Wall clock time and date at job start Mon Mar 30 2020 01:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00238 * 2 1 4 4 H 1.48497 * 109.47078 * 239.99744 * 3 2 1 5 5 H 1.48499 * 109.47170 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47111 * 120.00093 * 3 2 1 7 7 C 1.38810 * 119.99655 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00082 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00129 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99960 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.45580 * 155.00108 * 10 9 7 12 12 C 1.53194 * 109.30749 * 181.38745 * 11 10 9 13 13 N 1.46925 * 108.77645 * 305.36428 * 12 11 10 14 14 C 1.34778 * 120.63150 * 233.58826 * 13 12 11 15 15 O 1.21516 * 119.99975 * 7.71293 * 14 13 12 16 16 C 1.48167 * 119.99817 * 187.71698 * 14 13 12 17 17 C 1.39315 * 119.72138 * 189.53554 * 16 14 13 18 18 C 1.38587 * 119.05874 * 179.76244 * 17 16 14 19 19 C 1.38629 * 118.49003 * 0.48403 * 18 17 16 20 20 C 1.38560 * 119.34760 * 359.47448 * 19 18 17 21 21 N 1.31519 * 120.90816 * 0.29928 * 20 19 18 22 22 C 1.46930 * 118.73817 * 53.86276 * 13 12 11 23 23 C 1.53036 * 109.46006 * 275.07129 * 10 9 7 24 24 H 0.97002 * 119.99271 * 0.02562 * 1 2 3 25 25 H 0.96994 * 120.00030 * 0.02562 * 9 7 2 26 26 H 1.08998 * 109.45573 * 35.02940 * 10 9 7 27 27 H 1.08996 * 109.49550 * 61.43868 * 11 10 9 28 28 H 1.09001 * 109.49790 * 301.33595 * 11 10 9 29 29 H 1.09000 * 109.58579 * 185.58174 * 12 11 10 30 30 H 1.08999 * 109.70928 * 65.22400 * 12 11 10 31 31 H 1.08004 * 120.47092 * 0.02562 * 17 16 14 32 32 H 1.08002 * 120.75693 * 180.25598 * 18 17 16 33 33 H 1.07994 * 120.32906 * 179.75362 * 19 18 17 34 34 H 1.07998 * 119.54671 * 180.28155 * 20 19 18 35 35 H 1.09006 * 109.58453 * 65.92819 * 22 13 12 36 36 H 1.09002 * 109.58441 * 186.34816 * 22 13 12 37 37 H 1.09001 * 109.49775 * 298.56454 * 23 10 9 38 38 H 1.08997 * 109.49940 * 58.66764 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 6 1.1807 -4.7525 0.6083 12 6 1.9622 -6.0698 0.6373 13 7 2.4407 -6.3657 -0.7200 14 6 2.1723 -7.5527 -1.2992 15 8 1.4143 -8.3344 -0.7598 16 6 2.8016 -7.9044 -2.5937 17 6 2.3735 -9.0357 -3.2849 18 6 2.9682 -9.3492 -4.4969 19 6 3.9777 -8.5256 -4.9707 20 6 4.3524 -7.4159 -4.2304 21 7 3.7679 -7.1390 -3.0852 22 6 3.2226 -5.3453 -1.4316 23 6 2.4222 -4.0340 -1.4394 24 1 -0.4849 0.8401 -0.0004 25 1 0.3555 -2.3881 -0.0005 26 1 2.9688 -3.5508 0.5876 27 1 0.2813 -4.8763 0.0052 28 1 0.9024 -4.4722 1.6243 29 1 1.3103 -6.8740 0.9782 30 1 2.8128 -5.9778 1.3126 31 1 1.5865 -9.6573 -2.8841 32 1 2.6549 -10.2174 -5.0577 33 1 4.4642 -8.7443 -5.9097 34 1 5.1353 -6.7696 -4.5987 35 1 4.1741 -5.1928 -0.9219 36 1 3.4026 -5.6714 -2.4560 37 1 1.5111 -4.1646 -2.0233 38 1 3.0276 -3.2424 -1.8809 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989852539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:31 Heat of formation + Delta-G solvation = 10.642219 kcal Electronic energy + Delta-G solvation = -20989.554195 eV Core-core repulsion = 17832.001564 eV Total energy + Delta-G solvation = -3157.552631 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.89412 -40.25923 -38.71170 -36.20513 -34.17875 -33.42035 -32.58301 -31.69565 -30.93367 -26.99388 -25.54948 -24.68395 -24.12504 -23.72638 -21.90899 -20.64590 -19.13821 -18.47884 -17.96237 -16.98355 -16.82539 -16.56622 -16.46287 -15.76691 -15.51115 -15.37460 -15.01595 -14.84837 -14.67433 -14.49395 -14.07951 -13.72692 -13.28928 -13.03112 -12.85387 -12.78944 -12.57468 -12.22303 -12.17380 -12.02688 -11.72485 -11.40068 -11.33138 -10.96946 -10.90939 -10.22975 -9.93431 -9.66528 -8.97986 -7.92795 -5.22037 -0.35087 0.25495 1.47955 1.51292 1.57266 1.66671 1.92144 2.57306 2.83886 3.05014 3.40509 3.64443 3.81111 3.93026 3.99627 4.07215 4.10852 4.15328 4.23727 4.37489 4.39967 4.50551 4.63147 4.78122 4.79280 4.88887 5.00295 5.02780 5.09652 5.18716 5.22931 5.31303 5.48904 5.53279 5.58676 5.83616 6.28366 6.32750 6.69179 7.04060 7.34191 8.09345 8.33673 9.30842 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027233 B = 0.004039 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.934999 B = 6930.538485 C = 7603.450093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.239 4.239 8 H 0.078 0.922 9 N -0.739 5.739 10 C 0.172 3.828 11 C -0.126 4.126 12 C 0.118 3.882 13 N -0.588 5.588 14 C 0.560 3.440 15 O -0.576 6.576 16 C 0.052 3.948 17 C -0.122 4.122 18 C -0.076 4.076 19 C -0.133 4.133 20 C 0.084 3.916 21 N -0.469 5.469 22 C 0.084 3.916 23 C -0.138 4.138 24 H 0.250 0.750 25 H 0.370 0.630 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.142 0.858 32 H 0.176 0.824 33 H 0.181 0.819 34 H 0.193 0.807 35 H 0.072 0.928 36 H 0.156 0.844 37 H 0.036 0.964 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.897 -20.065 -10.953 25.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.203 1.203 7 C -0.370 4.370 8 H 0.096 0.904 9 N -0.378 5.378 10 C 0.064 3.936 11 C -0.165 4.165 12 C -0.005 4.005 13 N -0.318 5.318 14 C 0.348 3.652 15 O -0.457 6.457 16 C -0.084 4.084 17 C -0.143 4.143 18 C -0.101 4.101 19 C -0.153 4.153 20 C -0.074 4.074 21 N -0.181 5.181 22 C -0.038 4.038 23 C -0.179 4.179 24 H 0.059 0.941 25 H 0.201 0.799 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.160 0.840 32 H 0.194 0.806 33 H 0.199 0.801 34 H 0.210 0.790 35 H 0.090 0.910 36 H 0.172 0.828 37 H 0.054 0.946 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.889 -19.603 -10.128 24.606 hybrid contribution -0.748 0.681 -0.087 1.016 sum 10.141 -18.922 -10.215 23.774 Atomic orbital electron populations 1.69835 1.06754 1.26033 1.59778 1.25580 0.96332 1.01154 1.03903 0.85202 0.77151 0.79095 0.78273 1.20222 1.22419 1.20325 1.19618 0.91495 0.85112 1.40804 0.90389 1.42665 1.05334 1.01062 1.88742 1.20447 0.94223 0.84715 0.94240 1.22038 0.98421 0.94492 1.01549 1.21642 0.99243 0.96677 0.82905 1.48123 1.52486 1.14728 1.16430 1.18433 0.80571 0.81558 0.84606 1.90713 1.37892 1.51519 1.65527 1.20943 0.96742 0.95176 0.95505 1.22236 1.00333 0.95893 0.95842 1.22075 0.94146 1.00177 0.93706 1.22843 0.96381 0.94131 1.01917 1.23637 0.97835 0.96550 0.89411 1.67407 1.08026 1.27857 1.14826 1.23192 0.92502 0.85469 1.02631 1.22542 0.99357 0.97019 0.98944 0.94139 0.79915 0.93342 0.93393 0.90569 0.89437 0.89497 0.83985 0.80649 0.80135 0.78987 0.90989 0.82800 0.94554 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.73 13.06 21.65 0.28 -60.45 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.97 46.41 29.55 68.60 2.03 48.43 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.24 -13.37 9.93 84.03 0.83 -12.54 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.74 -38.38 5.12 -322.80 -1.65 -40.03 16 10 C 0.17 7.03 2.73 45.02 0.12 7.15 16 11 C -0.13 -4.52 5.55 30.67 0.17 -4.35 16 12 C 0.12 3.64 6.44 86.36 0.56 4.20 16 13 N -0.59 -18.49 2.97 -821.08 -2.44 -20.93 16 14 C 0.56 18.00 7.65 86.88 0.67 18.66 16 15 O -0.58 -21.19 15.79 -3.77 -0.06 -21.24 16 16 C 0.05 1.33 6.58 41.91 0.28 1.61 16 17 C -0.12 -2.43 9.63 22.61 0.22 -2.21 16 18 C -0.08 -0.87 10.17 22.45 0.23 -0.64 16 19 C -0.13 -1.21 10.11 22.44 0.23 -0.98 16 20 C 0.08 1.16 11.18 84.82 0.95 2.11 16 21 N -0.47 -10.40 6.12 -184.91 -1.13 -11.54 16 22 C 0.08 2.51 5.92 86.51 0.51 3.03 16 23 C -0.14 -5.09 5.67 30.82 0.17 -4.91 16 24 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 25 H 0.37 20.88 7.80 -92.71 -0.72 20.16 16 26 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 27 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.09 2.74 7.00 -2.39 -0.02 2.72 16 30 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.14 2.87 7.67 -2.91 -0.02 2.85 16 32 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 33 H 0.18 0.20 8.06 -2.91 -0.02 0.17 16 34 H 0.19 1.41 8.06 -2.91 -0.02 1.38 16 35 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.16 4.28 4.00 -68.01 -0.27 4.01 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -73.53 314.72 2.52 -71.02 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 0.09 Total: 27.67 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 5.40 Total: 7.06 kcal Atomic # 7 Polarization: -128.00 SS G_CDS: -4.94 Total: -132.94 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.06 Total: -21.24 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -73.53 2.52 -71.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989852539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.658 kcal (2) G-P(sol) polarization free energy of solvation -73.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds