Wall clock time and date at job start Mon Mar 30 2020 01:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86793 * 119.99892 * 2 1 4 4 H 1.48499 * 109.47161 * 85.01509 * 3 2 1 5 5 H 1.48504 * 109.47408 * 325.01870 * 3 2 1 6 6 H 1.48495 * 109.47333 * 205.01707 * 3 2 1 7 7 C 1.38810 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00351 * 195.89997 * 7 2 1 9 9 N 1.36947 * 119.99629 * 15.90380 * 7 2 1 10 10 C 1.43461 * 118.93347 * 205.50797 * 9 7 2 11 11 C 1.53249 * 108.26487 * 273.77727 * 10 9 7 12 12 C 1.47144 * 111.80976 * 281.68447 * 11 10 9 13 13 N 1.48212 * 110.34545 * 58.22588 * 12 11 10 14 14 C 1.34771 * 119.97292 * 102.46539 * 13 12 11 15 15 O 1.21546 * 120.00242 * 176.26849 * 14 13 12 16 16 C 1.47845 * 119.99880 * 356.26698 * 14 13 12 17 17 C 1.40024 * 120.56026 * 124.43757 * 16 14 13 18 18 C 1.38350 * 118.28897 * 179.97438 * 17 16 14 19 19 C 1.38359 * 119.30319 * 359.97438 * 18 17 16 20 20 N 1.31924 * 121.08021 * 0.02580 * 19 18 17 21 21 C 1.31692 * 121.87823 * 359.67403 * 20 19 18 22 22 C 1.43623 * 120.05616 * 282.47953 * 13 12 11 23 23 C 1.48856 * 118.94082 * 25.77548 * 9 7 2 24 24 H 0.96997 * 119.99673 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.76974 * 33.24620 * 10 9 7 26 26 H 1.09000 * 109.76028 * 154.01435 * 10 9 7 27 27 H 1.09000 * 109.07637 * 161.04524 * 11 10 9 28 28 H 1.08998 * 108.89844 * 42.20391 * 11 10 9 29 29 H 1.09003 * 109.32260 * 297.95375 * 12 11 10 30 30 H 1.08999 * 109.18064 * 178.40299 * 12 11 10 31 31 H 1.07995 * 120.85231 * 359.97438 * 17 16 14 32 32 H 1.07999 * 120.35093 * 180.02562 * 18 17 16 33 33 H 1.07998 * 119.45938 * 179.97438 * 19 18 17 34 34 H 1.08004 * 119.71664 * 180.29363 * 21 20 19 35 35 H 1.09006 * 108.87603 * 329.89748 * 22 13 12 36 36 H 1.08994 * 108.87397 * 211.45074 * 22 13 12 37 37 H 1.08999 * 109.47596 * 260.59848 * 23 9 7 38 38 H 1.08996 * 109.48251 * 20.63572 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 1.3948 5 1 1.5043 2.6200 -0.8027 6 1 3.5964 1.4121 -0.5920 7 6 2.0104 -1.2021 0.0005 8 1 3.0593 -1.2199 0.2568 9 7 1.3649 -2.3655 -0.3239 10 6 1.8720 -3.6064 0.1871 11 6 2.9543 -4.1142 -0.7716 12 6 2.3733 -4.7396 -1.9701 13 7 1.5026 -3.7756 -2.6837 14 6 1.9488 -3.1621 -3.7977 15 8 1.2120 -2.4235 -4.4213 16 6 3.3345 -3.3875 -4.2611 17 6 3.5850 -3.8480 -5.5595 18 6 4.8997 -4.0422 -5.9441 19 6 5.9152 -3.7773 -5.0425 20 7 5.6492 -3.3440 -3.8251 21 6 4.4151 -3.1383 -3.4143 22 6 0.1839 -3.4944 -2.1890 23 6 0.1634 -2.3024 -1.2004 24 1 -0.4849 0.8400 -0.0004 25 1 2.3058 -3.4487 1.1746 26 1 1.0648 -4.3361 0.2508 27 1 3.5737 -4.8466 -0.2538 28 1 3.5782 -3.2741 -1.0766 29 1 1.7839 -5.6076 -1.6743 30 1 3.1774 -5.0587 -2.6331 31 1 2.7728 -4.0464 -6.2430 32 1 5.1310 -4.3961 -6.9379 33 1 6.9423 -3.9284 -5.3399 34 1 4.2376 -2.7785 -2.4115 35 1 -0.1986 -4.3800 -1.6815 36 1 -0.4674 -3.2645 -3.0321 37 1 -0.7366 -2.3539 -0.5876 38 1 0.1698 -1.3666 -1.7592 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980627779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:17 Heat of formation + Delta-G solvation = 42.605168 kcal Electronic energy + Delta-G solvation = -22232.478606 eV Core-core repulsion = 19076.311993 eV Total energy + Delta-G solvation = -3156.166613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.62861 -39.03936 -37.01458 -34.39559 -32.59924 -32.42164 -31.64782 -30.60425 -27.74062 -25.49281 -24.62741 -23.55974 -23.37063 -21.92143 -19.82124 -18.98591 -17.46453 -16.97994 -16.53468 -16.37174 -15.72301 -15.20274 -14.57691 -14.15745 -13.82934 -13.76158 -13.59416 -13.29136 -13.17395 -13.08257 -12.56391 -12.29330 -12.09027 -11.63141 -11.28526 -10.94332 -10.73447 -10.58388 -10.34242 -10.18643 -10.02238 -9.89188 -9.79087 -9.64609 -9.27492 -9.01812 -8.44188 -8.10471 -6.68228 -5.76601 -3.19246 0.86818 1.21102 3.00830 3.39717 3.41555 3.48300 3.50379 3.79322 4.39211 4.53383 4.66240 4.78051 4.88354 5.03778 5.13636 5.37875 5.41842 5.47884 5.58194 5.67841 5.76263 5.84081 5.98275 6.05625 6.15678 6.16676 6.37113 6.39891 6.41144 6.58260 6.77077 6.94510 6.97094 7.41210 7.60678 7.78785 7.85097 7.90961 8.46987 8.56159 9.22882 9.91276 10.36501 11.31621 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.006975 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.360156 B = 4013.583179 C = 4442.267824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.008 3.992 3 Si 0.897 3.103 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.260 4.260 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.163 3.837 11 C -0.179 4.179 12 C 0.121 3.879 13 N -0.575 5.575 14 C 0.563 3.437 15 O -0.536 6.536 16 C -0.166 4.166 17 C -0.037 4.037 18 C -0.181 4.181 19 C 0.105 3.895 20 N -0.484 5.484 21 C 0.133 3.867 22 C 0.088 3.912 23 C 0.167 3.833 24 H 0.253 0.747 25 H 0.047 0.953 26 H 0.034 0.966 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.157 0.843 34 H 0.173 0.827 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.042 0.958 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.990 -12.423 -8.179 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.727 3.273 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.390 4.390 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.034 3.966 11 C -0.220 4.220 12 C -0.001 4.001 13 N -0.306 5.306 14 C 0.349 3.651 15 O -0.413 6.413 16 C -0.171 4.171 17 C -0.064 4.064 18 C -0.200 4.200 19 C -0.052 4.052 20 N -0.193 5.193 21 C -0.024 4.024 22 C -0.037 4.037 23 C 0.042 3.958 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.174 0.826 34 H 0.190 0.810 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.118 -11.744 -7.910 15.848 hybrid contribution -0.175 0.804 -0.568 1.000 sum 6.943 -10.939 -8.479 15.484 Atomic orbital electron populations 1.70017 1.05234 1.25478 1.53980 1.24978 0.95234 0.98297 1.00558 0.86367 0.79377 0.84102 0.77479 1.21481 1.21572 1.20439 1.19115 0.92420 0.85067 1.42359 0.91775 1.43676 1.31615 1.01773 1.54119 1.20138 0.93475 0.88586 0.94385 1.22042 1.01434 1.00701 0.97847 1.20782 0.93756 0.91140 0.94427 1.47321 1.16323 1.42216 1.24697 1.18003 0.85995 0.80255 0.80849 1.90775 1.56832 1.37003 1.56705 1.21080 0.95697 1.04112 0.96205 1.21589 0.97434 0.93348 0.94001 1.22051 0.93229 1.03230 1.01533 1.22940 0.99822 0.93340 0.89050 1.67780 1.22463 1.12177 1.16838 1.23517 0.86483 0.92502 0.99919 1.22062 0.82513 1.00267 0.98808 1.21856 0.89069 0.95134 0.89790 0.93650 0.93453 0.94760 0.92099 0.91061 0.91254 0.91497 0.84429 0.84428 0.82623 0.81008 0.92274 0.90867 0.94008 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 11.04 55.49 0.61 -25.71 16 2 C 0.01 0.23 4.91 -17.43 -0.09 0.14 16 3 Si 0.90 22.33 29.58 -169.99 -5.03 17.30 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.26 -6.99 9.26 -15.06 -0.14 -7.13 16 8 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -14.06 2.55 -172.34 -0.44 -14.50 16 10 C 0.16 3.14 5.59 -5.52 -0.03 3.10 16 11 C -0.18 -2.86 5.47 -29.41 -0.16 -3.02 16 12 C 0.12 1.76 5.06 -5.91 -0.03 1.73 16 13 N -0.57 -10.26 2.46 -177.77 -0.44 -10.69 16 14 C 0.56 10.81 7.16 -12.33 -0.09 10.73 16 15 O -0.54 -12.23 16.61 5.32 0.09 -12.14 16 16 C -0.17 -2.68 4.47 -104.82 -0.47 -3.15 16 17 C -0.04 -0.49 9.93 -38.87 -0.39 -0.87 16 18 C -0.18 -1.90 10.10 -39.50 -0.40 -2.30 16 19 C 0.11 1.21 11.17 -17.47 -0.20 1.01 16 20 N -0.48 -7.19 10.35 -12.91 -0.13 -7.32 16 21 C 0.13 2.15 9.08 -17.13 -0.16 2.00 16 22 C 0.09 1.67 5.28 -4.58 -0.02 1.65 16 23 C 0.17 3.95 5.19 -1.75 -0.01 3.94 16 24 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.05 0.93 8.02 -51.93 -0.42 0.52 16 26 H 0.03 0.61 7.58 -51.93 -0.39 0.22 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.29 4.94 -51.93 -0.26 1.03 16 29 H 0.07 0.87 8.06 -51.93 -0.42 0.46 16 30 H 0.07 0.89 5.89 -51.93 -0.31 0.59 16 31 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 32 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.17 3.03 5.03 -52.48 -0.26 2.76 16 35 H 0.06 0.97 7.73 -51.93 -0.40 0.57 16 36 H 0.07 1.42 7.32 -51.93 -0.38 1.04 16 37 H 0.04 1.04 7.99 -51.93 -0.41 0.63 16 38 H 0.08 2.12 6.61 -51.93 -0.34 1.78 16 LS Contribution 304.23 15.07 4.58 4.58 Total: -1.00 -32.28 304.23 -7.76 -40.04 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.83 Total: 0.61 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -2.17 Total: 7.83 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.40 Total: -58.22 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.28 -7.76 -40.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980627779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.643 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds