Wall clock time and date at job start Mon Mar 30 2020 02:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00104 * 2 1 4 4 H 1.48497 * 109.47206 * 239.99986 * 3 2 1 5 5 H 1.48506 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47085 * 119.99874 * 3 2 1 7 7 C 1.38817 * 119.99576 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99298 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00084 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99469 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.45428 * 155.00323 * 10 9 7 12 12 C 1.53188 * 109.31078 * 181.38754 * 11 10 9 13 13 N 1.46933 * 108.77511 * 305.36092 * 12 11 10 14 14 C 1.34773 * 120.63030 * 233.58518 * 13 12 11 15 15 O 1.21517 * 119.99635 * 183.76027 * 14 13 12 16 16 C 1.48148 * 120.00286 * 3.75939 * 14 13 12 17 17 C 1.39816 * 120.92135 * 310.04003 * 16 14 13 18 18 C 1.38151 * 118.99928 * 179.77448 * 17 16 14 19 19 N 1.31803 * 120.89843 * 0.51732 * 18 17 16 20 20 C 1.31817 * 122.04614 * 359.73819 * 19 18 17 21 21 C 1.38144 * 120.89709 * 359.97438 * 20 19 18 22 22 C 1.46927 * 118.73428 * 53.86499 * 13 12 11 23 23 C 1.53038 * 109.46232 * 275.06777 * 10 9 7 24 24 H 0.96998 * 120.00150 * 359.97438 * 1 2 3 25 25 H 0.96999 * 120.00120 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.46115 * 35.03603 * 10 9 7 27 27 H 1.08996 * 109.50287 * 61.43629 * 11 10 9 28 28 H 1.09001 * 109.52748 * 301.35231 * 11 10 9 29 29 H 1.09005 * 109.59018 * 185.58033 * 12 11 10 30 30 H 1.09002 * 109.70644 * 65.21976 * 12 11 10 31 31 H 1.08004 * 120.49793 * 0.02562 * 17 16 14 32 32 H 1.07998 * 119.54810 * 180.25294 * 18 17 16 33 33 H 1.08004 * 119.54649 * 179.97438 * 20 19 18 34 34 H 1.08002 * 120.49761 * 179.97438 * 21 20 19 35 35 H 1.09001 * 109.59015 * 65.92390 * 22 13 12 36 36 H 1.09000 * 109.58492 * 186.35139 * 22 13 12 37 37 H 1.09001 * 109.49614 * 298.57076 * 23 10 9 38 38 H 1.08998 * 109.49717 * 58.63017 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.1808 -4.7525 0.6083 12 6 1.9623 -6.0697 0.6373 13 7 2.4408 -6.3656 -0.7201 14 6 2.1724 -7.5526 -1.2992 15 8 2.6310 -7.8119 -2.3942 16 6 1.3184 -8.5414 -0.6008 17 6 1.5691 -8.8957 0.7283 18 6 0.7446 -9.8186 1.3424 19 7 -0.2592 -10.3693 0.6896 20 6 -0.5272 -10.0674 -0.5652 21 6 0.2426 -9.1502 -1.2541 22 6 3.2227 -5.3453 -1.4315 23 6 2.4223 -4.0340 -1.4394 24 1 -0.4850 0.8400 0.0004 25 1 0.3555 -2.3880 -0.0005 26 1 2.9688 -3.5508 0.5877 27 1 0.2814 -4.8764 0.0052 28 1 0.9019 -4.4726 1.6242 29 1 1.3104 -6.8740 0.9783 30 1 2.8129 -5.9776 1.3126 31 1 2.3925 -8.4516 1.2679 32 1 0.9278 -10.0956 2.3700 33 1 -1.3599 -10.5436 -1.0615 34 1 0.0175 -8.9079 -2.2823 35 1 4.1741 -5.1927 -0.9219 36 1 3.4026 -5.6713 -2.4559 37 1 1.5111 -4.1646 -2.0232 38 1 3.0270 -3.2421 -1.8812 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989861610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:29 Heat of formation + Delta-G solvation = 18.901460 kcal Electronic energy + Delta-G solvation = -20938.837304 eV Core-core repulsion = 17781.642821 eV Total energy + Delta-G solvation = -3157.194483 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.95662 -39.43112 -37.45140 -34.65008 -33.14971 -31.97074 -31.58705 -30.67858 -29.30820 -25.71349 -24.36293 -23.86516 -22.80285 -22.56863 -20.63982 -19.35330 -17.84599 -17.11425 -16.77608 -16.32824 -15.97428 -15.16936 -15.03800 -14.86651 -14.12455 -13.99672 -13.88291 -13.72493 -13.61998 -13.26892 -13.05604 -12.48384 -12.16357 -11.91802 -11.57725 -11.03279 -10.93726 -10.86381 -10.51057 -10.43589 -10.31631 -10.09433 -9.94325 -9.75191 -9.57737 -9.38788 -8.95181 -8.65138 -7.03269 -5.82076 -3.11714 0.62235 0.79992 2.52684 2.89194 3.40276 3.45028 3.45907 3.52053 4.12633 4.16704 4.53377 4.54897 4.65837 4.78092 4.91972 5.14898 5.20907 5.26543 5.35609 5.43340 5.45270 5.53251 5.56568 5.70409 5.78870 5.82416 5.89238 6.12259 6.19942 6.30315 6.35756 6.46792 6.49639 6.82933 6.97321 7.30559 7.62745 7.63725 7.98710 8.36026 9.47324 10.03806 10.38460 11.40358 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032159 B = 0.003796 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.463247 B = 7375.085768 C = 7741.045483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.140 4.140 12 C 0.099 3.901 13 N -0.594 5.594 14 C 0.556 3.444 15 O -0.536 6.536 16 C -0.072 4.072 17 C -0.147 4.147 18 C 0.097 3.903 19 N -0.476 5.476 20 C 0.100 3.900 21 C -0.126 4.126 22 C 0.112 3.888 23 C -0.150 4.150 24 H 0.256 0.744 25 H 0.384 0.616 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.143 0.857 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.218 -18.651 2.101 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.068 3.932 11 C -0.179 4.179 12 C -0.024 4.024 13 N -0.326 5.326 14 C 0.343 3.657 15 O -0.413 6.413 16 C -0.084 4.084 17 C -0.167 4.167 18 C -0.059 4.059 19 N -0.185 5.185 20 C -0.057 4.057 21 C -0.147 4.147 22 C -0.010 4.010 23 C -0.191 4.191 24 H 0.066 0.934 25 H 0.217 0.783 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.161 0.839 32 H 0.179 0.821 33 H 0.180 0.820 34 H 0.160 0.840 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.061 -19.187 1.962 19.397 hybrid contribution 0.648 1.706 -0.460 1.882 sum 2.708 -17.481 1.502 17.753 Atomic orbital electron populations 1.69651 1.05147 1.25868 1.57381 1.24749 0.95497 0.97726 1.02801 0.86276 0.78546 0.83532 0.77869 1.21232 1.21679 1.21233 1.19187 0.90960 0.84078 1.43148 0.91188 1.42415 1.05780 0.99673 1.88554 1.20170 0.94391 0.86046 0.92551 1.22211 0.99212 0.94005 1.02435 1.22131 0.99014 0.98745 0.82473 1.48114 1.53052 1.14455 1.17004 1.18267 0.80461 0.81754 0.85187 1.90786 1.52643 1.77570 1.20338 1.20362 0.96339 0.97161 0.94506 1.22393 1.01384 0.98941 0.93970 1.22763 0.90420 0.92549 1.00188 1.67564 1.17362 1.24243 1.09322 1.22782 0.98334 0.94373 0.90236 1.22230 0.94430 0.96447 1.01557 1.21883 0.93780 0.87598 0.97748 1.22762 1.00123 0.94699 1.01518 0.93403 0.78264 0.93319 0.91758 0.90307 0.89530 0.90778 0.83889 0.82060 0.82026 0.83961 0.91354 0.89501 0.92206 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -17.40 5.12 -53.38 -0.27 -17.67 16 10 C 0.18 3.29 2.73 -67.89 -0.19 3.10 16 11 C -0.14 -2.08 5.55 -26.61 -0.15 -2.23 16 12 C 0.10 1.16 5.41 -3.71 -0.02 1.14 16 13 N -0.59 -8.03 2.97 -173.50 -0.51 -8.54 16 14 C 0.56 7.95 7.31 -12.19 -0.09 7.86 16 15 O -0.54 -9.36 16.48 5.35 0.09 -9.27 16 16 C -0.07 -0.85 5.04 -104.65 -0.53 -1.37 16 17 C -0.15 -1.36 7.48 -39.02 -0.29 -1.66 16 18 C 0.10 0.86 11.17 -17.60 -0.20 0.67 16 19 N -0.48 -4.98 10.33 -13.31 -0.14 -5.12 16 20 C 0.10 0.95 11.17 -17.59 -0.20 0.75 16 21 C -0.13 -1.34 9.86 -39.03 -0.38 -1.73 16 22 C 0.11 1.61 6.45 -3.49 -0.02 1.59 16 23 C -0.15 -2.57 5.67 -26.39 -0.15 -2.72 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.38 9.91 7.80 -40.82 -0.32 9.59 16 26 H 0.05 0.90 8.08 -51.93 -0.42 0.49 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.09 0.87 4.52 -51.93 -0.23 0.64 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.14 1.06 7.07 -52.48 -0.37 0.68 16 32 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.31 7.02 -51.93 -0.36 0.94 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 315.77 15.07 4.76 4.76 Total: -1.00 -32.40 315.77 -7.89 -40.29 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.06 Total: 7.25 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -2.46 Total: -1.68 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -0.20 Total: -58.26 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.40 -7.89 -40.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989861610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.194 kcal (2) G-P(sol) polarization free energy of solvation -32.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds