Wall clock time and date at job start Mon Mar 30 2020 01:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99783 * 2 1 4 4 H 1.48502 * 109.47065 * 240.27601 * 3 2 1 5 5 H 1.48497 * 109.47063 * 0.27693 * 3 2 1 6 6 H 1.48503 * 109.46864 * 120.27780 * 3 2 1 7 7 C 1.38815 * 120.00138 * 180.27932 * 2 1 3 8 8 H 1.08000 * 120.00107 * 179.72344 * 7 2 1 9 9 N 1.36933 * 120.00086 * 359.71955 * 7 2 1 10 10 C 1.46503 * 120.00265 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.49274 * 34.93478 * 10 9 7 12 12 C 1.53034 * 109.49615 * 155.00040 * 10 9 7 13 13 C 1.53046 * 109.53664 * 181.31722 * 12 10 9 14 14 C 1.53194 * 109.31366 * 298.64205 * 13 12 10 15 15 N 1.46923 * 108.77804 * 54.62952 * 14 13 12 16 16 C 1.34777 * 120.63134 * 126.41566 * 15 14 13 17 17 O 1.21546 * 120.00495 * 176.21264 * 16 15 14 18 18 C 1.47848 * 119.99608 * 356.21930 * 16 15 14 19 19 C 1.40021 * 120.55307 * 229.94801 * 18 16 15 20 20 C 1.38357 * 118.28769 * 179.73269 * 19 18 16 21 21 C 1.38359 * 119.30123 * 0.54383 * 20 19 18 22 22 N 1.31935 * 121.07708 * 359.71647 * 21 20 19 23 23 C 1.31694 * 121.87800 * 0.02562 * 22 21 20 24 24 C 1.46924 * 118.74149 * 306.39414 * 15 14 13 25 25 H 0.97001 * 120.00725 * 359.72103 * 1 2 3 26 26 H 0.97002 * 119.99757 * 0.02562 * 9 7 2 27 27 H 1.08991 * 109.46618 * 301.33810 * 12 10 9 28 28 H 1.09006 * 109.46170 * 61.31815 * 12 10 9 29 29 H 1.09005 * 109.49646 * 58.58594 * 13 12 10 30 30 H 1.08996 * 109.50203 * 178.68434 * 13 12 10 31 31 H 1.09003 * 109.58953 * 174.42284 * 14 13 12 32 32 H 1.09011 * 109.58120 * 294.70135 * 14 13 12 33 33 H 1.08003 * 120.86089 * 359.97438 * 19 18 16 34 34 H 1.07995 * 120.35475 * 180.28347 * 20 19 18 35 35 H 1.08001 * 119.46413 * 179.69864 * 21 20 19 36 36 H 1.08000 * 119.71181 * 179.97438 * 23 22 21 37 37 H 1.09000 * 109.58501 * 293.82134 * 24 15 14 38 38 H 1.09000 * 109.58791 * 173.39657 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0988 1.6994 -1.2159 5 1 1.2851 2.7464 0.0068 6 1 3.1089 1.6935 1.2091 7 6 2.0102 -1.2021 -0.0059 8 1 3.0902 -1.2021 -0.0104 9 7 1.3256 -2.3880 -0.0058 10 6 2.0581 -3.6568 -0.0126 11 1 2.9722 -3.5521 0.5719 12 6 1.1840 -4.7544 0.5982 13 6 1.9604 -6.0732 0.6217 14 6 2.3140 -6.4786 -0.8127 15 7 3.0300 -5.3681 -1.4552 16 6 4.2301 -5.5687 -2.0349 17 8 4.7808 -4.6586 -2.6228 18 6 4.8765 -6.8960 -1.9558 19 6 6.2096 -7.0151 -1.5444 20 6 6.7660 -8.2803 -1.4820 21 6 5.9984 -9.3758 -1.8355 22 7 4.7459 -9.2327 -2.2247 23 6 4.1704 -8.0503 -2.2956 24 6 2.4128 -4.0348 -1.4542 25 1 -0.4851 0.8400 0.0041 26 1 0.3556 -2.3881 -0.0021 27 1 0.9100 -4.4763 1.6158 28 1 0.2814 -4.8754 -0.0009 29 1 2.8757 -5.9462 1.1999 30 1 1.3459 -6.8491 1.0781 31 1 2.9508 -7.3631 -0.7961 32 1 1.4006 -6.6963 -1.3665 33 1 6.7875 -6.1422 -1.2790 34 1 7.7900 -8.4111 -1.1647 35 1 6.4316 -10.3642 -1.7924 36 1 3.1429 -7.9737 -2.6192 37 1 1.5074 -4.0508 -2.0610 38 1 3.1148 -3.3068 -1.8607 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998370805.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:07 Heat of formation + Delta-G solvation = 18.432875 kcal Electronic energy + Delta-G solvation = -21075.982725 eV Core-core repulsion = 17918.767922 eV Total energy + Delta-G solvation = -3157.214803 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.88951 -39.29605 -37.31627 -34.57913 -32.79335 -32.51417 -31.65196 -31.06831 -28.27148 -25.88289 -24.24050 -23.79172 -23.56732 -21.91233 -20.53201 -19.21421 -17.53858 -17.30634 -17.09253 -16.52637 -15.86838 -15.17201 -14.66936 -14.43566 -14.30681 -13.94628 -13.88712 -13.46490 -13.44353 -13.36211 -12.74723 -12.50712 -12.36611 -12.27497 -11.37535 -11.08714 -10.84658 -10.71273 -10.62551 -10.29756 -10.22756 -10.14722 -9.87320 -9.72680 -9.58313 -9.26995 -9.09658 -8.41812 -7.03070 -5.80647 -3.10805 0.56035 0.94089 2.70242 3.06824 3.44629 3.48657 3.50280 3.53043 4.07354 4.39606 4.54448 4.57196 4.61411 4.77612 4.87387 5.04744 5.13219 5.22033 5.34495 5.45195 5.50373 5.58575 5.75836 5.76033 5.79836 5.90020 5.99225 6.13136 6.17546 6.28322 6.31298 6.44347 6.66329 6.78430 6.95657 7.52685 7.58555 7.68892 8.22623 8.37477 9.49230 10.02720 10.38086 11.41476 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029379 B = 0.004203 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.829177 B = 6660.005213 C = 7246.223756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.907 3.093 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.129 4.129 14 C 0.097 3.903 15 N -0.596 5.596 16 C 0.556 3.444 17 O -0.532 6.532 18 C -0.169 4.169 19 C -0.029 4.029 20 C -0.175 4.175 21 C 0.109 3.891 22 N -0.486 5.486 23 C 0.127 3.873 24 C 0.092 3.908 25 H 0.257 0.743 26 H 0.386 0.614 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.065 0.935 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.411 -20.068 -0.711 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.168 4.168 14 C -0.026 4.026 15 N -0.329 5.329 16 C 0.342 3.658 17 O -0.409 6.409 18 C -0.174 4.174 19 C -0.055 4.055 20 C -0.195 4.195 21 C -0.047 4.047 22 N -0.194 5.194 23 C -0.031 4.031 24 C -0.032 4.032 25 H 0.066 0.934 26 H 0.220 0.780 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.177 0.823 36 H 0.180 0.820 37 H 0.083 0.917 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.303 -20.123 -1.237 21.803 hybrid contribution 0.613 1.676 0.203 1.796 sum 8.916 -18.447 -1.034 20.514 Atomic orbital electron populations 1.69645 1.05138 1.25950 1.57243 1.24742 0.95504 0.97753 1.02516 0.86266 0.78576 0.83360 0.78003 1.21080 1.21639 1.21188 1.19223 0.91071 0.83987 1.43371 0.91102 1.42367 1.05822 0.99538 1.88070 1.20487 0.94998 0.86526 0.92256 0.93135 1.21833 0.98718 0.94006 1.01920 1.21877 1.00955 0.98301 0.95656 1.22032 0.97044 0.89314 0.94206 1.48233 1.18576 1.11381 1.54688 1.18140 0.81158 0.87071 0.79421 1.90815 1.63794 1.43712 1.42562 1.21085 0.96233 0.95382 1.04724 1.21669 0.92850 0.98425 0.92603 1.22132 1.01926 0.93058 1.02372 1.22951 0.89631 0.99311 0.92831 1.67727 1.11899 1.26043 1.13765 1.23039 0.99675 0.86541 0.93796 1.22880 0.97937 0.81097 1.01297 0.93362 0.78013 0.91309 0.91913 0.91651 0.90874 0.89960 0.90901 0.83996 0.84080 0.82342 0.82043 0.91708 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.25 -6.81 9.93 -15.06 -0.15 -6.96 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.72 -17.64 5.12 -53.31 -0.27 -17.91 16 10 C 0.17 3.29 2.92 -67.81 -0.20 3.09 16 11 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 12 C -0.13 -1.94 5.35 -26.69 -0.14 -2.08 16 13 C -0.13 -1.53 6.08 -26.61 -0.16 -1.69 16 14 C 0.10 1.11 5.38 -3.71 -0.02 1.09 16 15 N -0.60 -9.06 2.97 -173.88 -0.52 -9.58 16 16 C 0.56 8.93 7.27 -12.33 -0.09 8.84 16 17 O -0.53 -10.74 16.48 5.33 0.09 -10.65 16 18 C -0.17 -2.13 5.03 -104.82 -0.53 -2.65 16 19 C -0.03 -0.31 9.89 -38.87 -0.38 -0.70 16 20 C -0.18 -1.43 10.10 -39.49 -0.40 -1.83 16 21 C 0.11 0.92 11.17 -17.46 -0.20 0.73 16 22 N -0.49 -5.20 10.35 -12.91 -0.13 -5.34 16 23 C 0.13 1.40 8.55 -17.14 -0.15 1.26 16 24 C 0.09 1.72 6.01 -3.71 -0.02 1.69 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.39 9.96 7.80 -40.82 -0.32 9.64 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.82 4.53 -51.93 -0.24 0.59 16 32 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 34 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.16 1.54 7.03 -52.49 -0.37 1.17 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.09 2.01 7.03 -51.93 -0.36 1.64 16 LS Contribution 315.66 15.07 4.76 4.76 Total: -1.00 -32.89 315.66 -7.97 -40.86 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.06 Total: 7.03 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -2.53 Total: 0.44 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.20 Total: -59.96 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.89 -7.97 -40.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998370805.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.291 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds