Wall clock time and date at job start Mon Mar 30 2020 01:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47082 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47325 * 300.00155 * 3 2 1 6 6 H 1.48502 * 109.47135 * 60.00447 * 3 2 1 7 7 C 1.38810 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00068 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99985 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99748 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.50083 * 324.99334 * 10 9 7 12 12 C 1.53042 * 109.52014 * 204.91830 * 10 9 7 13 13 C 1.53041 * 109.53822 * 178.66754 * 12 10 9 14 14 C 1.53189 * 109.31283 * 61.36244 * 13 12 10 15 15 N 1.46921 * 108.77719 * 305.36697 * 14 13 12 16 16 C 1.34779 * 120.63393 * 233.58547 * 15 14 13 17 17 O 1.21549 * 120.00511 * 174.19981 * 16 15 14 18 18 C 1.47840 * 119.99685 * 354.20206 * 16 15 14 19 19 C 1.40020 * 120.56059 * 139.44876 * 18 16 15 20 20 C 1.38362 * 118.28790 * 180.02562 * 19 18 16 21 21 C 1.38346 * 119.30749 * 359.97438 * 20 19 18 22 22 N 1.31937 * 121.07587 * 359.97438 * 21 20 19 23 23 C 1.31695 * 121.87958 * 359.74572 * 22 21 20 24 24 C 1.46927 * 118.73911 * 53.60663 * 15 14 13 25 25 H 0.97008 * 119.99965 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00016 * 359.97438 * 9 7 2 27 27 H 1.09000 * 109.46097 * 298.68275 * 12 10 9 28 28 H 1.09000 * 109.46325 * 58.64589 * 12 10 9 29 29 H 1.09003 * 109.49515 * 301.41110 * 13 12 10 30 30 H 1.08998 * 109.52605 * 181.33080 * 13 12 10 31 31 H 1.09003 * 109.58645 * 185.57614 * 14 13 12 32 32 H 1.09005 * 109.70275 * 65.22722 * 14 13 12 33 33 H 1.07998 * 120.86142 * 0.02562 * 19 18 16 34 34 H 1.08001 * 120.34539 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.46592 * 179.97438 * 21 20 19 36 36 H 1.07995 * 119.71413 * 180.26327 * 23 22 21 37 37 H 1.09005 * 109.58661 * 186.60117 * 24 15 14 38 38 H 1.09002 * 109.58237 * 66.18263 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9687 -3.5511 -0.5900 12 6 1.1807 -4.7538 -0.6083 13 6 1.9575 -6.0720 -0.6390 14 6 2.3196 -6.4801 0.7925 15 7 3.0390 -5.3706 1.4329 16 6 4.2426 -5.5718 2.0051 17 8 4.8752 -4.6285 2.4380 18 6 4.7935 -6.9400 2.1062 19 6 6.1527 -7.1795 1.8702 20 6 6.6179 -8.4781 1.9772 21 6 5.7342 -9.4887 2.3113 22 7 4.4582 -9.2332 2.5291 23 6 3.9689 -8.0134 2.4448 24 6 2.4212 -4.0375 1.4381 25 1 -0.4850 0.8401 0.0004 26 1 0.3554 -2.3881 0.0002 27 1 0.2817 -4.8761 -0.0042 28 1 0.9004 -4.4737 -1.6237 29 1 2.8692 -5.9435 -1.2224 30 1 1.3411 -6.8476 -1.0934 31 1 2.9567 -7.3643 0.7703 32 1 1.4109 -6.6986 1.3534 33 1 6.8208 -6.3714 1.6113 34 1 7.6601 -8.7005 1.8018 35 1 6.0945 -10.5034 2.3951 36 1 2.9194 -7.8434 2.6345 37 1 3.1253 -3.3100 1.8420 38 1 1.5195 -4.0552 2.0503 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998370804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:04 Heat of formation + Delta-G solvation = 18.878604 kcal Electronic energy + Delta-G solvation = -21064.860125 eV Core-core repulsion = 17907.664651 eV Total energy + Delta-G solvation = -3157.195474 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.90222 -39.29402 -37.31369 -34.59403 -32.77949 -32.54561 -31.63434 -31.05948 -28.26606 -25.89471 -24.24480 -23.79364 -23.54186 -21.91507 -20.52779 -19.24311 -17.53214 -17.30800 -17.07737 -16.50773 -15.80852 -15.20240 -14.65309 -14.46945 -14.31165 -13.94330 -13.83111 -13.50808 -13.41345 -13.36098 -12.79842 -12.47255 -12.35806 -12.30001 -11.36406 -11.09077 -10.86868 -10.70741 -10.61907 -10.27080 -10.18449 -10.15288 -9.84990 -9.72644 -9.57560 -9.28947 -9.10487 -8.41489 -7.02178 -5.80424 -3.10399 0.52157 0.93806 2.74604 3.06588 3.43572 3.50109 3.52393 3.55742 4.06626 4.40651 4.54280 4.57447 4.61694 4.75611 4.86798 5.04565 5.13419 5.21309 5.33935 5.45544 5.49594 5.58630 5.75647 5.76158 5.79444 5.90952 5.98890 6.13438 6.18079 6.28113 6.31429 6.44870 6.67175 6.79324 6.96338 7.53167 7.57974 7.70973 8.23200 8.37797 9.49737 10.03238 10.38583 11.41839 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.030177 B = 0.004167 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.640391 B = 6718.536220 C = 7340.571561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.129 4.129 14 C 0.098 3.902 15 N -0.598 5.598 16 C 0.556 3.444 17 O -0.532 6.532 18 C -0.173 4.173 19 C -0.026 4.026 20 C -0.177 4.177 21 C 0.111 3.889 22 N -0.487 5.487 23 C 0.129 3.871 24 C 0.092 3.908 25 H 0.255 0.745 26 H 0.386 0.614 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.092 0.908 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.172 -20.507 1.666 22.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.168 4.168 14 C -0.025 4.025 15 N -0.330 5.330 16 C 0.342 3.658 17 O -0.409 6.409 18 C -0.178 4.178 19 C -0.052 4.052 20 C -0.197 4.197 21 C -0.045 4.045 22 N -0.196 5.196 23 C -0.029 4.029 24 C -0.032 4.032 25 H 0.065 0.935 26 H 0.220 0.780 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.177 0.823 36 H 0.181 0.819 37 H 0.111 0.889 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.047 -20.500 2.093 22.122 hybrid contribution 0.664 1.617 -0.173 1.757 sum 8.711 -18.883 1.920 20.884 Atomic orbital electron populations 1.69672 1.05128 1.25682 1.57489 1.24746 0.95516 0.97765 1.02610 0.86120 0.78971 0.83972 0.77186 1.20422 1.21829 1.21759 1.19324 0.91151 0.83955 1.42981 0.90966 1.42386 1.05819 0.99569 1.88083 1.20485 0.94962 0.86496 0.92334 0.93098 1.21833 0.98693 0.94014 1.01935 1.21877 1.00964 0.98312 0.95633 1.22052 0.96931 0.89288 0.94234 1.48210 1.18393 1.11469 1.54972 1.18130 0.81257 0.87686 0.78688 1.90810 1.58651 1.42833 1.48607 1.21106 0.95768 0.95425 1.05525 1.21708 0.93840 0.97433 0.92261 1.22140 1.01829 0.93350 1.02405 1.22964 0.88733 0.99866 0.92971 1.67742 1.15255 1.22337 1.14242 1.23143 1.00024 0.86890 0.92827 1.22867 0.97819 0.81174 1.01365 0.93492 0.78034 0.91915 0.91310 0.91618 0.90836 0.89999 0.90949 0.83895 0.84089 0.82336 0.81927 0.88950 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.75 9.93 -15.06 -0.15 -6.90 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.72 -17.68 5.13 -53.31 -0.27 -17.95 16 10 C 0.17 3.30 2.92 -67.81 -0.20 3.10 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -1.94 5.36 -26.69 -0.14 -2.09 16 13 C -0.13 -1.53 6.08 -26.61 -0.16 -1.69 16 14 C 0.10 1.12 4.92 -3.71 -0.02 1.10 16 15 N -0.60 -9.06 2.97 -173.89 -0.52 -9.58 16 16 C 0.56 8.92 7.34 -12.33 -0.09 8.83 16 17 O -0.53 -10.71 16.37 5.32 0.09 -10.62 16 18 C -0.17 -2.17 5.11 -104.82 -0.54 -2.71 16 19 C -0.03 -0.28 9.81 -38.87 -0.38 -0.66 16 20 C -0.18 -1.44 10.10 -39.50 -0.40 -1.84 16 21 C 0.11 0.93 11.17 -17.47 -0.20 0.74 16 22 N -0.49 -5.21 10.35 -12.91 -0.13 -5.34 16 23 C 0.13 1.42 8.58 -17.13 -0.15 1.27 16 24 C 0.09 1.71 6.02 -3.71 -0.02 1.69 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.39 9.96 7.80 -40.82 -0.32 9.64 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.82 4.78 -51.93 -0.25 0.57 16 32 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 33 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.16 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.16 1.57 6.65 -52.49 -0.35 1.22 16 37 H 0.09 2.02 7.00 -51.93 -0.36 1.66 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 315.04 15.07 4.75 4.75 Total: -1.00 -32.96 315.04 -7.97 -40.93 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.05 Total: 6.93 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -2.54 Total: 0.45 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.20 Total: -60.03 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.96 -7.97 -40.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998370804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.810 kcal (2) G-P(sol) polarization free energy of solvation -32.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds