Wall clock time and date at job start Mon Mar 30 2020 02:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 119.99933 * 2 1 4 4 H 1.48497 * 109.47143 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47063 * 300.00354 * 3 2 1 6 6 H 1.48501 * 109.47065 * 60.00237 * 3 2 1 7 7 C 1.38817 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99537 * 179.72479 * 7 2 1 9 9 N 1.36935 * 119.99865 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99724 * 179.72783 * 9 7 2 11 11 H 1.09001 * 109.49437 * 35.06210 * 10 9 7 12 12 C 1.53036 * 109.50104 * 155.15784 * 10 9 7 13 13 C 1.53029 * 109.54241 * 181.31598 * 12 10 9 14 14 C 1.53199 * 109.31111 * 298.63822 * 13 12 10 15 15 N 1.46925 * 108.77831 * 54.63376 * 14 13 12 16 16 C 1.34774 * 120.63173 * 126.41504 * 15 14 13 17 17 O 1.21517 * 119.99610 * 176.16525 * 16 15 14 18 18 C 1.48147 * 119.99866 * 356.16257 * 16 15 14 19 19 C 1.39813 * 120.92475 * 49.77959 * 18 16 15 20 20 C 1.38150 * 119.00648 * 179.75084 * 19 18 16 21 21 N 1.31818 * 120.89050 * 0.53677 * 20 19 18 22 22 C 1.31810 * 122.05059 * 359.73181 * 21 20 19 23 23 C 1.38147 * 120.89564 * 359.97438 * 22 21 20 24 24 C 1.46930 * 118.73399 * 306.39437 * 15 14 13 25 25 H 0.96994 * 120.00129 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00035 * 359.72137 * 9 7 2 27 27 H 1.09000 * 109.46210 * 301.34085 * 12 10 9 28 28 H 1.09003 * 109.45909 * 61.29314 * 12 10 9 29 29 H 1.08998 * 109.50412 * 178.68353 * 13 12 10 30 30 H 1.08998 * 109.49839 * 58.58512 * 13 12 10 31 31 H 1.09003 * 109.58407 * 294.84407 * 14 13 12 32 32 H 1.09000 * 109.70502 * 174.49310 * 14 13 12 33 33 H 1.08007 * 120.49908 * 359.97438 * 19 18 16 34 34 H 1.07997 * 119.55598 * 180.27339 * 20 19 18 35 35 H 1.08004 * 119.55528 * 180.02562 * 22 21 20 36 36 H 1.08007 * 120.50038 * 179.97438 * 23 22 21 37 37 H 1.08997 * 109.58529 * 293.81556 * 24 15 14 38 38 H 1.09001 * 109.58511 * 173.39736 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0050 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0082 11 1 2.9705 -3.5531 0.5790 12 6 1.1820 -4.7556 0.5978 13 6 1.9581 -6.0743 0.6215 14 6 2.3163 -6.4772 -0.8126 15 7 3.0345 -5.3656 -1.4508 16 6 4.2364 -5.5654 -2.0270 17 8 4.7885 -4.6546 -2.6121 18 6 4.8843 -6.8952 -1.9469 19 6 4.1824 -8.0577 -2.2796 20 6 4.8270 -9.2767 -2.1957 21 7 6.0817 -9.3528 -1.7986 22 6 6.7777 -8.2825 -1.4707 23 6 6.2132 -7.0232 -1.5313 24 6 2.4172 -4.0323 -1.4492 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 0.0021 27 1 0.9046 -4.4792 1.6150 28 1 0.2812 -4.8752 -0.0042 29 1 1.3421 -6.8510 1.0745 30 1 2.8715 -5.9485 1.2028 31 1 1.4046 -6.6914 -1.3704 32 1 2.9520 -7.3624 -0.7977 33 1 3.1526 -8.0032 -2.6009 34 1 4.2946 -10.1798 -2.4548 35 1 7.8036 -8.3916 -1.1511 36 1 6.7893 -6.1506 -1.2607 37 1 1.5139 -4.0471 -2.0590 38 1 3.1206 -3.3036 -1.8523 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998372775.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:45 Heat of formation + Delta-G solvation = -3.721404 kcal Electronic energy + Delta-G solvation = -21065.564365 eV Core-core repulsion = 17907.388880 eV Total energy + Delta-G solvation = -3158.175484 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.89544 -40.39796 -38.74113 -36.32505 -34.32645 -33.37295 -32.79424 -32.27722 -30.01008 -27.23175 -25.95422 -24.84275 -24.48469 -23.28242 -21.91803 -20.56640 -19.18669 -18.73062 -17.75904 -17.18606 -16.91207 -16.76283 -16.09021 -16.04201 -15.54461 -15.47253 -15.12703 -14.79016 -14.74191 -14.61998 -14.06253 -13.96798 -13.70880 -13.13066 -12.93922 -12.71721 -12.55254 -12.20035 -12.08655 -11.94628 -11.75398 -11.47963 -11.39641 -11.12197 -10.86495 -10.44528 -10.12931 -9.85517 -9.06162 -8.01439 -5.30854 -0.20501 0.09051 1.42178 1.44164 1.47613 1.54002 1.84842 2.51220 2.76764 3.22027 3.32154 3.53226 3.69958 3.86243 3.92838 3.96350 3.99306 4.07010 4.15601 4.27974 4.33658 4.53031 4.55028 4.66785 4.77942 4.81725 4.81887 4.85098 4.98568 5.06747 5.11280 5.33727 5.38853 5.41251 5.50825 5.61668 6.21383 6.27555 6.91435 6.92574 7.28402 7.99714 8.25251 9.21314 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029269 B = 0.004191 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.419670 B = 6679.749635 C = 7269.609812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.065 4.065 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.247 4.247 8 H 0.065 0.935 9 N -0.729 5.729 10 C 0.167 3.833 11 H 0.031 0.969 12 C -0.118 4.118 13 C -0.121 4.121 14 C 0.091 3.909 15 N -0.592 5.592 16 C 0.547 3.453 17 O -0.584 6.584 18 C -0.087 4.087 19 C -0.141 4.141 20 C 0.104 3.896 21 N -0.491 5.491 22 C 0.104 3.896 23 C -0.140 4.140 24 C 0.107 3.893 25 H 0.253 0.747 26 H 0.378 0.622 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.165 0.835 34 H 0.198 0.802 35 H 0.188 0.812 36 H 0.136 0.864 37 H 0.065 0.935 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.506 -23.032 -1.080 23.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.258 4.258 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.369 5.369 10 C 0.057 3.943 11 H 0.049 0.951 12 C -0.156 4.156 13 C -0.160 4.160 14 C -0.030 4.030 15 N -0.323 5.323 16 C 0.336 3.664 17 O -0.465 6.465 18 C -0.099 4.099 19 C -0.161 4.161 20 C -0.052 4.052 21 N -0.201 5.201 22 C -0.052 4.052 23 C -0.160 4.160 24 C -0.019 4.019 25 H 0.062 0.938 26 H 0.211 0.789 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.131 0.869 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.183 0.817 34 H 0.215 0.785 35 H 0.204 0.796 36 H 0.154 0.846 37 H 0.083 0.917 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.300 -23.224 -1.305 24.379 hybrid contribution -0.373 2.667 -0.197 2.700 sum 6.927 -20.557 -1.502 21.745 Atomic orbital electron populations 1.69791 1.06302 1.26170 1.58988 1.25468 0.96373 1.00744 1.03235 0.85174 0.78028 0.80192 0.76988 1.19835 1.21803 1.21402 1.19548 0.91049 0.85479 1.41808 0.91702 1.42507 1.05579 1.00552 1.88241 1.20647 0.94736 0.86208 0.92668 0.95130 1.21742 0.98538 0.94252 1.01113 1.21872 1.00792 0.97053 0.96250 1.22451 0.98156 0.88609 0.93735 1.48245 1.18368 1.10962 1.54738 1.18926 0.80940 0.88140 0.78436 1.90784 1.65091 1.45645 1.44955 1.20242 0.95726 0.92793 1.01093 1.22606 1.02295 0.91660 0.99494 1.23337 0.90170 0.98032 0.93671 1.67661 1.08831 1.33521 1.10058 1.23119 1.01013 0.86391 0.94703 1.22333 0.93818 1.00634 0.99263 1.22322 0.96886 0.82525 1.00155 0.93764 0.78882 0.91928 0.91078 0.86860 0.92248 0.88550 0.86927 0.81716 0.78546 0.79553 0.84561 0.91664 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.52 13.06 21.65 0.28 -58.24 16 2 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 3 Si 0.97 47.21 29.55 68.60 2.03 49.24 16 4 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 7 C -0.25 -14.07 9.93 84.04 0.83 -13.24 16 8 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 9 N -0.73 -36.74 5.13 -322.58 -1.65 -38.40 16 10 C 0.17 6.62 2.92 45.07 0.13 6.75 16 11 H 0.03 1.32 8.08 -2.39 -0.02 1.31 16 12 C -0.12 -3.42 5.35 30.62 0.16 -3.26 16 13 C -0.12 -2.42 6.08 30.67 0.19 -2.23 16 14 C 0.09 1.71 5.41 86.36 0.47 2.18 16 15 N -0.59 -17.40 2.97 -821.96 -2.44 -19.84 16 16 C 0.55 17.54 7.31 86.88 0.63 18.18 16 17 O -0.58 -24.73 16.48 -3.77 -0.06 -24.80 16 18 C -0.09 -2.03 5.05 -19.88 -0.10 -2.13 16 19 C -0.14 -2.18 7.48 22.63 0.17 -2.01 16 20 C 0.10 1.39 11.17 84.67 0.95 2.34 16 21 N -0.49 -8.54 10.33 -196.00 -2.03 -10.57 16 22 C 0.10 1.75 11.17 84.67 0.95 2.70 16 23 C -0.14 -2.96 9.86 22.63 0.22 -2.74 16 24 C 0.11 4.06 6.00 86.36 0.52 4.58 16 25 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 26 H 0.38 19.96 7.80 -92.71 -0.72 19.24 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.11 1.59 4.49 -2.39 -0.01 1.58 16 33 H 0.17 1.78 7.05 -2.91 -0.02 1.75 16 34 H 0.20 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.19 2.02 8.06 -2.91 -0.02 1.99 16 36 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.05 2.30 7.03 -2.39 -0.02 2.29 16 Total: -1.00 -75.18 315.70 2.06 -73.12 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.35 Total: 21.69 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 5.59 Total: 7.80 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -5.84 Total: -127.05 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.06 Total: -24.80 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -75.18 2.06 -73.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998372775.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.398 kcal (2) G-P(sol) polarization free energy of solvation -75.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds