Wall clock time and date at job start Mon Mar 30 2020 01:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99783 * 2 1 4 4 H 1.48502 * 109.47065 * 240.27601 * 3 2 1 5 5 H 1.48497 * 109.47063 * 0.27693 * 3 2 1 6 6 H 1.48503 * 109.46864 * 120.27780 * 3 2 1 7 7 C 1.38815 * 120.00138 * 180.27932 * 2 1 3 8 8 H 1.08000 * 120.00107 * 179.72344 * 7 2 1 9 9 N 1.36933 * 120.00086 * 359.71955 * 7 2 1 10 10 C 1.46503 * 120.00265 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.49274 * 34.93478 * 10 9 7 12 12 C 1.53034 * 109.49615 * 155.00040 * 10 9 7 13 13 C 1.53046 * 109.53664 * 181.31722 * 12 10 9 14 14 C 1.53194 * 109.31366 * 298.64205 * 13 12 10 15 15 N 1.46923 * 108.77804 * 54.62952 * 14 13 12 16 16 C 1.34777 * 120.63134 * 126.41566 * 15 14 13 17 17 O 1.21546 * 120.00495 * 176.21264 * 16 15 14 18 18 C 1.47848 * 119.99608 * 356.21930 * 16 15 14 19 19 C 1.40021 * 120.55307 * 229.94801 * 18 16 15 20 20 C 1.38357 * 118.28769 * 179.73269 * 19 18 16 21 21 C 1.38359 * 119.30123 * 0.54383 * 20 19 18 22 22 N 1.31935 * 121.07708 * 359.71647 * 21 20 19 23 23 C 1.31694 * 121.87800 * 0.02562 * 22 21 20 24 24 C 1.46924 * 118.74149 * 306.39414 * 15 14 13 25 25 H 0.97001 * 120.00725 * 359.72103 * 1 2 3 26 26 H 0.97002 * 119.99757 * 0.02562 * 9 7 2 27 27 H 1.08991 * 109.46618 * 301.33810 * 12 10 9 28 28 H 1.09006 * 109.46170 * 61.31815 * 12 10 9 29 29 H 1.09005 * 109.49646 * 58.58594 * 13 12 10 30 30 H 1.08996 * 109.50203 * 178.68434 * 13 12 10 31 31 H 1.09003 * 109.58953 * 174.42284 * 14 13 12 32 32 H 1.09011 * 109.58120 * 294.70135 * 14 13 12 33 33 H 1.08003 * 120.86089 * 359.97438 * 19 18 16 34 34 H 1.07995 * 120.35475 * 180.28347 * 20 19 18 35 35 H 1.08001 * 119.46413 * 179.69864 * 21 20 19 36 36 H 1.08000 * 119.71181 * 179.97438 * 23 22 21 37 37 H 1.09000 * 109.58501 * 293.82134 * 24 15 14 38 38 H 1.09000 * 109.58791 * 173.39657 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0988 1.6994 -1.2159 5 1 1.2851 2.7464 0.0068 6 1 3.1089 1.6935 1.2091 7 6 2.0102 -1.2021 -0.0059 8 1 3.0902 -1.2021 -0.0104 9 7 1.3256 -2.3880 -0.0058 10 6 2.0581 -3.6568 -0.0126 11 1 2.9722 -3.5521 0.5719 12 6 1.1840 -4.7544 0.5982 13 6 1.9604 -6.0732 0.6217 14 6 2.3140 -6.4786 -0.8127 15 7 3.0300 -5.3681 -1.4552 16 6 4.2301 -5.5687 -2.0349 17 8 4.7808 -4.6586 -2.6228 18 6 4.8765 -6.8960 -1.9558 19 6 6.2096 -7.0151 -1.5444 20 6 6.7660 -8.2803 -1.4820 21 6 5.9984 -9.3758 -1.8355 22 7 4.7459 -9.2327 -2.2247 23 6 4.1704 -8.0503 -2.2956 24 6 2.4128 -4.0348 -1.4542 25 1 -0.4851 0.8400 0.0041 26 1 0.3556 -2.3881 -0.0021 27 1 0.9100 -4.4763 1.6158 28 1 0.2814 -4.8754 -0.0009 29 1 2.8757 -5.9462 1.1999 30 1 1.3459 -6.8491 1.0781 31 1 2.9508 -7.3631 -0.7961 32 1 1.4006 -6.6963 -1.3665 33 1 6.7875 -6.1422 -1.2790 34 1 7.7900 -8.4111 -1.1647 35 1 6.4316 -10.3642 -1.7924 36 1 3.1429 -7.9737 -2.6192 37 1 1.5074 -4.0508 -2.0610 38 1 3.1148 -3.3068 -1.8607 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998370805.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:07 Heat of formation + Delta-G solvation = -4.393133 kcal Electronic energy + Delta-G solvation = -21076.972535 eV Core-core repulsion = 17918.767922 eV Total energy + Delta-G solvation = -3158.204613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.89669 -40.35884 -38.70872 -36.29029 -34.12958 -33.53762 -32.81584 -32.44692 -29.92741 -27.06702 -25.95205 -24.75774 -24.58716 -23.26929 -21.88074 -20.46780 -19.16735 -18.64408 -18.05439 -17.44317 -17.06451 -16.82434 -16.03627 -15.69139 -15.54714 -15.32898 -15.10134 -14.79461 -14.77435 -14.15189 -14.05922 -13.94543 -13.69073 -13.22150 -13.06500 -12.89154 -12.51984 -12.27128 -12.05730 -11.94231 -11.75091 -11.38623 -11.33989 -11.08681 -10.96725 -10.49074 -10.11089 -9.81776 -9.05045 -7.99985 -5.29553 -0.25126 0.17667 1.43520 1.46196 1.50672 1.52850 1.88319 2.52411 2.73474 3.24493 3.33272 3.51815 3.69957 3.79831 3.90578 3.96226 4.00710 4.07789 4.15884 4.28804 4.34628 4.45200 4.55198 4.66847 4.70183 4.82803 4.85699 4.97584 5.00630 5.08374 5.13093 5.34618 5.39904 5.41577 5.51788 5.59054 6.22352 6.30708 6.83018 6.98225 7.29343 8.00989 8.26549 9.22425 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029379 B = 0.004203 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.829177 B = 6660.005213 C = 7246.223756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.065 4.065 3 Si 0.968 3.032 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.729 5.729 10 C 0.168 3.832 11 H 0.032 0.968 12 C -0.118 4.118 13 C -0.120 4.120 14 C 0.094 3.906 15 N -0.594 5.594 16 C 0.554 3.446 17 O -0.586 6.586 18 C -0.189 4.189 19 C -0.043 4.043 20 C -0.161 4.161 21 C 0.116 3.884 22 N -0.499 5.499 23 C 0.130 3.870 24 C 0.107 3.893 25 H 0.254 0.746 26 H 0.378 0.622 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.137 0.863 34 H 0.177 0.823 35 H 0.197 0.803 36 H 0.173 0.827 37 H 0.064 0.936 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.385 -23.179 -0.163 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.258 4.258 3 Si 0.796 3.204 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.369 5.369 10 C 0.058 3.942 11 H 0.050 0.950 12 C -0.156 4.156 13 C -0.158 4.158 14 C -0.027 4.027 15 N -0.325 5.325 16 C 0.342 3.658 17 O -0.467 6.467 18 C -0.194 4.194 19 C -0.069 4.069 20 C -0.180 4.180 21 C -0.040 4.040 22 N -0.208 5.208 23 C -0.028 4.028 24 C -0.019 4.019 25 H 0.062 0.938 26 H 0.211 0.789 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.155 0.845 34 H 0.194 0.806 35 H 0.214 0.786 36 H 0.190 0.810 37 H 0.082 0.918 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.289 -23.303 -0.669 25.095 hybrid contribution 0.408 2.502 0.031 2.536 sum 9.697 -20.801 -0.639 22.959 Atomic orbital electron populations 1.69775 1.06337 1.26323 1.58867 1.25474 0.96366 1.00778 1.03200 0.85308 0.77402 0.79577 0.78069 1.20989 1.21532 1.20297 1.19488 0.91073 0.85488 1.42049 0.91656 1.42496 1.05559 1.00540 1.88278 1.20641 0.94741 0.86152 0.92668 0.95010 1.21740 0.98542 0.94217 1.01115 1.21861 1.00841 0.97064 0.96082 1.22352 0.97989 0.88489 0.93865 1.48232 1.18700 1.10861 1.54708 1.18750 0.80800 0.88041 0.78193 1.90776 1.65094 1.45927 1.44947 1.20807 0.97177 0.93620 1.07771 1.21834 0.92298 0.99796 0.92973 1.22475 1.03337 0.91468 1.00762 1.23640 0.88781 1.01020 0.90581 1.67827 1.13157 1.25405 1.14407 1.23133 1.00150 0.86071 0.93439 1.22314 0.96881 0.82531 1.00133 0.93758 0.78913 0.91854 0.91156 0.92088 0.87054 0.87668 0.88721 0.84546 0.80594 0.78638 0.80969 0.91797 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.88 13.06 21.65 0.28 -58.60 16 2 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 3 Si 0.97 47.29 29.55 68.60 2.03 49.31 16 4 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 7 C -0.25 -14.27 9.93 84.03 0.83 -13.43 16 8 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 9 N -0.73 -37.06 5.12 -322.57 -1.65 -38.71 16 10 C 0.17 6.73 2.92 45.07 0.13 6.86 16 11 H 0.03 1.38 8.08 -2.39 -0.02 1.37 16 12 C -0.12 -3.51 5.35 30.62 0.16 -3.34 16 13 C -0.12 -2.53 6.08 30.67 0.19 -2.34 16 14 C 0.09 1.94 5.38 86.36 0.46 2.40 16 15 N -0.59 -18.08 2.97 -822.30 -2.44 -20.52 16 16 C 0.55 18.19 7.27 86.79 0.63 18.82 16 17 O -0.59 -25.06 16.48 -3.86 -0.06 -25.12 16 18 C -0.19 -4.56 5.03 -19.99 -0.10 -4.66 16 19 C -0.04 -0.86 9.89 22.73 0.22 -0.64 16 20 C -0.16 -2.06 10.10 22.33 0.23 -1.84 16 21 C 0.12 1.48 11.17 84.71 0.95 2.42 16 22 N -0.50 -9.02 10.35 -194.75 -2.01 -11.03 16 23 C 0.13 2.56 8.55 85.02 0.73 3.29 16 24 C 0.11 4.15 6.01 86.36 0.52 4.67 16 25 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 26 H 0.38 20.14 7.80 -92.71 -0.72 19.42 16 27 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.11 1.77 4.53 -2.39 -0.01 1.76 16 32 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 34 H 0.18 1.00 8.06 -2.91 -0.02 0.97 16 35 H 0.20 0.98 8.06 -2.91 -0.02 0.96 16 36 H 0.17 2.87 7.03 -2.91 -0.02 2.85 16 37 H 0.06 2.46 8.14 -2.39 -0.02 2.45 16 38 H 0.05 2.37 7.03 -2.39 -0.02 2.36 16 Total: -1.00 -74.94 315.66 1.90 -73.04 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.35 Total: 22.77 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 5.42 Total: 8.87 kcal Atomic # 7 Polarization: -123.04 SS G_CDS: -5.83 Total: -128.87 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.06 Total: -25.12 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.31 kcal Total: -74.94 1.90 -73.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998370805.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.645 kcal (2) G-P(sol) polarization free energy of solvation -74.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds