Wall clock time and date at job start Mon Mar 30 2020 01:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00238 * 2 1 4 4 H 1.48497 * 109.47078 * 239.99744 * 3 2 1 5 5 H 1.48499 * 109.47170 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47111 * 120.00093 * 3 2 1 7 7 C 1.38810 * 119.99655 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00082 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00129 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99960 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.45580 * 155.00108 * 10 9 7 12 12 C 1.53194 * 109.30749 * 181.38745 * 11 10 9 13 13 N 1.46925 * 108.77645 * 305.36428 * 12 11 10 14 14 C 1.34778 * 120.63150 * 233.58826 * 13 12 11 15 15 O 1.21516 * 119.99975 * 7.71293 * 14 13 12 16 16 C 1.48167 * 119.99817 * 187.71698 * 14 13 12 17 17 C 1.39315 * 119.72138 * 189.53554 * 16 14 13 18 18 C 1.38587 * 119.05874 * 179.76244 * 17 16 14 19 19 C 1.38629 * 118.49003 * 0.48403 * 18 17 16 20 20 C 1.38560 * 119.34760 * 359.47448 * 19 18 17 21 21 N 1.31519 * 120.90816 * 0.29928 * 20 19 18 22 22 C 1.46930 * 118.73817 * 53.86276 * 13 12 11 23 23 C 1.53036 * 109.46006 * 275.07129 * 10 9 7 24 24 H 0.97002 * 119.99271 * 0.02562 * 1 2 3 25 25 H 0.96994 * 120.00030 * 0.02562 * 9 7 2 26 26 H 1.08998 * 109.45573 * 35.02940 * 10 9 7 27 27 H 1.08996 * 109.49550 * 61.43868 * 11 10 9 28 28 H 1.09001 * 109.49790 * 301.33595 * 11 10 9 29 29 H 1.09000 * 109.58579 * 185.58174 * 12 11 10 30 30 H 1.08999 * 109.70928 * 65.22400 * 12 11 10 31 31 H 1.08004 * 120.47092 * 0.02562 * 17 16 14 32 32 H 1.08002 * 120.75693 * 180.25598 * 18 17 16 33 33 H 1.07994 * 120.32906 * 179.75362 * 19 18 17 34 34 H 1.07998 * 119.54671 * 180.28155 * 20 19 18 35 35 H 1.09006 * 109.58453 * 65.92819 * 22 13 12 36 36 H 1.09002 * 109.58441 * 186.34816 * 22 13 12 37 37 H 1.09001 * 109.49775 * 298.56454 * 23 10 9 38 38 H 1.08997 * 109.49940 * 58.66764 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 6 1.1807 -4.7525 0.6083 12 6 1.9622 -6.0698 0.6373 13 7 2.4407 -6.3657 -0.7200 14 6 2.1723 -7.5527 -1.2992 15 8 1.4143 -8.3344 -0.7598 16 6 2.8016 -7.9044 -2.5937 17 6 2.3735 -9.0357 -3.2849 18 6 2.9682 -9.3492 -4.4969 19 6 3.9777 -8.5256 -4.9707 20 6 4.3524 -7.4159 -4.2304 21 7 3.7679 -7.1390 -3.0852 22 6 3.2226 -5.3453 -1.4316 23 6 2.4222 -4.0340 -1.4394 24 1 -0.4849 0.8401 -0.0004 25 1 0.3555 -2.3881 -0.0005 26 1 2.9688 -3.5508 0.5876 27 1 0.2813 -4.8763 0.0052 28 1 0.9024 -4.4722 1.6243 29 1 1.3103 -6.8740 0.9782 30 1 2.8128 -5.9778 1.3126 31 1 1.5865 -9.6573 -2.8841 32 1 2.6549 -10.2174 -5.0577 33 1 4.4642 -8.7443 -5.9097 34 1 5.1353 -6.7696 -4.5987 35 1 4.1741 -5.1928 -0.9219 36 1 3.4026 -5.6714 -2.4560 37 1 1.5111 -4.1646 -2.0233 38 1 3.0276 -3.2424 -1.8809 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989852539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:32 Heat of formation + Delta-G solvation = 32.325235 kcal Electronic energy + Delta-G solvation = -20988.613948 eV Core-core repulsion = 17832.001564 eV Total energy + Delta-G solvation = -3156.612385 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94673 -39.20311 -37.27848 -34.51759 -33.07752 -31.99943 -31.56854 -30.44426 -29.14552 -25.60067 -24.10106 -23.85727 -22.76320 -22.35044 -20.58442 -19.30661 -17.46743 -17.10032 -16.96591 -16.22093 -15.62782 -15.35365 -14.92976 -14.72204 -13.98746 -13.86485 -13.83261 -13.47020 -13.40037 -13.19510 -12.90387 -12.30086 -12.10326 -11.78630 -11.49723 -10.89690 -10.83880 -10.75128 -10.47242 -10.29064 -10.22654 -10.16391 -9.76991 -9.64674 -9.46988 -9.13758 -8.72216 -8.38456 -6.91948 -5.73880 -3.02573 0.43529 0.90824 2.68685 3.05363 3.45184 3.49509 3.50660 3.65385 3.95087 4.48945 4.51289 4.61035 4.69885 4.77835 5.02467 5.33419 5.40238 5.40684 5.50478 5.59605 5.68815 5.70218 5.78793 5.80744 5.93875 6.06826 6.16667 6.29174 6.40920 6.50325 6.60349 6.61419 6.79025 7.01224 7.14944 7.41147 7.60940 7.71543 8.19773 8.44736 9.55543 10.14126 10.49063 11.48840 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027233 B = 0.004039 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.934999 B = 6930.538485 C = 7603.450093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 C -0.137 4.137 12 C 0.113 3.887 13 N -0.581 5.581 14 C 0.565 3.435 15 O -0.545 6.545 16 C 0.086 3.914 17 C -0.114 4.114 18 C -0.081 4.081 19 C -0.154 4.154 20 C 0.092 3.908 21 N -0.445 5.445 22 C 0.072 3.928 23 C -0.150 4.150 24 H 0.255 0.745 25 H 0.383 0.617 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.148 0.852 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.165 0.835 35 H 0.061 0.939 36 H 0.141 0.859 37 H 0.054 0.946 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.484 -18.833 -9.027 22.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 C -0.176 4.176 12 C -0.010 4.010 13 N -0.311 5.311 14 C 0.352 3.648 15 O -0.424 6.424 16 C -0.051 4.051 17 C -0.134 4.134 18 C -0.107 4.107 19 C -0.174 4.174 20 C -0.066 4.066 21 N -0.157 5.157 22 C -0.050 4.050 23 C -0.191 4.191 24 H 0.065 0.935 25 H 0.217 0.783 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.182 0.818 35 H 0.079 0.921 36 H 0.157 0.843 37 H 0.073 0.927 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.432 -18.330 -8.200 21.780 hybrid contribution -0.059 0.427 -0.583 0.725 sum 8.373 -17.903 -8.783 21.628 Atomic orbital electron populations 1.69662 1.05119 1.25701 1.57751 1.24740 0.95491 0.97651 1.03122 0.86279 0.78510 0.83646 0.77819 1.21305 1.21748 1.21296 1.19206 0.90950 0.84149 1.42612 0.91233 1.42442 1.05777 0.99756 1.88585 1.20217 0.94301 0.85939 0.92867 1.22186 0.99197 0.94079 1.02173 1.21707 0.98838 0.98266 0.82161 1.48047 1.52312 1.14370 1.16420 1.17900 0.81125 0.82114 0.83703 1.90751 1.36487 1.50754 1.64370 1.21295 0.94842 0.93178 0.95807 1.22125 1.00056 0.96656 0.94598 1.21647 0.94776 0.99225 0.95045 1.22363 0.97800 0.95944 1.01260 1.23046 0.97680 0.95416 0.90509 1.67723 1.07714 1.27160 1.13064 1.23196 0.93115 0.87474 1.01235 1.22744 0.99894 0.95412 1.01027 0.93508 0.78338 0.93504 0.91864 0.90575 0.89404 0.91342 0.83435 0.84101 0.84270 0.81828 0.92055 0.84316 0.92711 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.41 5.12 -53.38 -0.27 -18.68 16 10 C 0.18 3.57 2.73 -67.89 -0.19 3.38 16 11 C -0.14 -2.41 5.55 -26.61 -0.15 -2.56 16 12 C 0.11 1.74 6.44 -3.71 -0.02 1.72 16 13 N -0.58 -9.15 2.97 -173.49 -0.51 -9.66 16 14 C 0.57 8.99 7.65 -12.18 -0.09 8.90 16 15 O -0.55 -9.78 15.79 5.35 0.08 -9.70 16 16 C 0.09 1.14 6.58 -83.00 -0.55 0.59 16 17 C -0.11 -1.21 9.63 -39.05 -0.38 -1.58 16 18 C -0.08 -0.61 10.17 -39.31 -0.40 -1.01 16 19 C -0.15 -1.05 10.11 -39.32 -0.40 -1.45 16 20 C 0.09 0.79 11.18 -17.57 -0.20 0.59 16 21 N -0.44 -5.32 6.12 -9.80 -0.06 -5.38 16 22 C 0.07 1.10 5.92 -3.48 -0.02 1.08 16 23 C -0.15 -2.74 5.67 -26.39 -0.15 -2.89 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.38 10.42 7.80 -40.82 -0.32 10.10 16 26 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.09 1.36 7.00 -51.93 -0.36 0.99 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.15 1.50 7.67 -52.48 -0.40 1.10 16 32 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 34 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.14 2.00 4.00 -85.16 -0.34 1.66 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 314.72 15.07 4.74 4.74 Total: -1.00 -33.04 314.72 -8.30 -41.34 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.20 Total: 8.18 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -2.78 Total: -0.51 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -0.12 Total: -61.48 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.04 -8.30 -41.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989852539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.663 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds