Wall clock time and date at job start Mon Mar 30 2020 01:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99929 * 2 1 4 4 H 1.48500 * 109.47221 * 270.00004 * 3 2 1 5 5 H 1.48504 * 109.47330 * 30.00430 * 3 2 1 6 6 H 1.48502 * 109.47231 * 149.99765 * 3 2 1 7 7 C 1.38816 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99787 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99664 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99759 * 179.97438 * 9 7 2 11 11 C 1.53037 * 109.46446 * 204.99979 * 10 9 7 12 12 C 1.53189 * 109.31604 * 178.62996 * 11 10 9 13 13 N 1.46922 * 108.89275 * 54.56569 * 12 11 10 14 14 C 1.34779 * 120.62970 * 126.46014 * 13 12 11 15 15 O 1.21544 * 120.00046 * 354.14234 * 14 13 12 16 16 C 1.47844 * 119.99639 * 174.13817 * 14 13 12 17 17 C 1.40030 * 120.55466 * 143.81715 * 16 14 13 18 18 C 1.38359 * 118.28603 * 179.73277 * 17 16 14 19 19 C 1.38358 * 119.30162 * 0.56194 * 18 17 16 20 20 N 1.31926 * 121.07864 * 359.69951 * 19 18 17 21 21 C 1.31696 * 121.88031 * 359.97438 * 20 19 18 22 22 C 1.46964 * 118.71730 * 306.64422 * 13 12 11 23 23 C 1.53045 * 109.44456 * 84.93878 * 10 9 7 24 24 H 0.97002 * 120.00027 * 359.97438 * 1 2 3 25 25 H 0.96999 * 120.00447 * 0.02562 * 9 7 2 26 26 H 1.09002 * 109.46175 * 324.98098 * 10 9 7 27 27 H 1.09007 * 109.49316 * 58.67382 * 11 10 9 28 28 H 1.09001 * 109.52283 * 298.60296 * 11 10 9 29 29 H 1.09000 * 109.58380 * 174.42197 * 12 11 10 30 30 H 1.08999 * 109.58216 * 294.70872 * 12 11 10 31 31 H 1.07993 * 120.85771 * 0.02562 * 17 16 14 32 32 H 1.07997 * 120.35198 * 180.26055 * 18 17 16 33 33 H 1.08000 * 119.46040 * 179.72003 * 19 18 17 34 34 H 1.08003 * 119.71380 * 179.97438 * 21 20 19 35 35 H 1.09006 * 109.46394 * 293.57202 * 22 13 12 36 36 H 1.08994 * 109.71563 * 173.28956 * 22 13 12 37 37 H 1.08998 * 109.50154 * 301.32880 * 23 10 9 38 38 H 1.09001 * 109.49930 * 61.43214 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0011 11 6 5.4999 -2.2580 0.6102 12 6 6.2499 -3.5933 0.6411 13 7 6.2665 -4.1611 -0.7139 14 6 7.4285 -4.5249 -1.2918 15 8 8.4836 -4.2873 -0.7372 16 6 7.4196 -5.2130 -2.6003 17 6 8.4199 -4.9568 -3.5462 18 6 8.3691 -5.6312 -4.7532 19 6 7.3351 -6.5196 -4.9895 20 7 6.4030 -6.7370 -4.0815 21 6 6.4116 -6.1246 -2.9156 22 6 4.9921 -4.3209 -1.4282 23 6 4.2560 -2.9774 -1.4359 24 1 -0.4850 0.8401 0.0004 25 1 3.8646 -0.3621 -0.0004 26 1 3.5650 -3.2056 0.5919 27 1 5.3966 -1.8750 1.6255 28 1 6.0568 -1.5417 0.0061 29 1 7.2725 -3.4301 0.9814 30 1 5.7443 -4.2807 1.3192 31 1 9.2132 -4.2546 -3.3370 32 1 9.1258 -5.4622 -5.5050 33 1 7.2904 -7.0440 -5.9326 34 1 5.6306 -6.3286 -2.1980 35 1 4.3825 -5.0686 -0.9207 36 1 5.1825 -4.6391 -2.4531 37 1 3.2677 -3.1066 -1.8769 38 1 4.8245 -2.2546 -2.0212 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989859148.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:54 Heat of formation + Delta-G solvation = 25.831183 kcal Electronic energy + Delta-G solvation = -21024.193597 eV Core-core repulsion = 17867.299609 eV Total energy + Delta-G solvation = -3156.893988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02852 -39.41659 -37.52105 -34.77487 -32.88192 -32.54396 -31.71690 -30.56416 -29.78541 -25.76467 -24.22017 -24.02968 -22.90117 -22.20067 -20.61353 -19.47090 -17.85537 -17.42292 -17.29199 -16.58983 -15.93832 -15.17169 -14.91322 -14.68280 -14.17722 -14.05963 -13.92153 -13.56974 -13.43134 -13.37182 -12.99373 -12.60625 -12.30874 -12.14814 -11.88542 -11.13713 -11.06713 -10.94134 -10.64149 -10.35795 -10.25850 -10.20852 -9.94495 -9.66518 -9.63523 -9.38660 -8.96922 -8.66790 -7.33413 -5.82018 -3.18175 0.44812 0.90420 2.58880 2.87772 3.34119 3.37466 3.42441 3.51880 4.02425 4.31399 4.50875 4.54823 4.55454 4.70763 4.92902 5.02823 5.08165 5.17310 5.25123 5.30961 5.42526 5.48370 5.57825 5.70263 5.72743 5.80270 5.84724 6.03057 6.09429 6.19568 6.25434 6.31392 6.45386 6.72658 6.87125 7.29868 7.55660 7.93226 8.00238 8.37025 9.14989 9.87810 10.07323 11.36131 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.004198 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.888664 B = 6668.984618 C = 7070.017908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.183 3.817 11 C -0.143 4.143 12 C 0.117 3.883 13 N -0.598 5.598 14 C 0.563 3.437 15 O -0.541 6.541 16 C -0.180 4.180 17 C -0.023 4.023 18 C -0.180 4.180 19 C 0.116 3.884 20 N -0.487 5.487 21 C 0.131 3.869 22 C 0.094 3.906 23 C -0.151 4.151 24 H 0.260 0.740 25 H 0.361 0.639 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.168 0.832 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.268 -12.169 -7.162 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.073 3.927 11 C -0.182 4.182 12 C -0.006 4.006 13 N -0.331 5.331 14 C 0.351 3.649 15 O -0.419 6.419 16 C -0.185 4.185 17 C -0.050 4.050 18 C -0.199 4.199 19 C -0.040 4.040 20 N -0.195 5.195 21 C -0.027 4.027 22 C -0.029 4.029 23 C -0.192 4.192 24 H 0.070 0.930 25 H 0.194 0.806 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.178 0.822 34 H 0.185 0.815 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.870 -12.678 -7.016 21.490 hybrid contribution 1.100 1.946 0.029 2.236 sum 16.969 -10.732 -6.986 21.259 Atomic orbital electron populations 1.69699 1.05114 1.25894 1.57311 1.24668 0.95205 0.97207 1.01886 0.86567 0.79232 0.85037 0.77777 1.21130 1.21703 1.20328 1.19068 0.80505 0.94719 1.43298 0.89118 1.42794 1.04038 1.01952 1.90209 1.20152 0.90217 0.89493 0.92804 1.22249 0.97178 0.96395 1.02352 1.21650 1.02218 0.94829 0.81854 1.48085 1.06485 1.61479 1.17012 1.18087 0.83751 0.78640 0.84459 1.90764 1.30534 1.55986 1.64665 1.20994 0.98826 1.02109 0.96541 1.21681 0.95716 0.95954 0.91605 1.22148 1.00860 0.98764 0.98157 1.23013 0.89206 0.93894 0.97933 1.67769 1.25791 1.23842 1.02090 1.23301 0.95088 0.90510 0.93800 1.22320 0.83874 0.99729 0.96973 1.22648 1.00561 0.94579 1.01382 0.93010 0.80632 0.92375 0.90293 0.91901 0.89107 0.90960 0.83936 0.84034 0.82223 0.81536 0.90661 0.89691 0.89899 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.76 13.97 55.49 0.78 -27.99 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 21.79 27.73 -169.99 -4.71 17.08 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 7 C -0.25 -6.69 10.41 -15.06 -0.16 -6.84 16 8 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 9 N -0.75 -16.94 4.92 -53.38 -0.26 -17.21 16 10 C 0.18 3.25 2.73 -67.89 -0.19 3.06 16 11 C -0.14 -2.14 5.55 -26.61 -0.15 -2.29 16 12 C 0.12 1.52 6.44 -3.71 -0.02 1.50 16 13 N -0.60 -7.82 2.98 -173.86 -0.52 -8.34 16 14 C 0.56 7.83 7.39 -12.33 -0.09 7.74 16 15 O -0.54 -9.05 16.32 5.33 0.09 -8.96 16 16 C -0.18 -2.12 5.28 -104.82 -0.55 -2.67 16 17 C -0.02 -0.23 9.77 -38.87 -0.38 -0.61 16 18 C -0.18 -1.42 10.10 -39.49 -0.40 -1.82 16 19 C 0.12 0.99 11.17 -17.47 -0.20 0.79 16 20 N -0.49 -5.32 10.35 -12.91 -0.13 -5.45 16 21 C 0.13 1.43 8.55 -17.13 -0.15 1.28 16 22 C 0.09 1.15 4.79 -3.69 -0.02 1.13 16 23 C -0.15 -2.37 5.66 -26.61 -0.15 -2.52 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.36 8.18 5.66 -40.82 -0.23 7.95 16 26 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.09 1.22 7.00 -51.93 -0.36 0.85 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.16 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.17 1.59 6.13 -52.48 -0.32 1.27 16 35 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.09 0.96 4.53 -51.93 -0.24 0.72 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 311.06 15.07 4.69 4.69 Total: -1.00 -33.10 311.06 -7.58 -40.68 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -4.96 Total: 6.67 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -2.54 Total: -1.16 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.14 Total: -58.99 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.08 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.10 -7.58 -40.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989859148.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.513 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds