Wall clock time and date at job start Mon Mar 30 2020 02:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86809 * 120.00206 * 2 1 4 4 H 1.48499 * 109.47065 * 269.99850 * 3 2 1 5 5 H 1.48500 * 109.46955 * 29.99954 * 3 2 1 6 6 H 1.48492 * 109.46906 * 149.99732 * 3 2 1 7 7 C 1.38814 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99695 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99828 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.50142 * 325.00187 * 10 9 7 12 12 C 1.53044 * 109.50004 * 204.93511 * 10 9 7 13 13 C 1.53036 * 109.54142 * 178.65472 * 12 10 9 14 14 C 1.53195 * 109.31047 * 61.36410 * 13 12 10 15 15 N 1.46920 * 108.77711 * 305.36589 * 14 13 12 16 16 C 1.34786 * 120.63081 * 233.58475 * 15 14 13 17 17 O 1.21510 * 119.99797 * 174.17821 * 16 15 14 18 18 C 1.48145 * 119.99668 * 354.18942 * 16 15 14 19 19 C 1.39811 * 120.92313 * 320.12772 * 18 16 15 20 20 C 1.38155 * 119.00236 * 179.75756 * 19 18 16 21 21 N 1.31812 * 120.89482 * 0.54092 * 20 19 18 22 22 C 1.31811 * 122.04996 * 359.73252 * 21 20 19 23 23 C 1.38156 * 120.89467 * 359.97438 * 22 21 20 24 24 C 1.46922 * 118.74291 * 53.61195 * 15 14 13 25 25 H 0.97000 * 119.99951 * 359.97438 * 1 2 3 26 26 H 0.96998 * 119.99926 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.45904 * 298.67695 * 12 10 9 28 28 H 1.08998 * 109.45568 * 58.64635 * 12 10 9 29 29 H 1.08999 * 109.50108 * 181.31863 * 13 12 10 30 30 H 1.09008 * 109.49430 * 301.38667 * 13 12 10 31 31 H 1.08993 * 109.58631 * 65.15718 * 14 13 12 32 32 H 1.09010 * 109.58220 * 185.58224 * 14 13 12 33 33 H 1.08002 * 120.49995 * 0.02562 * 19 18 16 34 34 H 1.08000 * 119.55194 * 180.27156 * 20 19 18 35 35 H 1.07996 * 119.55555 * 180.02562 * 22 21 20 36 36 H 1.07996 * 120.49885 * 180.02562 * 23 22 21 37 37 H 1.08999 * 109.59158 * 186.60578 * 24 15 14 38 38 H 1.09004 * 109.58844 * 66.17209 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9683 -3.5508 -0.5916 12 6 1.1800 -4.7530 -0.6097 13 6 1.9564 -6.0714 -0.6421 14 6 2.3195 -6.4808 0.7888 15 7 3.0396 -5.3721 1.4296 16 6 4.2436 -5.5742 2.0008 17 8 4.8767 -4.6316 2.4334 18 6 4.7951 -6.9456 2.1008 19 6 3.9716 -8.0296 2.4193 20 6 4.5268 -9.2923 2.4971 21 7 5.8144 -9.4798 2.2863 22 6 6.6266 -8.4850 1.9892 23 6 6.1546 -7.1908 1.8850 24 6 2.4223 -4.0389 1.4365 25 1 -0.4850 0.8400 0.0004 26 1 0.3555 -2.3880 -0.0005 27 1 0.2814 -4.8755 -0.0051 28 1 0.8993 -4.4720 -1.6247 29 1 1.3390 -6.8462 -1.0966 30 1 2.8675 -5.9428 -1.2265 31 1 1.4099 -6.6979 1.3487 32 1 2.9564 -7.3652 0.7653 33 1 2.9166 -7.8828 2.5975 34 1 3.8980 -10.1367 2.7382 35 1 7.6750 -8.6845 1.8240 36 1 6.8257 -6.3806 1.6408 37 1 3.1269 -3.3119 1.8404 38 1 1.5209 -4.0567 2.0493 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998372774.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:42 Heat of formation + Delta-G solvation = 20.035062 kcal Electronic energy + Delta-G solvation = -21052.048243 eV Core-core repulsion = 17894.902917 eV Total energy + Delta-G solvation = -3157.145327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.90182 -39.35685 -37.36102 -34.66737 -33.02389 -32.18826 -31.53268 -31.15257 -28.33590 -26.06308 -24.22254 -23.82884 -23.52097 -21.94192 -20.61454 -19.36778 -17.64337 -17.13947 -16.77587 -16.21576 -15.81070 -15.24703 -15.09118 -14.53918 -14.30399 -13.99959 -13.90494 -13.78082 -13.48008 -13.36662 -12.84999 -12.45565 -12.36996 -11.95633 -11.41250 -11.13298 -10.87317 -10.73903 -10.64407 -10.31098 -10.23830 -10.03082 -9.87066 -9.75206 -9.53417 -9.38782 -9.12254 -8.45616 -7.04285 -5.81886 -3.12047 0.61514 0.81328 2.72858 3.01497 3.43022 3.48682 3.51040 3.56683 4.14423 4.24917 4.53921 4.56710 4.68399 4.79440 4.86073 5.02101 5.16702 5.24956 5.42087 5.44695 5.46921 5.50701 5.60045 5.74108 5.79518 5.88542 5.95721 6.10245 6.15218 6.28104 6.32141 6.41509 6.63385 6.76332 6.93142 7.48452 7.63044 7.68959 8.16864 8.36215 9.48197 10.01352 10.36727 11.40291 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.030110 B = 0.004150 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.701357 B = 6744.807703 C = 7373.409499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.127 4.127 13 C -0.130 4.130 14 C 0.097 3.903 15 N -0.596 5.596 16 C 0.550 3.450 17 O -0.528 6.528 18 C -0.074 4.074 19 C -0.146 4.146 20 C 0.094 3.906 21 N -0.476 5.476 22 C 0.097 3.903 23 C -0.124 4.124 24 C 0.091 3.909 25 H 0.256 0.744 26 H 0.386 0.614 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.144 0.856 37 H 0.092 0.908 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.102 -20.057 2.008 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.737 3.263 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.026 4.026 15 N -0.329 5.329 16 C 0.337 3.663 17 O -0.405 6.405 18 C -0.085 4.085 19 C -0.166 4.166 20 C -0.063 4.063 21 N -0.185 5.185 22 C -0.060 4.060 23 C -0.144 4.144 24 C -0.033 4.033 25 H 0.066 0.934 26 H 0.220 0.780 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.162 0.838 34 H 0.178 0.822 35 H 0.179 0.821 36 H 0.162 0.838 37 H 0.111 0.889 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.858 -20.182 2.289 21.438 hybrid contribution -0.327 1.818 -0.010 1.847 sum 6.532 -18.364 2.279 19.624 Atomic orbital electron populations 1.69658 1.05141 1.25829 1.57351 1.24746 0.95510 0.97766 1.02525 0.86191 0.78840 0.83650 0.77570 1.21631 1.21693 1.20567 1.19277 0.91127 0.83960 1.43215 0.91015 1.42371 1.05809 0.99552 1.88088 1.20485 0.94983 0.86522 0.92285 0.93082 1.21836 0.98675 0.94034 1.01950 1.21892 1.00986 0.98317 0.95685 1.22101 0.96937 0.89457 0.94125 1.48207 1.18237 1.11559 1.54857 1.18293 0.81351 0.87747 0.78929 1.90812 1.58570 1.42681 1.48395 1.20484 0.94741 0.94117 0.99158 1.22485 1.01329 0.93113 0.99721 1.22755 0.91427 0.96149 0.95927 1.67554 1.04937 1.35830 1.10221 1.22780 0.99983 0.87929 0.95323 1.22300 0.94684 0.99036 0.98390 1.22888 0.97814 0.81111 1.01448 0.93422 0.78029 0.91944 0.91285 0.90827 0.91589 0.91064 0.89640 0.83825 0.82155 0.82082 0.83805 0.88941 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.78 9.93 -15.06 -0.15 -6.93 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.72 -17.59 5.13 -53.30 -0.27 -17.86 16 10 C 0.17 3.28 2.92 -67.80 -0.20 3.08 16 11 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 12 C -0.13 -1.92 5.35 -26.69 -0.14 -2.06 16 13 C -0.13 -1.50 6.08 -26.61 -0.16 -1.66 16 14 C 0.10 1.06 4.93 -3.71 -0.02 1.04 16 15 N -0.60 -8.89 2.97 -173.76 -0.52 -9.41 16 16 C 0.55 8.74 7.38 -12.19 -0.09 8.65 16 17 O -0.53 -10.58 16.37 5.36 0.09 -10.50 16 18 C -0.07 -0.90 5.15 -104.65 -0.54 -1.44 16 19 C -0.15 -1.39 7.50 -39.02 -0.29 -1.68 16 20 C 0.09 0.82 11.17 -17.59 -0.20 0.63 16 21 N -0.48 -4.92 10.33 -13.30 -0.14 -5.06 16 22 C 0.10 0.92 11.17 -17.59 -0.20 0.72 16 23 C -0.12 -1.36 9.77 -39.02 -0.38 -1.74 16 24 C 0.09 1.69 6.03 -3.71 -0.02 1.66 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.39 9.91 7.80 -40.82 -0.32 9.59 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 31 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.09 0.78 4.73 -51.92 -0.25 0.54 16 33 H 0.14 1.11 6.64 -52.49 -0.35 0.76 16 34 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.09 2.01 7.00 -51.93 -0.36 1.65 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 315.02 15.07 4.75 4.75 Total: -1.00 -32.99 315.02 -7.92 -40.91 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.05 Total: 6.82 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.48 Total: -0.09 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.20 Total: -59.40 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.99 -7.92 -40.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998372774.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.947 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds