Wall clock time and date at job start Mon Mar 30 2020 01:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86793 * 119.99892 * 2 1 4 4 H 1.48499 * 109.47161 * 85.01509 * 3 2 1 5 5 H 1.48504 * 109.47408 * 325.01870 * 3 2 1 6 6 H 1.48495 * 109.47333 * 205.01707 * 3 2 1 7 7 C 1.38810 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00351 * 195.89997 * 7 2 1 9 9 N 1.36947 * 119.99629 * 15.90380 * 7 2 1 10 10 C 1.43461 * 118.93347 * 205.50797 * 9 7 2 11 11 C 1.53249 * 108.26487 * 273.77727 * 10 9 7 12 12 C 1.47144 * 111.80976 * 281.68447 * 11 10 9 13 13 N 1.48212 * 110.34545 * 58.22588 * 12 11 10 14 14 C 1.34771 * 119.97292 * 102.46539 * 13 12 11 15 15 O 1.21546 * 120.00242 * 176.26849 * 14 13 12 16 16 C 1.47845 * 119.99880 * 356.26698 * 14 13 12 17 17 C 1.40024 * 120.56026 * 124.43757 * 16 14 13 18 18 C 1.38350 * 118.28897 * 179.97438 * 17 16 14 19 19 C 1.38359 * 119.30319 * 359.97438 * 18 17 16 20 20 N 1.31924 * 121.08021 * 0.02580 * 19 18 17 21 21 C 1.31692 * 121.87823 * 359.67403 * 20 19 18 22 22 C 1.43623 * 120.05616 * 282.47953 * 13 12 11 23 23 C 1.48856 * 118.94082 * 25.77548 * 9 7 2 24 24 H 0.96997 * 119.99673 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.76974 * 33.24620 * 10 9 7 26 26 H 1.09000 * 109.76028 * 154.01435 * 10 9 7 27 27 H 1.09000 * 109.07637 * 161.04524 * 11 10 9 28 28 H 1.08998 * 108.89844 * 42.20391 * 11 10 9 29 29 H 1.09003 * 109.32260 * 297.95375 * 12 11 10 30 30 H 1.08999 * 109.18064 * 178.40299 * 12 11 10 31 31 H 1.07995 * 120.85231 * 359.97438 * 17 16 14 32 32 H 1.07999 * 120.35093 * 180.02562 * 18 17 16 33 33 H 1.07998 * 119.45938 * 179.97438 * 19 18 17 34 34 H 1.08004 * 119.71664 * 180.29363 * 21 20 19 35 35 H 1.09006 * 108.87603 * 329.89748 * 22 13 12 36 36 H 1.08994 * 108.87397 * 211.45074 * 22 13 12 37 37 H 1.08999 * 109.47596 * 260.59848 * 23 9 7 38 38 H 1.08996 * 109.48251 * 20.63572 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 1.3948 5 1 1.5043 2.6200 -0.8027 6 1 3.5964 1.4121 -0.5920 7 6 2.0104 -1.2021 0.0005 8 1 3.0593 -1.2199 0.2568 9 7 1.3649 -2.3655 -0.3239 10 6 1.8720 -3.6064 0.1871 11 6 2.9543 -4.1142 -0.7716 12 6 2.3733 -4.7396 -1.9701 13 7 1.5026 -3.7756 -2.6837 14 6 1.9488 -3.1621 -3.7977 15 8 1.2120 -2.4235 -4.4213 16 6 3.3345 -3.3875 -4.2611 17 6 3.5850 -3.8480 -5.5595 18 6 4.8997 -4.0422 -5.9441 19 6 5.9152 -3.7773 -5.0425 20 7 5.6492 -3.3440 -3.8251 21 6 4.4151 -3.1383 -3.4143 22 6 0.1839 -3.4944 -2.1890 23 6 0.1634 -2.3024 -1.2004 24 1 -0.4849 0.8400 -0.0004 25 1 2.3058 -3.4487 1.1746 26 1 1.0648 -4.3361 0.2508 27 1 3.5737 -4.8466 -0.2538 28 1 3.5782 -3.2741 -1.0766 29 1 1.7839 -5.6076 -1.6743 30 1 3.1774 -5.0587 -2.6331 31 1 2.7728 -4.0464 -6.2430 32 1 5.1310 -4.3961 -6.9379 33 1 6.9423 -3.9284 -5.3399 34 1 4.2376 -2.7785 -2.4115 35 1 -0.1986 -4.3800 -1.6815 36 1 -0.4674 -3.2645 -3.0321 37 1 -0.7366 -2.3539 -0.5876 38 1 0.1698 -1.3666 -1.7592 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980627779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:17 Heat of formation + Delta-G solvation = 21.208367 kcal Electronic energy + Delta-G solvation = -22233.406441 eV Core-core repulsion = 19076.311993 eV Total energy + Delta-G solvation = -3157.094448 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.86992 -40.30234 -38.62393 -36.12916 -34.03392 -33.65060 -33.13507 -32.07920 -29.40947 -27.15140 -26.07113 -24.97939 -24.59842 -23.28861 -21.51148 -20.36387 -18.84557 -18.52778 -17.99021 -17.51288 -17.11906 -16.87941 -16.00120 -15.77249 -15.57146 -15.03859 -14.87067 -14.73982 -14.64378 -14.15140 -13.99143 -13.88558 -13.39764 -13.23897 -13.04971 -12.84399 -12.43017 -12.29876 -12.13047 -11.81788 -11.72336 -11.44608 -11.22101 -10.93327 -10.53311 -10.41090 -10.10406 -9.62764 -8.67052 -7.87788 -5.30795 -0.18814 0.21188 1.37758 1.41785 1.48908 1.59998 2.07407 2.48260 2.75017 3.27271 3.30613 3.50045 3.70259 3.85069 3.92135 3.99564 4.09964 4.26730 4.29375 4.49432 4.49916 4.53094 4.72066 4.79176 4.80997 4.93071 4.98788 5.03270 5.11098 5.26099 5.28596 5.53704 5.56415 5.63737 5.68809 5.80109 6.38039 6.38806 6.88372 7.10836 7.16373 7.93598 8.34393 9.17597 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.006975 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.360156 B = 4013.583179 C = 4442.267824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.049 4.049 3 Si 0.950 3.050 4 H -0.280 1.280 5 H -0.300 1.300 6 H -0.275 1.275 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.602 5.602 10 C 0.155 3.845 11 C -0.166 4.166 12 C 0.120 3.880 13 N -0.576 5.576 14 C 0.556 3.444 15 O -0.586 6.586 16 C -0.186 4.186 17 C -0.041 4.041 18 C -0.158 4.158 19 C 0.109 3.891 20 N -0.504 5.504 21 C 0.122 3.878 22 C 0.101 3.899 23 C 0.178 3.822 24 H 0.246 0.754 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.048 0.952 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.184 0.816 33 H 0.197 0.803 34 H 0.149 0.851 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.020 0.980 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.484 -15.116 -9.522 20.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.779 3.221 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.200 1.200 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.325 5.325 10 C 0.028 3.972 11 C -0.206 4.206 12 C 0.000 4.000 13 N -0.305 5.305 14 C 0.344 3.656 15 O -0.467 6.467 16 C -0.191 4.191 17 C -0.067 4.067 18 C -0.177 4.177 19 C -0.047 4.047 20 N -0.213 5.213 21 C -0.035 4.035 22 C -0.024 4.024 23 C 0.052 3.948 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.167 0.833 32 H 0.201 0.799 33 H 0.213 0.787 34 H 0.166 0.834 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 9.658 -14.497 -9.219 19.708 hybrid contribution -0.836 1.548 -0.193 1.770 sum 8.822 -12.949 -9.413 18.278 Atomic orbital electron populations 1.70160 1.06363 1.25344 1.56168 1.25631 0.95937 1.01040 1.01843 0.85515 0.78210 0.80900 0.77471 1.20673 1.22644 1.20008 1.19400 0.92522 0.86363 1.40233 0.91767 1.43857 1.31404 1.02587 1.54646 1.20390 0.94901 0.87110 0.94781 1.21833 1.00160 1.00859 0.97784 1.21015 0.94289 0.90951 0.93768 1.47486 1.16191 1.42289 1.24501 1.18619 0.87009 0.79240 0.80714 1.90735 1.58559 1.39102 1.58350 1.20860 0.93531 1.06826 0.97893 1.21863 0.99294 0.92822 0.92730 1.22504 0.91440 1.00723 1.03063 1.23684 1.02051 0.91223 0.87788 1.67785 1.21508 1.13152 1.18870 1.23123 0.87215 0.93869 0.99292 1.21747 0.83656 0.99494 0.97507 1.21509 0.88393 0.94962 0.89896 0.94473 0.94139 0.92695 0.88458 0.93384 0.88037 0.89654 0.83320 0.79897 0.78653 0.83369 0.88668 0.91727 0.96187 0.95743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 11.04 21.65 0.24 -56.91 16 2 C -0.05 -2.86 4.91 84.86 0.42 -2.44 16 3 Si 0.95 47.52 29.58 68.60 2.03 49.55 16 4 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 6 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.25 -14.06 9.26 84.03 0.78 -13.28 16 8 H 0.06 3.48 7.88 -2.91 -0.02 3.46 16 9 N -0.60 -29.23 2.55 -699.17 -1.78 -31.01 16 10 C 0.15 5.78 5.59 87.02 0.49 6.27 16 11 C -0.17 -4.95 5.47 28.86 0.16 -4.79 16 12 C 0.12 3.18 5.06 84.23 0.43 3.61 16 13 N -0.58 -20.16 2.46 -834.63 -2.05 -22.21 16 14 C 0.56 21.57 7.16 86.79 0.62 22.19 16 15 O -0.59 -27.80 16.61 -3.86 -0.06 -27.87 16 16 C -0.19 -5.83 4.47 -19.99 -0.09 -5.92 16 17 C -0.04 -0.96 9.93 22.73 0.23 -0.73 16 18 C -0.16 -2.59 10.10 22.33 0.23 -2.37 16 19 C 0.11 2.04 11.17 84.71 0.95 2.99 16 20 N -0.50 -13.81 10.35 -194.75 -2.01 -15.83 16 21 C 0.12 3.84 9.08 85.02 0.77 4.61 16 22 C 0.10 3.84 5.28 87.55 0.46 4.31 16 23 C 0.18 8.79 5.19 86.56 0.45 9.24 16 24 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 25 H 0.04 1.56 8.02 -2.39 -0.02 1.54 16 26 H 0.05 1.82 7.58 -2.39 -0.02 1.81 16 27 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.05 1.71 4.94 -2.39 -0.01 1.70 16 29 H 0.10 2.09 8.06 -2.39 -0.02 2.07 16 30 H 0.09 2.02 5.89 -2.39 -0.01 2.01 16 31 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.20 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.15 5.31 5.03 -2.91 -0.01 5.30 16 35 H 0.10 2.93 7.73 -2.38 -0.02 2.91 16 36 H 0.06 2.57 7.32 -2.39 -0.02 2.56 16 37 H 0.02 1.06 7.99 -2.39 -0.02 1.04 16 38 H 0.02 1.43 6.61 -2.39 -0.02 1.42 16 Total: -1.00 -75.56 304.23 3.31 -72.26 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 1.07 Total: 8.36 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: 5.88 Total: 23.67 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -5.61 Total: -125.96 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.06 Total: -27.87 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -75.56 3.31 -72.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980627779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.464 kcal (2) G-P(sol) polarization free energy of solvation -75.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds