Wall clock time and date at job start Mon Mar 30 2020 01:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99929 * 2 1 4 4 H 1.48500 * 109.47221 * 270.00004 * 3 2 1 5 5 H 1.48504 * 109.47330 * 30.00430 * 3 2 1 6 6 H 1.48502 * 109.47231 * 149.99765 * 3 2 1 7 7 C 1.38816 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99787 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99664 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99759 * 179.97438 * 9 7 2 11 11 C 1.53037 * 109.46446 * 204.99979 * 10 9 7 12 12 C 1.53189 * 109.31604 * 178.62996 * 11 10 9 13 13 N 1.46922 * 108.89275 * 54.56569 * 12 11 10 14 14 C 1.34779 * 120.62970 * 126.46014 * 13 12 11 15 15 O 1.21544 * 120.00046 * 354.14234 * 14 13 12 16 16 C 1.47844 * 119.99639 * 174.13817 * 14 13 12 17 17 C 1.40030 * 120.55466 * 143.81715 * 16 14 13 18 18 C 1.38359 * 118.28603 * 179.73277 * 17 16 14 19 19 C 1.38358 * 119.30162 * 0.56194 * 18 17 16 20 20 N 1.31926 * 121.07864 * 359.69951 * 19 18 17 21 21 C 1.31696 * 121.88031 * 359.97438 * 20 19 18 22 22 C 1.46964 * 118.71730 * 306.64422 * 13 12 11 23 23 C 1.53045 * 109.44456 * 84.93878 * 10 9 7 24 24 H 0.97002 * 120.00027 * 359.97438 * 1 2 3 25 25 H 0.96999 * 120.00447 * 0.02562 * 9 7 2 26 26 H 1.09002 * 109.46175 * 324.98098 * 10 9 7 27 27 H 1.09007 * 109.49316 * 58.67382 * 11 10 9 28 28 H 1.09001 * 109.52283 * 298.60296 * 11 10 9 29 29 H 1.09000 * 109.58380 * 174.42197 * 12 11 10 30 30 H 1.08999 * 109.58216 * 294.70872 * 12 11 10 31 31 H 1.07993 * 120.85771 * 0.02562 * 17 16 14 32 32 H 1.07997 * 120.35198 * 180.26055 * 18 17 16 33 33 H 1.08000 * 119.46040 * 179.72003 * 19 18 17 34 34 H 1.08003 * 119.71380 * 179.97438 * 21 20 19 35 35 H 1.09006 * 109.46394 * 293.57202 * 22 13 12 36 36 H 1.08994 * 109.71563 * 173.28956 * 22 13 12 37 37 H 1.08998 * 109.50154 * 301.32880 * 23 10 9 38 38 H 1.09001 * 109.49930 * 61.43214 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0011 11 6 5.4999 -2.2580 0.6102 12 6 6.2499 -3.5933 0.6411 13 7 6.2665 -4.1611 -0.7139 14 6 7.4285 -4.5249 -1.2918 15 8 8.4836 -4.2873 -0.7372 16 6 7.4196 -5.2130 -2.6003 17 6 8.4199 -4.9568 -3.5462 18 6 8.3691 -5.6312 -4.7532 19 6 7.3351 -6.5196 -4.9895 20 7 6.4030 -6.7370 -4.0815 21 6 6.4116 -6.1246 -2.9156 22 6 4.9921 -4.3209 -1.4282 23 6 4.2560 -2.9774 -1.4359 24 1 -0.4850 0.8401 0.0004 25 1 3.8646 -0.3621 -0.0004 26 1 3.5650 -3.2056 0.5919 27 1 5.3966 -1.8750 1.6255 28 1 6.0568 -1.5417 0.0061 29 1 7.2725 -3.4301 0.9814 30 1 5.7443 -4.2807 1.3192 31 1 9.2132 -4.2546 -3.3370 32 1 9.1258 -5.4622 -5.5050 33 1 7.2904 -7.0440 -5.9326 34 1 5.6306 -6.3286 -2.1980 35 1 4.3825 -5.0686 -0.9207 36 1 5.1825 -4.6391 -2.4531 37 1 3.2677 -3.1066 -1.8769 38 1 4.8245 -2.2546 -2.0212 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989859148.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:53 Heat of formation + Delta-G solvation = 3.074150 kcal Electronic energy + Delta-G solvation = -21025.180416 eV Core-core repulsion = 17867.299609 eV Total energy + Delta-G solvation = -3157.880807 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.94134 -40.35759 -38.80466 -36.34391 -34.14846 -33.57619 -33.00841 -31.69695 -31.32340 -27.05105 -25.37335 -25.01643 -24.01711 -23.62003 -21.91566 -20.68042 -19.54707 -18.63366 -18.05730 -17.45172 -16.97304 -16.72490 -16.20169 -15.88941 -15.51743 -15.08112 -15.01192 -14.84849 -14.66113 -14.47359 -14.18482 -14.07765 -13.56813 -13.25906 -13.10941 -12.94456 -12.63287 -12.26039 -12.07537 -12.05168 -11.79398 -11.37526 -11.33787 -10.97938 -10.94647 -10.48029 -10.13874 -9.77809 -9.30912 -8.01719 -5.34786 -0.32286 0.18258 1.37821 1.39531 1.47049 1.58276 1.87600 2.48347 2.75857 3.21182 3.30067 3.50479 3.52522 3.76511 3.83907 3.91552 3.98347 4.04279 4.11770 4.26033 4.34966 4.44579 4.54272 4.65987 4.69202 4.75095 4.81397 4.92811 4.99749 5.01130 5.09258 5.24303 5.41576 5.53993 5.58448 5.78613 6.22460 6.24345 6.82971 6.95665 7.08349 7.84912 8.02856 9.19665 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.004198 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.888664 B = 6668.984618 C = 7070.017908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.950 3.050 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.254 1.254 7 C -0.225 4.225 8 H 0.063 0.937 9 N -0.753 5.753 10 C 0.175 3.825 11 C -0.132 4.132 12 C 0.121 3.879 13 N -0.598 5.598 14 C 0.564 3.436 15 O -0.575 6.575 16 C -0.199 4.199 17 C -0.035 4.035 18 C -0.167 4.167 19 C 0.116 3.884 20 N -0.508 5.508 21 C 0.126 3.874 22 C 0.105 3.895 23 C -0.142 4.142 24 H 0.257 0.743 25 H 0.363 0.637 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.177 0.823 33 H 0.193 0.807 34 H 0.175 0.825 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.433 -12.938 -8.283 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.254 4.254 3 Si 0.778 3.222 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.178 1.178 7 C -0.356 4.356 8 H 0.081 0.919 9 N -0.395 5.395 10 C 0.068 3.932 11 C -0.170 4.170 12 C -0.002 4.002 13 N -0.329 5.329 14 C 0.353 3.647 15 O -0.456 6.456 16 C -0.204 4.204 17 C -0.061 4.061 18 C -0.186 4.186 19 C -0.040 4.040 20 N -0.217 5.217 21 C -0.031 4.031 22 C -0.018 4.018 23 C -0.183 4.183 24 H 0.066 0.934 25 H 0.196 0.804 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.162 0.838 32 H 0.194 0.806 33 H 0.210 0.790 34 H 0.192 0.808 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.081 -13.486 -8.140 23.980 hybrid contribution 0.462 2.052 0.305 2.125 sum 18.543 -11.434 -7.835 23.151 Atomic orbital electron populations 1.69870 1.07038 1.26528 1.59985 1.25427 0.95986 1.00962 1.02986 0.85489 0.78684 0.80212 0.77854 1.20873 1.22442 1.17823 1.19049 0.82470 0.93488 1.40632 0.91924 1.42848 1.02545 1.03917 1.90232 1.20416 0.91216 0.87415 0.94197 1.22114 0.95255 0.97542 1.02134 1.21629 1.02030 0.94140 0.82366 1.48118 1.06613 1.61200 1.16979 1.18414 0.83218 0.78134 0.84924 1.90740 1.31590 1.57557 1.65669 1.20910 1.00307 1.03202 0.96029 1.21901 0.95438 0.96452 0.92317 1.22502 1.01117 0.97259 0.97763 1.23640 0.88403 0.93511 0.98478 1.67819 1.26981 1.24401 1.02461 1.23376 0.95119 0.90427 0.94212 1.22282 0.83367 0.97880 0.98259 1.22447 1.00039 0.96424 0.99380 0.93445 0.80441 0.92727 0.89864 0.92457 0.89181 0.89058 0.83750 0.80583 0.79003 0.80846 0.88657 0.88244 0.91672 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.22 13.97 21.65 0.30 -61.92 16 2 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 3 Si 0.95 45.13 27.73 68.60 1.90 47.04 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.25 -10.91 6.52 99.48 0.65 -10.26 16 7 C -0.23 -12.38 10.41 84.03 0.87 -11.51 16 8 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 9 N -0.75 -33.65 4.92 -322.80 -1.59 -35.24 16 10 C 0.18 6.07 2.73 45.02 0.12 6.19 16 11 C -0.13 -3.74 5.55 30.67 0.17 -3.57 16 12 C 0.12 2.94 6.44 86.36 0.56 3.49 16 13 N -0.60 -14.70 2.98 -822.23 -2.45 -17.16 16 14 C 0.56 15.05 7.39 86.79 0.64 15.69 16 15 O -0.57 -18.83 16.32 -3.85 -0.06 -18.89 16 16 C -0.20 -4.40 5.28 -19.99 -0.11 -4.51 16 17 C -0.03 -0.64 9.77 22.73 0.22 -0.42 16 18 C -0.17 -2.10 10.10 22.33 0.23 -1.87 16 19 C 0.12 1.60 11.17 84.71 0.95 2.55 16 20 N -0.51 -9.94 10.35 -194.75 -2.01 -11.95 16 21 C 0.13 2.53 8.55 85.02 0.73 3.25 16 22 C 0.10 2.39 4.79 86.36 0.41 2.80 16 23 C -0.14 -4.37 5.66 30.67 0.17 -4.19 16 24 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 25 H 0.36 15.90 5.66 -92.71 -0.52 15.37 16 26 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 27 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 28 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.09 2.28 7.00 -2.39 -0.02 2.26 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 33 H 0.19 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.17 3.01 6.13 -2.91 -0.02 2.99 16 35 H 0.10 1.84 8.07 -2.38 -0.02 1.82 16 36 H 0.10 2.06 4.53 -2.39 -0.01 2.05 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -72.54 311.06 2.01 -70.52 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.49 Total: 22.82 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 5.44 Total: 4.77 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -5.75 Total: -126.27 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.06 Total: -18.89 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.04 kcal Total: -72.54 2.01 -70.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989859148.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.598 kcal (2) G-P(sol) polarization free energy of solvation -72.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds