Wall clock time and date at job start Mon Mar 30 2020 01:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47082 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47325 * 300.00155 * 3 2 1 6 6 H 1.48502 * 109.47135 * 60.00447 * 3 2 1 7 7 C 1.38810 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00068 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99985 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99748 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.50083 * 324.99334 * 10 9 7 12 12 C 1.53042 * 109.52014 * 204.91830 * 10 9 7 13 13 C 1.53041 * 109.53822 * 178.66754 * 12 10 9 14 14 C 1.53189 * 109.31283 * 61.36244 * 13 12 10 15 15 N 1.46921 * 108.77719 * 305.36697 * 14 13 12 16 16 C 1.34779 * 120.63393 * 233.58547 * 15 14 13 17 17 O 1.21549 * 120.00511 * 174.19981 * 16 15 14 18 18 C 1.47840 * 119.99685 * 354.20206 * 16 15 14 19 19 C 1.40020 * 120.56059 * 139.44876 * 18 16 15 20 20 C 1.38362 * 118.28790 * 180.02562 * 19 18 16 21 21 C 1.38346 * 119.30749 * 359.97438 * 20 19 18 22 22 N 1.31937 * 121.07587 * 359.97438 * 21 20 19 23 23 C 1.31695 * 121.87958 * 359.74572 * 22 21 20 24 24 C 1.46927 * 118.73911 * 53.60663 * 15 14 13 25 25 H 0.97008 * 119.99965 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00016 * 359.97438 * 9 7 2 27 27 H 1.09000 * 109.46097 * 298.68275 * 12 10 9 28 28 H 1.09000 * 109.46325 * 58.64589 * 12 10 9 29 29 H 1.09003 * 109.49515 * 301.41110 * 13 12 10 30 30 H 1.08998 * 109.52605 * 181.33080 * 13 12 10 31 31 H 1.09003 * 109.58645 * 185.57614 * 14 13 12 32 32 H 1.09005 * 109.70275 * 65.22722 * 14 13 12 33 33 H 1.07998 * 120.86142 * 0.02562 * 19 18 16 34 34 H 1.08001 * 120.34539 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.46592 * 179.97438 * 21 20 19 36 36 H 1.07995 * 119.71413 * 180.26327 * 23 22 21 37 37 H 1.09005 * 109.58661 * 186.60117 * 24 15 14 38 38 H 1.09002 * 109.58237 * 66.18263 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9687 -3.5511 -0.5900 12 6 1.1807 -4.7538 -0.6083 13 6 1.9575 -6.0720 -0.6390 14 6 2.3196 -6.4801 0.7925 15 7 3.0390 -5.3706 1.4329 16 6 4.2426 -5.5718 2.0051 17 8 4.8752 -4.6285 2.4380 18 6 4.7935 -6.9400 2.1062 19 6 6.1527 -7.1795 1.8702 20 6 6.6179 -8.4781 1.9772 21 6 5.7342 -9.4887 2.3113 22 7 4.4582 -9.2332 2.5291 23 6 3.9689 -8.0134 2.4448 24 6 2.4212 -4.0375 1.4381 25 1 -0.4850 0.8401 0.0004 26 1 0.3554 -2.3881 0.0002 27 1 0.2817 -4.8761 -0.0042 28 1 0.9004 -4.4737 -1.6237 29 1 2.8692 -5.9435 -1.2224 30 1 1.3411 -6.8476 -1.0934 31 1 2.9567 -7.3643 0.7703 32 1 1.4109 -6.6986 1.3534 33 1 6.8208 -6.3714 1.6113 34 1 7.6601 -8.7005 1.8018 35 1 6.0945 -10.5034 2.3951 36 1 2.9194 -7.8434 2.6345 37 1 3.1253 -3.3100 1.8420 38 1 1.5195 -4.0552 2.0503 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998370804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:03 Heat of formation + Delta-G solvation = -4.062188 kcal Electronic energy + Delta-G solvation = -21065.854912 eV Core-core repulsion = 17907.664651 eV Total energy + Delta-G solvation = -3158.190262 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.90521 -40.35319 -38.70216 -36.30264 -34.14363 -33.53704 -32.81097 -32.43598 -29.91999 -27.07404 -25.96246 -24.74641 -24.57356 -23.27053 -21.88060 -20.48750 -19.17520 -18.63158 -18.03901 -17.43617 -16.99133 -16.83280 -16.07269 -15.65598 -15.54408 -15.35696 -15.10685 -14.80986 -14.72797 -14.15285 -14.07189 -13.96835 -13.68263 -13.22488 -13.06701 -12.92184 -12.52104 -12.19044 -12.06672 -11.92737 -11.75244 -11.38233 -11.33483 -11.09870 -10.97452 -10.48342 -10.12778 -9.81066 -9.04388 -8.00444 -5.29752 -0.29698 0.17840 1.43160 1.44500 1.54383 1.58085 1.87835 2.52056 2.75181 3.24623 3.33099 3.52264 3.69872 3.80511 3.90092 3.96491 4.01311 4.05933 4.15857 4.29203 4.34975 4.45142 4.54992 4.66557 4.70177 4.83476 4.85994 4.96801 5.01386 5.08380 5.13506 5.34984 5.40903 5.42035 5.52481 5.58939 6.22455 6.31661 6.82759 6.99367 7.29343 8.00856 8.26631 9.22325 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.030177 B = 0.004167 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.640391 B = 6718.536220 C = 7340.571561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.065 0.935 9 N -0.729 5.729 10 C 0.167 3.833 11 H 0.029 0.971 12 C -0.118 4.118 13 C -0.120 4.120 14 C 0.095 3.905 15 N -0.595 5.595 16 C 0.553 3.447 17 O -0.587 6.587 18 C -0.193 4.193 19 C -0.039 4.039 20 C -0.163 4.163 21 C 0.118 3.882 22 N -0.501 5.501 23 C 0.132 3.868 24 C 0.107 3.893 25 H 0.253 0.747 26 H 0.378 0.622 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.137 0.863 34 H 0.177 0.823 35 H 0.197 0.803 36 H 0.174 0.826 37 H 0.050 0.950 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.955 -23.723 1.440 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.369 5.369 10 C 0.057 3.943 11 H 0.048 0.952 12 C -0.156 4.156 13 C -0.159 4.159 14 C -0.026 4.026 15 N -0.327 5.327 16 C 0.342 3.658 17 O -0.468 6.468 18 C -0.198 4.198 19 C -0.066 4.066 20 C -0.183 4.183 21 C -0.038 4.038 22 N -0.210 5.210 23 C -0.026 4.026 24 C -0.019 4.019 25 H 0.062 0.938 26 H 0.211 0.789 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.155 0.845 34 H 0.194 0.806 35 H 0.214 0.786 36 H 0.191 0.809 37 H 0.069 0.931 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.840 -23.786 1.851 25.443 hybrid contribution 0.515 2.473 -0.095 2.528 sum 9.355 -21.313 1.757 23.341 Atomic orbital electron populations 1.69794 1.06296 1.26140 1.59048 1.25467 0.96384 1.00745 1.03295 0.85168 0.78008 0.80181 0.76987 1.19866 1.21417 1.21771 1.19548 0.91032 0.85486 1.41721 0.91749 1.42506 1.05560 1.00540 1.88291 1.20641 0.94637 0.86162 0.92820 0.95243 1.21739 0.98535 0.94190 1.01133 1.21867 1.00796 0.97109 0.96121 1.22378 0.97939 0.88431 0.93858 1.48209 1.18510 1.10954 1.55005 1.18748 0.80795 0.88803 0.77482 1.90771 1.60103 1.44961 1.50947 1.20826 0.96863 0.93476 1.08619 1.21869 0.93158 0.98864 0.92661 1.22484 1.03538 0.91686 1.00563 1.23655 0.87887 1.01597 0.90657 1.67842 1.16589 1.21688 1.14837 1.23226 1.00356 0.86566 0.92412 1.22302 0.96843 0.82593 1.00131 0.93781 0.78888 0.91017 0.91914 0.92229 0.86957 0.87751 0.88557 0.84503 0.80584 0.78608 0.80901 0.93116 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.89 13.06 21.65 0.28 -58.60 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.97 47.52 29.55 68.60 2.03 49.55 16 4 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 7 C -0.25 -14.14 9.93 84.03 0.83 -13.31 16 8 H 0.06 3.72 7.83 -2.91 -0.02 3.70 16 9 N -0.73 -37.15 5.13 -322.57 -1.65 -38.80 16 10 C 0.17 6.75 2.92 45.07 0.13 6.88 16 11 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 12 C -0.12 -3.51 5.36 30.62 0.16 -3.35 16 13 C -0.12 -2.55 6.08 30.67 0.19 -2.36 16 14 C 0.10 1.94 4.92 86.36 0.43 2.37 16 15 N -0.60 -18.08 2.97 -822.33 -2.44 -20.53 16 16 C 0.55 18.16 7.34 86.78 0.64 18.80 16 17 O -0.59 -25.04 16.37 -3.87 -0.06 -25.11 16 18 C -0.19 -4.65 5.11 -19.99 -0.10 -4.75 16 19 C -0.04 -0.79 9.81 22.73 0.22 -0.57 16 20 C -0.16 -2.07 10.10 22.32 0.23 -1.85 16 21 C 0.12 1.49 11.17 84.70 0.95 2.43 16 22 N -0.50 -9.00 10.35 -194.76 -2.01 -11.02 16 23 C 0.13 2.60 8.58 85.02 0.73 3.33 16 24 C 0.11 4.13 6.02 86.36 0.52 4.65 16 25 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 26 H 0.38 20.15 7.80 -92.71 -0.72 19.42 16 27 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.10 1.76 4.78 -2.39 -0.01 1.74 16 32 H 0.10 1.58 8.13 -2.38 -0.02 1.56 16 33 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 34 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.20 0.95 8.06 -2.91 -0.02 0.93 16 36 H 0.17 2.89 6.65 -2.91 -0.02 2.87 16 37 H 0.05 2.38 7.00 -2.38 -0.02 2.36 16 38 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -75.22 315.04 1.87 -73.34 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.35 Total: 22.28 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 5.39 Total: 8.88 kcal Atomic # 7 Polarization: -123.12 SS G_CDS: -5.83 Total: -128.94 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.06 Total: -25.11 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -75.22 1.87 -73.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998370804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.282 kcal (2) G-P(sol) polarization free energy of solvation -75.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds