8.37 5.55 -61.62 -0.34 -8.72 16 17 C 0.59 7.84 7.79 -12.85 -0.10 7.74 16 18 O -0.53 -9.09 16.88 5.19 0.09 -9.00 16 19 C -0.05 -0.60 7.06 -81.98 -0.58 -1.18 16 20 C -0.11 -1.18 10.65 -39.12 -0.42 -1.60 16 21 C -0.21 -1.80 10.81 -39.98 -0.43 -2.23 16 22 C 0.02 0.14 11.89 -16.91 -0.20 -0.06 16 23 N -0.54 -4.15 5.99 -9.39 -0.06 -4.20 16 24 H 0.42 2.07 8.19 -40.82 -0.33 1.74 16 25 C -0.16 -2.97 6.77 -89.22 -0.60 -3.57 16 26 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 27 C 0.18 4.32 5.70 -2.41 -0.01 4.30 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.98 7.94 -51.93 -0.41 0.57 16 33 H 0.39 3.50 7.53 -40.82 -0.31 3.19 16 34 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 2.38 6.53 -51.93 -0.34 2.04 16 LS Contribution 322.79 15.07 4.86 4.86 Total: -1.00 -33.13 322.79 -9.31 -42.45 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.16 Total: 3.76 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -3.72 Total: -4.41 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.36 Total: -54.36 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.13 -9.31 -42.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977800737.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.450 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds