Wall clock time and date at job start Mon Mar 30 2020 02:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00230 * 2 1 4 4 H 1.48501 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47131 * 300.00504 * 3 2 1 6 6 H 1.48501 * 109.47002 * 60.00339 * 3 2 1 7 7 C 1.38817 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99809 * 170.56710 * 7 2 1 9 9 N 1.36936 * 120.00004 * 350.57291 * 7 2 1 10 10 C 1.48148 * 127.84109 * 164.33904 * 9 7 2 11 11 C 1.57686 * 104.67464 * 139.76884 * 10 9 7 12 12 H 1.08998 * 120.32236 * 244.63565 * 11 10 9 13 13 C 1.53007 * 116.11299 * 87.31140 * 11 10 9 14 14 H 1.09001 * 117.40054 * 16.94561 * 13 11 10 15 15 C 1.52996 * 117.44217 * 161.63252 * 13 11 10 16 16 N 1.46493 * 109.47316 * 244.23835 * 15 13 11 17 17 C 1.34775 * 120.00260 * 180.02562 * 16 15 13 18 18 O 1.21696 * 119.99916 * 0.02562 * 17 16 15 19 19 C 1.46683 * 120.00280 * 180.02562 * 17 16 15 20 20 C 1.37865 * 126.23283 * 180.02562 * 19 17 16 21 21 C 1.39840 * 107.08556 * 179.97438 * 20 19 17 22 22 C 1.35451 * 107.86270 * 0.22692 * 21 20 19 23 23 N 1.35537 * 108.87291 * 359.62581 * 22 21 20 24 24 H 0.96999 * 125.67684 * 180.11260 * 23 22 21 25 25 C 1.53006 * 60.55296 * 269.28398 * 13 11 10 26 26 H 1.08996 * 119.53739 * 248.23416 * 25 13 11 27 27 C 1.48149 * 127.83646 * 344.32930 * 9 7 2 28 28 H 0.96999 * 119.99356 * 359.97438 * 1 2 3 29 29 H 1.09006 * 110.40199 * 259.19199 * 10 9 7 30 30 H 1.08996 * 110.40534 * 21.50351 * 10 9 7 31 31 H 1.09006 * 109.46696 * 124.24027 * 15 13 11 32 32 H 1.08993 * 109.47547 * 4.24256 * 15 13 11 33 33 H 0.97007 * 120.00252 * 359.97438 * 16 15 13 34 34 H 1.07996 * 126.46177 * 359.97438 * 20 19 17 35 35 H 1.07998 * 126.06945 * 179.97438 * 21 20 19 36 36 H 1.08000 * 125.56615 * 179.76886 * 22 21 20 37 37 H 1.09000 * 110.40869 * 100.80904 * 27 9 7 38 38 H 1.09000 * 110.41051 * 338.37542 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0793 -1.2085 -0.1538 9 7 1.3395 -2.3802 0.1932 10 6 1.8184 -3.7548 -0.0823 11 6 1.2960 -4.6112 1.1343 12 1 2.0012 -5.0742 1.8244 13 6 -0.1131 -5.1907 0.9941 14 1 -0.5440 -5.2254 -0.0066 15 6 -0.4933 -6.3510 1.9161 16 7 -0.7428 -7.5509 1.1136 17 6 -1.0953 -8.7036 1.7164 18 8 -1.2069 -8.7475 2.9275 19 6 -1.3446 -9.9052 0.9129 20 6 -1.7104 -11.1448 1.3927 21 6 -1.8417 -11.9909 0.2870 22 6 -1.5552 -11.2705 -0.8237 23 7 -1.2565 -10.0002 -0.4575 24 1 -1.0166 -9.2792 -1.0604 25 6 0.0735 -3.8135 1.6340 26 1 -0.1318 -3.6823 2.6964 27 6 -0.0299 -2.5691 0.7260 28 1 -0.4849 0.8401 0.0004 29 1 1.4042 -4.1203 -1.0220 30 1 2.9077 -3.7786 -0.1132 31 1 -1.3940 -6.0925 2.4728 32 1 0.3221 -6.5433 2.6133 33 1 -0.6549 -7.5157 0.1481 34 1 -1.8662 -11.4122 2.4274 35 1 -2.1181 -13.0345 0.3143 36 1 -1.5655 -11.6464 -1.8361 37 1 -0.7327 -2.7495 -0.0874 38 1 -0.3351 -1.6989 1.3072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977800737.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:27 Heat of formation + Delta-G solvation = 46.605740 kcal Electronic energy + Delta-G solvation = -20119.717132 eV Core-core repulsion = 16963.723997 eV Total energy + Delta-G solvation = -3155.993135 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.18275 -40.61625 -39.81705 -36.41711 -35.06487 -32.82160 -31.94322 -30.56600 -28.85689 -28.52906 -26.64655 -23.66578 -22.76221 -21.81591 -21.39090 -20.97241 -20.87303 -19.78587 -18.82482 -17.17274 -16.94709 -16.62469 -16.50945 -15.85254 -15.39990 -15.01392 -14.94706 -14.65969 -14.59733 -14.39318 -14.05799 -13.53412 -13.38785 -13.20446 -13.15958 -12.89569 -12.75212 -12.30804 -11.97389 -11.90129 -11.78214 -11.40982 -10.97220 -10.75261 -10.59620 -10.19984 -9.93726 -9.16805 -8.92463 -7.93919 -5.29874 0.46290 1.45306 1.46522 1.57118 1.86164 1.97427 2.26353 2.35765 2.46106 2.72705 3.24171 3.58108 3.67975 3.81941 3.89496 4.15773 4.22715 4.29597 4.36125 4.44282 4.51783 4.57006 4.63962 4.70811 4.90546 4.99531 5.10338 5.16293 5.28950 5.31361 5.37029 5.43904 5.50769 5.64937 5.75887 5.94745 6.16285 6.42371 6.61887 6.99485 7.08137 7.66738 8.44830 9.20072 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.047688 B = 0.002876 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.011018 B = 9734.094550 C = 9961.964715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.621 5.621 10 C 0.150 3.850 11 C -0.158 4.158 12 H 0.129 0.871 13 C -0.113 4.113 14 H 0.111 0.889 15 C 0.163 3.837 16 N -0.712 5.712 17 C 0.586 3.414 18 O -0.579 6.579 19 C -0.083 4.083 20 C -0.126 4.126 21 C -0.230 4.230 22 C 0.046 3.954 23 N -0.529 5.529 24 H 0.431 0.569 25 C -0.178 4.178 26 H 0.111 0.889 27 C 0.189 3.811 28 H 0.250 0.750 29 H 0.033 0.967 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.410 0.590 34 H 0.136 0.864 35 H 0.162 0.838 36 H 0.214 0.786 37 H 0.004 0.996 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.418 -22.259 -3.343 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.099 0.901 9 N -0.345 5.345 10 C 0.024 3.976 11 C -0.178 4.178 12 H 0.146 0.854 13 C -0.132 4.132 14 H 0.129 0.871 15 C 0.040 3.960 16 N -0.364 5.364 17 C 0.375 3.625 18 O -0.459 6.459 19 C -0.196 4.196 20 C -0.154 4.154 21 C -0.253 4.253 22 C -0.091 4.091 23 N -0.126 5.126 24 H 0.270 0.730 25 C -0.198 4.198 26 H 0.129 0.871 27 C 0.064 3.936 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.247 0.753 34 H 0.154 0.846 35 H 0.179 0.821 36 H 0.230 0.770 37 H 0.022 0.978 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.425 -21.810 -2.591 22.097 hybrid contribution 0.285 1.616 -0.465 1.706 sum -2.141 -20.194 -3.056 20.536 Atomic orbital electron populations 1.70100 1.06510 1.25677 1.57184 1.25740 0.96507 1.01299 1.02146 0.85007 0.78312 0.79200 0.76763 1.18886 1.21750 1.21860 1.19411 0.91400 0.83676 1.42391 0.90148 1.45466 1.14247 1.01250 1.73504 1.21878 0.97681 0.84114 0.93903 1.24665 0.90354 1.01708 1.01066 0.85356 1.22419 0.98392 0.92182 1.00214 0.87081 1.20710 1.01066 0.81864 0.92380 1.45727 1.69991 1.09398 1.11258 1.17370 0.76107 0.82303 0.86720 1.90816 1.54665 1.85260 1.15162 1.20156 1.19377 0.96101 0.83989 1.21536 1.01984 0.91687 1.00186 1.21227 1.11319 1.01408 0.91384 1.22760 1.01819 0.82955 1.01605 1.42069 1.52705 1.12249 1.05552 0.72958 1.23874 1.04801 0.91238 0.99916 0.87127 1.20808 0.86106 0.93638 0.93082 0.94127 0.94897 0.92659 0.91273 0.91243 0.75350 0.84644 0.82069 0.76984 0.97830 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.60 10.88 21.65 0.24 -56.36 16 2 C -0.06 -3.57 5.40 84.86 0.46 -3.11 16 3 Si 0.98 45.24 29.56 68.60 2.03 47.27 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 7 C -0.24 -13.35 10.35 84.03 0.87 -12.48 16 8 H 0.08 4.28 7.85 -2.91 -0.02 4.26 16 9 N -0.62 -31.54 3.38 -681.42 -2.30 -33.85 16 10 C 0.15 5.88 7.10 87.72 0.62 6.50 16 11 C -0.16 -5.07 7.03 -8.70 -0.06 -5.13 16 12 H 0.13 3.65 8.12 -2.39 -0.02 3.63 16 13 C -0.11 -3.11 5.34 -10.79 -0.06 -3.16 16 14 H 0.11 2.92 8.04 -2.39 -0.02 2.90 16 15 C 0.16 4.05 5.95 86.38 0.51 4.57 16 16 N -0.71 -15.04 5.55 -467.10 -2.59 -17.64 16 17 C 0.59 15.18 7.79 86.45 0.67 15.85 16 18 O -0.58 -19.93 16.88 -4.34 -0.07 -20.00 16 19 C -0.08 -1.74 7.06 40.35 0.28 -1.45 16 20 C -0.13 -2.65 10.65 22.57 0.24 -2.41 16 21 C -0.23 -3.29 10.81 22.01 0.24 -3.05 16 22 C 0.05 0.45 11.89 83.48 0.99 1.44 16 23 N -0.53 -6.49 5.99 -183.62 -1.10 -7.59 16 24 H 0.43 2.73 8.19 -92.71 -0.76 1.97 16 25 C -0.18 -6.46 6.77 -9.89 -0.07 -6.53 16 26 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 27 C 0.19 9.14 5.70 86.53 0.49 9.63 16 28 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.03 1.25 8.14 -2.38 -0.02 1.24 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.07 1.80 7.94 -2.39 -0.02 1.78 16 33 H 0.41 6.07 7.53 -92.70 -0.70 5.37 16 34 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 35 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 36 H 0.21 0.24 8.06 -2.91 -0.02 0.21 16 37 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.05 2.84 6.53 -2.39 -0.02 2.83 16 Total: -1.00 -74.46 322.79 1.02 -73.44 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -0.37 Total: 14.07 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 5.20 Total: 0.66 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -5.76 Total: -115.43 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.07 Total: -20.00 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -74.46 1.02 -73.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977800737.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.042 kcal (2) G-P(sol) polarization free energy of solvation -74.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds