Wall clock time and date at job start Mon Mar 30 2020 02:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 119.99933 * 2 1 4 4 H 1.48497 * 109.47143 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47063 * 300.00354 * 3 2 1 6 6 H 1.48501 * 109.47065 * 60.00237 * 3 2 1 7 7 C 1.38817 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99537 * 179.72479 * 7 2 1 9 9 N 1.36935 * 119.99865 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99724 * 179.72783 * 9 7 2 11 11 H 1.09001 * 109.49437 * 35.06210 * 10 9 7 12 12 C 1.53036 * 109.50104 * 155.15784 * 10 9 7 13 13 C 1.53029 * 109.54241 * 181.31598 * 12 10 9 14 14 C 1.53199 * 109.31111 * 298.63822 * 13 12 10 15 15 N 1.46925 * 108.77831 * 54.63376 * 14 13 12 16 16 C 1.34774 * 120.63173 * 126.41504 * 15 14 13 17 17 O 1.21517 * 119.99610 * 176.16525 * 16 15 14 18 18 C 1.48147 * 119.99866 * 356.16257 * 16 15 14 19 19 C 1.39813 * 120.92475 * 49.77959 * 18 16 15 20 20 C 1.38150 * 119.00648 * 179.75084 * 19 18 16 21 21 N 1.31818 * 120.89050 * 0.53677 * 20 19 18 22 22 C 1.31810 * 122.05059 * 359.73181 * 21 20 19 23 23 C 1.38147 * 120.89564 * 359.97438 * 22 21 20 24 24 C 1.46930 * 118.73399 * 306.39437 * 15 14 13 25 25 H 0.96994 * 120.00129 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00035 * 359.72137 * 9 7 2 27 27 H 1.09000 * 109.46210 * 301.34085 * 12 10 9 28 28 H 1.09003 * 109.45909 * 61.29314 * 12 10 9 29 29 H 1.08998 * 109.50412 * 178.68353 * 13 12 10 30 30 H 1.08998 * 109.49839 * 58.58512 * 13 12 10 31 31 H 1.09003 * 109.58407 * 294.84407 * 14 13 12 32 32 H 1.09000 * 109.70502 * 174.49310 * 14 13 12 33 33 H 1.08007 * 120.49908 * 359.97438 * 19 18 16 34 34 H 1.07997 * 119.55598 * 180.27339 * 20 19 18 35 35 H 1.08004 * 119.55528 * 180.02562 * 22 21 20 36 36 H 1.08007 * 120.50038 * 179.97438 * 23 22 21 37 37 H 1.08997 * 109.58529 * 293.81556 * 24 15 14 38 38 H 1.09001 * 109.58511 * 173.39736 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0050 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0082 11 1 2.9705 -3.5531 0.5790 12 6 1.1820 -4.7556 0.5978 13 6 1.9581 -6.0743 0.6215 14 6 2.3163 -6.4772 -0.8126 15 7 3.0345 -5.3656 -1.4508 16 6 4.2364 -5.5654 -2.0270 17 8 4.7885 -4.6546 -2.6121 18 6 4.8843 -6.8952 -1.9469 19 6 4.1824 -8.0577 -2.2796 20 6 4.8270 -9.2767 -2.1957 21 7 6.0817 -9.3528 -1.7986 22 6 6.7777 -8.2825 -1.4707 23 6 6.2132 -7.0232 -1.5313 24 6 2.4172 -4.0323 -1.4492 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 0.0021 27 1 0.9046 -4.4792 1.6150 28 1 0.2812 -4.8752 -0.0042 29 1 1.3421 -6.8510 1.0745 30 1 2.8715 -5.9485 1.2028 31 1 1.4046 -6.6914 -1.3704 32 1 2.9520 -7.3624 -0.7977 33 1 3.1526 -8.0032 -2.6009 34 1 4.2946 -10.1798 -2.4548 35 1 7.8036 -8.3916 -1.1511 36 1 6.7893 -6.1506 -1.2607 37 1 1.5139 -4.0471 -2.0590 38 1 3.1206 -3.3036 -1.8523 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998372775.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:46 Heat of formation + Delta-G solvation = 19.082397 kcal Electronic energy + Delta-G solvation = -21064.575518 eV Core-core repulsion = 17907.388880 eV Total energy + Delta-G solvation = -3157.186637 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.88952 -39.36016 -37.36463 -34.65086 -33.01964 -32.18282 -31.55275 -31.16111 -28.34357 -26.05315 -24.22244 -23.82670 -23.55148 -21.94456 -20.62071 -19.33792 -17.66077 -17.14264 -16.76266 -16.27997 -15.86108 -15.19955 -15.09889 -14.53108 -14.29207 -13.98877 -13.92162 -13.84517 -13.45788 -13.38649 -12.80236 -12.47572 -12.37015 -11.94627 -11.42409 -11.13801 -10.89123 -10.74000 -10.65800 -10.34352 -10.21894 -10.02730 -9.86441 -9.76340 -9.52645 -9.38683 -9.13222 -8.46366 -7.05093 -5.82783 -3.12977 0.66114 0.81348 2.66627 3.01900 3.42022 3.48633 3.50710 3.54176 4.14519 4.23980 4.53925 4.57746 4.68695 4.79944 4.85742 5.01878 5.16765 5.24495 5.41520 5.45577 5.46902 5.50054 5.59985 5.73731 5.80502 5.87524 5.96091 6.09862 6.14432 6.27862 6.32147 6.40787 6.62257 6.75247 6.92307 7.47887 7.63521 7.68232 8.16090 8.35257 9.47301 10.00417 10.35740 11.39436 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029269 B = 0.004191 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.419670 B = 6679.749635 C = 7269.609812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.095 3.905 15 N -0.595 5.595 16 C 0.551 3.449 17 O -0.528 6.528 18 C -0.069 4.069 19 C -0.148 4.148 20 C 0.096 3.904 21 N -0.477 5.477 22 C 0.099 3.901 23 C -0.127 4.127 24 C 0.092 3.908 25 H 0.256 0.744 26 H 0.386 0.614 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.143 0.857 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.143 0.857 37 H 0.065 0.935 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.457 -19.885 -1.312 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.168 4.168 14 C -0.027 4.027 15 N -0.327 5.327 16 C 0.337 3.663 17 O -0.405 6.405 18 C -0.081 4.081 19 C -0.168 4.168 20 C -0.061 4.061 21 N -0.187 5.187 22 C -0.058 4.058 23 C -0.147 4.147 24 C -0.032 4.032 25 H 0.065 0.935 26 H 0.220 0.780 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.160 0.840 34 H 0.178 0.822 35 H 0.179 0.821 36 H 0.161 0.839 37 H 0.083 0.917 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.234 -20.007 -1.558 21.331 hybrid contribution -0.397 1.799 -0.117 1.846 sum 6.838 -18.208 -1.675 19.521 Atomic orbital electron populations 1.69670 1.05138 1.25733 1.57378 1.24752 0.95518 0.97784 1.02517 0.86117 0.78963 0.83936 0.77212 1.20416 1.21734 1.21793 1.19316 0.91141 0.83948 1.43145 0.90975 1.42383 1.05834 0.99557 1.88031 1.20486 0.95012 0.86549 0.92230 0.93102 1.21831 0.98692 0.94011 1.01956 1.21879 1.00975 0.98309 0.95672 1.22081 0.97043 0.89432 0.94185 1.48237 1.18280 1.11427 1.54789 1.18297 0.81260 0.87140 0.79617 1.90821 1.63770 1.43399 1.42516 1.20461 0.95008 0.94089 0.98521 1.22391 1.01401 0.92626 1.00428 1.22745 0.90697 0.97164 0.95454 1.67559 1.07949 1.33416 1.09755 1.22772 1.00010 0.87371 0.95629 1.22260 0.94067 0.99906 0.98510 1.22898 0.97929 0.81047 1.01366 0.93459 0.78012 0.91275 0.91935 0.90854 0.91607 0.91031 0.89613 0.83961 0.82161 0.82071 0.83913 0.91693 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.75 9.93 -15.06 -0.15 -6.90 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.72 -17.54 5.13 -53.31 -0.27 -17.81 16 10 C 0.17 3.26 2.92 -67.81 -0.20 3.07 16 11 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 12 C -0.13 -1.92 5.35 -26.70 -0.14 -2.06 16 13 C -0.13 -1.50 6.08 -26.61 -0.16 -1.66 16 14 C 0.10 1.05 5.41 -3.71 -0.02 1.03 16 15 N -0.59 -8.90 2.97 -173.77 -0.52 -9.42 16 16 C 0.55 8.75 7.31 -12.19 -0.09 8.67 16 17 O -0.53 -10.62 16.48 5.35 0.09 -10.53 16 18 C -0.07 -0.85 5.05 -104.65 -0.53 -1.38 16 19 C -0.15 -1.41 7.48 -39.02 -0.29 -1.70 16 20 C 0.10 0.84 11.17 -17.59 -0.20 0.65 16 21 N -0.48 -4.95 10.33 -13.30 -0.14 -5.09 16 22 C 0.10 0.95 11.17 -17.59 -0.20 0.75 16 23 C -0.13 -1.40 9.86 -39.02 -0.38 -1.79 16 24 C 0.09 1.69 6.00 -3.71 -0.02 1.67 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 26 H 0.39 9.90 7.80 -40.82 -0.32 9.59 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.79 4.49 -51.93 -0.23 0.56 16 33 H 0.14 1.09 7.05 -52.48 -0.37 0.72 16 34 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.14 1.51 8.06 -52.48 -0.42 1.08 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.09 2.00 7.03 -51.93 -0.36 1.63 16 LS Contribution 315.70 15.07 4.76 4.76 Total: -1.00 -32.98 315.70 -7.92 -40.89 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.06 Total: 6.77 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -2.48 Total: -0.02 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.20 Total: -59.33 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.98 -7.92 -40.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998372775.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.976 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds