Wall clock time and date at job start Mon Mar 30 2020 02:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86809 * 120.00206 * 2 1 4 4 H 1.48499 * 109.47065 * 269.99850 * 3 2 1 5 5 H 1.48500 * 109.46955 * 29.99954 * 3 2 1 6 6 H 1.48492 * 109.46906 * 149.99732 * 3 2 1 7 7 C 1.38814 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99695 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99828 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.50142 * 325.00187 * 10 9 7 12 12 C 1.53044 * 109.50004 * 204.93511 * 10 9 7 13 13 C 1.53036 * 109.54142 * 178.65472 * 12 10 9 14 14 C 1.53195 * 109.31047 * 61.36410 * 13 12 10 15 15 N 1.46920 * 108.77711 * 305.36589 * 14 13 12 16 16 C 1.34786 * 120.63081 * 233.58475 * 15 14 13 17 17 O 1.21510 * 119.99797 * 174.17821 * 16 15 14 18 18 C 1.48145 * 119.99668 * 354.18942 * 16 15 14 19 19 C 1.39811 * 120.92313 * 320.12772 * 18 16 15 20 20 C 1.38155 * 119.00236 * 179.75756 * 19 18 16 21 21 N 1.31812 * 120.89482 * 0.54092 * 20 19 18 22 22 C 1.31811 * 122.04996 * 359.73252 * 21 20 19 23 23 C 1.38156 * 120.89467 * 359.97438 * 22 21 20 24 24 C 1.46922 * 118.74291 * 53.61195 * 15 14 13 25 25 H 0.97000 * 119.99951 * 359.97438 * 1 2 3 26 26 H 0.96998 * 119.99926 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.45904 * 298.67695 * 12 10 9 28 28 H 1.08998 * 109.45568 * 58.64635 * 12 10 9 29 29 H 1.08999 * 109.50108 * 181.31863 * 13 12 10 30 30 H 1.09008 * 109.49430 * 301.38667 * 13 12 10 31 31 H 1.08993 * 109.58631 * 65.15718 * 14 13 12 32 32 H 1.09010 * 109.58220 * 185.58224 * 14 13 12 33 33 H 1.08002 * 120.49995 * 0.02562 * 19 18 16 34 34 H 1.08000 * 119.55194 * 180.27156 * 20 19 18 35 35 H 1.07996 * 119.55555 * 180.02562 * 22 21 20 36 36 H 1.07996 * 120.49885 * 180.02562 * 23 22 21 37 37 H 1.08999 * 109.59158 * 186.60578 * 24 15 14 38 38 H 1.09004 * 109.58844 * 66.17209 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9683 -3.5508 -0.5916 12 6 1.1800 -4.7530 -0.6097 13 6 1.9564 -6.0714 -0.6421 14 6 2.3195 -6.4808 0.7888 15 7 3.0396 -5.3721 1.4296 16 6 4.2436 -5.5742 2.0008 17 8 4.8767 -4.6316 2.4334 18 6 4.7951 -6.9456 2.1008 19 6 3.9716 -8.0296 2.4193 20 6 4.5268 -9.2923 2.4971 21 7 5.8144 -9.4798 2.2863 22 6 6.6266 -8.4850 1.9892 23 6 6.1546 -7.1908 1.8850 24 6 2.4223 -4.0389 1.4365 25 1 -0.4850 0.8400 0.0004 26 1 0.3555 -2.3880 -0.0005 27 1 0.2814 -4.8755 -0.0051 28 1 0.8993 -4.4720 -1.6247 29 1 1.3390 -6.8462 -1.0966 30 1 2.8675 -5.9428 -1.2265 31 1 1.4099 -6.6979 1.3487 32 1 2.9564 -7.3652 0.7653 33 1 2.9166 -7.8828 2.5975 34 1 3.8980 -10.1367 2.7382 35 1 7.6750 -8.6845 1.8240 36 1 6.8257 -6.3806 1.6408 37 1 3.1269 -3.3119 1.8404 38 1 1.5209 -4.0567 2.0493 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998372774.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:42 Heat of formation + Delta-G solvation = -2.848624 kcal Electronic energy + Delta-G solvation = -21053.040554 eV Core-core repulsion = 17894.902917 eV Total energy + Delta-G solvation = -3158.137638 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.90416 -40.39145 -38.73380 -36.33625 -34.34437 -33.36207 -32.79210 -32.26411 -29.99990 -27.23721 -25.95658 -24.82946 -24.47097 -23.27839 -21.91569 -20.58839 -19.18805 -18.70417 -17.77537 -17.08162 -16.90317 -16.78148 -16.13361 -16.01120 -15.54596 -15.46437 -15.14709 -14.80505 -14.69248 -14.59539 -14.07870 -13.99613 -13.69644 -13.12446 -12.91699 -12.72559 -12.52927 -12.24563 -12.08467 -11.93162 -11.74745 -11.45813 -11.39049 -11.10807 -10.87878 -10.45352 -10.12550 -9.84667 -9.05480 -8.01163 -5.30517 -0.25935 0.09350 1.43102 1.44232 1.53212 1.56371 1.84207 2.51454 2.78393 3.23223 3.32324 3.53148 3.69811 3.84635 3.93382 3.97011 3.99657 4.06932 4.16085 4.28379 4.34064 4.53676 4.55257 4.67015 4.78098 4.82258 4.82558 4.85419 4.97827 5.06820 5.11809 5.34205 5.39847 5.41670 5.51183 5.61854 6.21632 6.28687 6.91143 6.93890 7.28665 8.00083 8.25860 9.21358 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.030110 B = 0.004150 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.701357 B = 6744.807703 C = 7373.409499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.065 4.065 3 Si 0.967 3.033 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.248 4.248 8 H 0.064 0.936 9 N -0.729 5.729 10 C 0.167 3.833 11 H 0.028 0.972 12 C -0.118 4.118 13 C -0.122 4.122 14 C 0.092 3.908 15 N -0.593 5.593 16 C 0.546 3.454 17 O -0.584 6.584 18 C -0.091 4.091 19 C -0.138 4.138 20 C 0.102 3.898 21 N -0.490 5.490 22 C 0.102 3.898 23 C -0.136 4.136 24 C 0.106 3.894 25 H 0.254 0.746 26 H 0.379 0.621 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.114 0.886 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.166 0.834 34 H 0.198 0.802 35 H 0.188 0.812 36 H 0.137 0.863 37 H 0.049 0.951 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.931 -23.220 1.948 24.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.258 4.258 3 Si 0.796 3.204 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.369 5.369 10 C 0.057 3.943 11 H 0.046 0.954 12 C -0.156 4.156 13 C -0.161 4.161 14 C -0.029 4.029 15 N -0.324 5.324 16 C 0.335 3.665 17 O -0.465 6.465 18 C -0.103 4.103 19 C -0.158 4.158 20 C -0.054 4.054 21 N -0.199 5.199 22 C -0.054 4.054 23 C -0.157 4.157 24 C -0.019 4.019 25 H 0.063 0.937 26 H 0.211 0.789 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.184 0.816 34 H 0.215 0.785 35 H 0.205 0.795 36 H 0.155 0.845 37 H 0.067 0.933 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.702 -23.416 2.210 24.456 hybrid contribution -0.235 2.692 0.015 2.702 sum 6.467 -20.724 2.225 21.823 Atomic orbital electron populations 1.69780 1.06281 1.26243 1.58912 1.25460 0.96371 1.00716 1.03207 0.85246 0.77634 0.79920 0.77616 1.21009 1.21613 1.20319 1.19506 0.91012 0.85530 1.41966 0.91824 1.42489 1.05555 1.00521 1.88311 1.20649 0.94637 0.86220 0.92803 0.95376 1.21745 0.98550 0.94254 1.01084 1.21890 1.00741 0.97081 0.96341 1.22485 0.98147 0.88595 0.93628 1.48217 1.18305 1.11098 1.54818 1.18932 0.80928 0.88892 0.77774 1.90776 1.60057 1.44870 1.50775 1.20260 0.95680 0.92537 1.01788 1.22690 1.02054 0.92362 0.98670 1.23348 0.91200 0.96785 0.94083 1.67656 1.05833 1.35976 1.10450 1.23128 1.01176 0.86912 0.94229 1.22369 0.94328 0.99808 0.99171 1.22311 0.96842 0.82575 1.00165 0.93746 0.78862 0.90930 0.92024 0.86763 0.92418 0.88288 0.87000 0.81626 0.78532 0.79548 0.84520 0.93258 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.54 13.06 21.65 0.28 -58.26 16 2 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 3 Si 0.97 47.32 29.55 68.60 2.03 49.34 16 4 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.25 -14.22 9.93 84.03 0.83 -13.39 16 8 H 0.06 3.67 7.83 -2.91 -0.02 3.64 16 9 N -0.73 -36.85 5.13 -322.55 -1.65 -38.51 16 10 C 0.17 6.64 2.92 45.07 0.13 6.77 16 11 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 12 C -0.12 -3.43 5.35 30.62 0.16 -3.26 16 13 C -0.12 -2.44 6.08 30.67 0.19 -2.25 16 14 C 0.09 1.70 4.93 86.36 0.43 2.13 16 15 N -0.59 -17.36 2.97 -821.96 -2.44 -19.80 16 16 C 0.55 17.52 7.38 86.87 0.64 18.16 16 17 O -0.58 -24.76 16.37 -3.75 -0.06 -24.82 16 18 C -0.09 -2.12 5.15 -19.88 -0.10 -2.22 16 19 C -0.14 -2.13 7.50 22.63 0.17 -1.96 16 20 C 0.10 1.36 11.17 84.68 0.95 2.30 16 21 N -0.49 -8.47 10.33 -196.00 -2.03 -10.50 16 22 C 0.10 1.71 11.17 84.68 0.95 2.65 16 23 C -0.14 -2.88 9.77 22.63 0.22 -2.66 16 24 C 0.11 4.05 6.03 86.37 0.52 4.57 16 25 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 26 H 0.38 19.98 7.80 -92.71 -0.72 19.26 16 27 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.10 1.38 8.13 -2.39 -0.02 1.36 16 32 H 0.11 1.56 4.73 -2.38 -0.01 1.55 16 33 H 0.17 1.79 6.64 -2.91 -0.02 1.77 16 34 H 0.20 1.13 8.06 -2.91 -0.02 1.10 16 35 H 0.19 2.00 8.06 -2.91 -0.02 1.97 16 36 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.05 2.29 7.00 -2.39 -0.02 2.28 16 38 H 0.07 2.52 8.14 -2.38 -0.02 2.51 16 Total: -1.00 -75.44 315.02 2.03 -73.41 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.35 Total: 21.57 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 5.55 Total: 7.56 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -5.84 Total: -127.07 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.06 Total: -24.82 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.34 kcal Total: -75.44 2.03 -73.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998372774.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.564 kcal (2) G-P(sol) polarization free energy of solvation -75.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds