Wall clock time and date at job start Mon Mar 30 2020 02:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00104 * 2 1 4 4 H 1.48497 * 109.47206 * 239.99986 * 3 2 1 5 5 H 1.48506 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47085 * 119.99874 * 3 2 1 7 7 C 1.38817 * 119.99576 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99298 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00084 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99469 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.45428 * 155.00323 * 10 9 7 12 12 C 1.53188 * 109.31078 * 181.38754 * 11 10 9 13 13 N 1.46933 * 108.77511 * 305.36092 * 12 11 10 14 14 C 1.34773 * 120.63030 * 233.58518 * 13 12 11 15 15 O 1.21517 * 119.99635 * 183.76027 * 14 13 12 16 16 C 1.48148 * 120.00286 * 3.75939 * 14 13 12 17 17 C 1.39816 * 120.92135 * 310.04003 * 16 14 13 18 18 C 1.38151 * 118.99928 * 179.77448 * 17 16 14 19 19 N 1.31803 * 120.89843 * 0.51732 * 18 17 16 20 20 C 1.31817 * 122.04614 * 359.73819 * 19 18 17 21 21 C 1.38144 * 120.89709 * 359.97438 * 20 19 18 22 22 C 1.46927 * 118.73428 * 53.86499 * 13 12 11 23 23 C 1.53038 * 109.46232 * 275.06777 * 10 9 7 24 24 H 0.96998 * 120.00150 * 359.97438 * 1 2 3 25 25 H 0.96999 * 120.00120 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.46115 * 35.03603 * 10 9 7 27 27 H 1.08996 * 109.50287 * 61.43629 * 11 10 9 28 28 H 1.09001 * 109.52748 * 301.35231 * 11 10 9 29 29 H 1.09005 * 109.59018 * 185.58033 * 12 11 10 30 30 H 1.09002 * 109.70644 * 65.21976 * 12 11 10 31 31 H 1.08004 * 120.49793 * 0.02562 * 17 16 14 32 32 H 1.07998 * 119.54810 * 180.25294 * 18 17 16 33 33 H 1.08004 * 119.54649 * 179.97438 * 20 19 18 34 34 H 1.08002 * 120.49761 * 179.97438 * 21 20 19 35 35 H 1.09001 * 109.59015 * 65.92390 * 22 13 12 36 36 H 1.09000 * 109.58492 * 186.35139 * 22 13 12 37 37 H 1.09001 * 109.49614 * 298.57076 * 23 10 9 38 38 H 1.08998 * 109.49717 * 58.63017 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.1808 -4.7525 0.6083 12 6 1.9623 -6.0697 0.6373 13 7 2.4408 -6.3656 -0.7201 14 6 2.1724 -7.5526 -1.2992 15 8 2.6310 -7.8119 -2.3942 16 6 1.3184 -8.5414 -0.6008 17 6 1.5691 -8.8957 0.7283 18 6 0.7446 -9.8186 1.3424 19 7 -0.2592 -10.3693 0.6896 20 6 -0.5272 -10.0674 -0.5652 21 6 0.2426 -9.1502 -1.2541 22 6 3.2227 -5.3453 -1.4315 23 6 2.4223 -4.0340 -1.4394 24 1 -0.4850 0.8400 0.0004 25 1 0.3555 -2.3880 -0.0005 26 1 2.9688 -3.5508 0.5877 27 1 0.2814 -4.8764 0.0052 28 1 0.9019 -4.4726 1.6242 29 1 1.3104 -6.8740 0.9783 30 1 2.8129 -5.9776 1.3126 31 1 2.3925 -8.4516 1.2679 32 1 0.9278 -10.0956 2.3700 33 1 -1.3599 -10.5436 -1.0615 34 1 0.0175 -8.9079 -2.2823 35 1 4.1741 -5.1927 -0.9219 36 1 3.4026 -5.6713 -2.4559 37 1 1.5111 -4.1646 -2.0232 38 1 3.0270 -3.2421 -1.8812 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989861610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:29 Heat of formation + Delta-G solvation = -2.744160 kcal Electronic energy + Delta-G solvation = -20939.775929 eV Core-core repulsion = 17781.642821 eV Total energy + Delta-G solvation = -3158.133108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.89430 -40.38834 -38.76884 -36.24335 -34.27722 -33.50533 -32.37178 -31.80517 -31.00088 -27.02796 -25.75579 -24.72507 -24.00642 -23.90520 -21.87432 -20.55399 -19.23747 -18.67037 -17.75606 -17.22961 -16.84130 -16.69280 -16.15209 -15.99654 -15.50970 -15.40750 -15.06718 -14.81110 -14.70023 -14.51495 -14.33439 -13.86973 -13.39423 -13.13019 -12.81145 -12.75637 -12.59221 -12.26314 -12.22528 -11.98504 -11.70168 -11.56644 -11.36131 -10.92740 -10.83955 -10.43265 -10.12718 -9.81281 -9.01935 -7.93983 -5.22704 -0.19639 0.09656 1.45674 1.48222 1.50373 1.56319 1.85334 2.56480 2.77687 3.19417 3.39322 3.53375 3.76802 3.81201 3.87671 3.94952 4.04970 4.09738 4.12469 4.31123 4.35766 4.53734 4.56311 4.72341 4.76301 4.79675 4.81584 4.81910 4.93013 5.03069 5.09870 5.26020 5.45670 5.51867 5.54102 5.62083 6.22047 6.27963 6.89070 6.92278 7.34151 8.09891 8.32293 9.29342 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032159 B = 0.003796 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.463247 B = 7375.085768 C = 7741.045483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.075 4.075 3 Si 0.970 3.030 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.276 1.276 7 C -0.239 4.239 8 H 0.078 0.922 9 N -0.738 5.738 10 C 0.173 3.827 11 C -0.131 4.131 12 C 0.106 3.894 13 N -0.594 5.594 14 C 0.556 3.444 15 O -0.575 6.575 16 C -0.092 4.092 17 C -0.141 4.141 18 C 0.100 3.900 19 N -0.494 5.494 20 C 0.100 3.900 21 C -0.139 4.139 22 C 0.121 3.879 23 C -0.138 4.138 24 H 0.250 0.750 25 H 0.371 0.629 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.167 0.833 32 H 0.195 0.805 33 H 0.186 0.814 34 H 0.140 0.860 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.038 0.962 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.322 -20.107 3.701 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.268 4.268 3 Si 0.799 3.201 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.202 1.202 7 C -0.371 4.371 8 H 0.096 0.904 9 N -0.377 5.377 10 C 0.064 3.936 11 C -0.170 4.170 12 C -0.015 4.015 13 N -0.325 5.325 14 C 0.345 3.655 15 O -0.456 6.456 16 C -0.103 4.103 17 C -0.161 4.161 18 C -0.056 4.056 19 N -0.203 5.203 20 C -0.056 4.056 21 C -0.159 4.159 22 C -0.002 4.002 23 C -0.179 4.179 24 H 0.059 0.941 25 H 0.202 0.798 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.185 0.815 32 H 0.211 0.789 33 H 0.203 0.797 34 H 0.158 0.842 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.200 -20.682 3.579 21.232 hybrid contribution 0.309 2.070 -0.958 2.302 sum 3.508 -18.612 2.621 19.120 Atomic orbital electron populations 1.69810 1.06650 1.26022 1.59696 1.25529 0.96280 1.01021 1.03923 0.85265 0.77205 0.79420 0.78202 1.20627 1.22511 1.20157 1.19600 0.91492 0.85167 1.40794 0.90392 1.42653 1.05405 1.01039 1.88588 1.20439 0.94765 0.84986 0.93365 1.22091 0.98421 0.94524 1.01947 1.22252 1.00077 0.97335 0.81885 1.48164 1.52693 1.14057 1.17585 1.18671 0.80002 0.82128 0.84686 1.90761 1.54185 1.78474 1.22149 1.20299 0.96758 0.97514 0.95757 1.22625 1.01872 0.98764 0.92833 1.23319 0.89375 0.91549 1.01373 1.67643 1.18176 1.24798 1.09679 1.23134 0.98585 0.93794 0.90096 1.22340 0.94786 0.97027 1.01770 1.21714 0.94193 0.86175 0.98078 1.22541 0.99324 0.95967 1.00113 0.94145 0.79773 0.92699 0.93199 0.89826 0.87279 0.87926 0.81550 0.78858 0.79691 0.84165 0.89116 0.90319 0.94302 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.75 13.06 21.65 0.28 -58.47 16 2 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.97 45.29 29.55 68.60 2.03 47.31 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.24 -12.79 9.93 84.04 0.83 -11.96 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -35.70 5.12 -322.80 -1.65 -37.35 16 10 C 0.17 6.22 2.73 45.02 0.12 6.35 16 11 C -0.13 -3.71 5.55 30.67 0.17 -3.54 16 12 C 0.11 2.16 5.41 86.36 0.47 2.63 16 13 N -0.59 -14.98 2.97 -821.12 -2.44 -17.42 16 14 C 0.56 15.28 7.31 86.88 0.63 15.91 16 15 O -0.58 -20.08 16.48 -3.77 -0.06 -20.14 16 16 C -0.09 -2.00 5.04 -19.88 -0.10 -2.10 16 17 C -0.14 -2.16 7.48 22.63 0.17 -1.99 16 18 C 0.10 1.43 11.17 84.68 0.95 2.38 16 19 N -0.49 -9.04 10.33 -196.01 -2.03 -11.07 16 20 C 0.10 1.72 11.17 84.67 0.95 2.67 16 21 C -0.14 -2.81 9.86 22.63 0.22 -2.58 16 22 C 0.12 3.35 6.45 86.51 0.56 3.90 16 23 C -0.14 -4.74 5.67 30.82 0.17 -4.57 16 24 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 25 H 0.37 19.59 7.80 -92.71 -0.72 18.87 16 26 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.11 1.80 4.52 -2.38 -0.01 1.79 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.17 1.71 7.07 -2.91 -0.02 1.69 16 32 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.19 2.09 8.06 -2.91 -0.02 2.06 16 34 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 35 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.08 2.35 7.02 -2.39 -0.02 2.33 16 37 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -70.97 315.77 2.10 -68.87 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.35 Total: 24.94 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 5.61 Total: 3.32 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -5.83 Total: -124.31 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.06 Total: -20.14 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -70.97 2.10 -68.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989861610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.128 kcal (2) G-P(sol) polarization free energy of solvation -70.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds