Wall clock time and date at job start Mon Mar 30 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99786 * 2 1 4 4 H 1.48502 * 109.47177 * 269.99545 * 3 2 1 5 5 H 1.48494 * 109.47206 * 29.99785 * 3 2 1 6 6 H 1.48500 * 109.46943 * 149.99860 * 3 2 1 7 7 C 1.38809 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00404 * 359.97438 * 7 2 1 9 9 N 1.36941 * 119.99733 * 180.02562 * 7 2 1 10 10 C 1.46496 * 119.99876 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.50352 * 324.99656 * 10 9 7 12 12 C 1.53049 * 109.52403 * 204.91621 * 10 9 7 13 13 C 1.53039 * 109.53900 * 178.67167 * 12 10 9 14 14 C 1.53192 * 109.31561 * 61.35863 * 13 12 10 15 15 N 1.46918 * 108.77883 * 305.37081 * 14 13 12 16 16 C 1.34777 * 120.63231 * 233.58096 * 15 14 13 17 17 O 1.21511 * 120.00665 * 172.30207 * 16 15 14 18 18 C 1.48176 * 119.99608 * 352.30754 * 16 15 14 19 19 C 1.39311 * 119.72071 * 170.51874 * 18 16 15 20 20 C 1.38588 * 119.05721 * 179.75384 * 19 18 16 21 21 C 1.38628 * 118.48729 * 0.50801 * 20 19 18 22 22 C 1.38556 * 119.35420 * 359.73463 * 21 20 19 23 23 N 1.31523 * 120.89946 * 0.02562 * 22 21 20 24 24 C 1.46928 * 118.73960 * 53.60665 * 15 14 13 25 25 H 0.97001 * 119.99672 * 0.02562 * 1 2 3 26 26 H 0.96999 * 120.00092 * 359.97438 * 9 7 2 27 27 H 1.08996 * 109.45650 * 298.68599 * 12 10 9 28 28 H 1.08997 * 109.45693 * 58.64951 * 12 10 9 29 29 H 1.09008 * 109.49220 * 301.41475 * 13 12 10 30 30 H 1.08990 * 109.52571 * 181.33755 * 13 12 10 31 31 H 1.08999 * 109.58979 * 185.57627 * 14 13 12 32 32 H 1.09005 * 109.57951 * 65.15895 * 14 13 12 33 33 H 1.07995 * 120.47092 * 359.97438 * 19 18 16 34 34 H 1.07993 * 120.75693 * 180.24329 * 20 19 18 35 35 H 1.08003 * 120.32523 * 179.75062 * 21 20 19 36 36 H 1.07999 * 119.54996 * 179.97438 * 22 21 20 37 37 H 1.09006 * 109.58564 * 186.60387 * 24 15 14 38 38 H 1.08995 * 109.70659 * 66.24835 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0022 11 1 3.5650 -3.2064 0.5918 12 6 5.5006 -2.2593 0.6103 13 6 6.2538 -3.5912 0.6420 14 6 6.4265 -4.1099 -0.7890 15 7 5.1062 -4.1784 -1.4298 16 6 4.6788 -5.3217 -2.0015 17 8 3.5355 -5.4097 -2.4034 18 6 5.6033 -6.4714 -2.1397 19 6 5.1100 -7.7093 -2.5459 20 6 5.9876 -8.7740 -2.6756 21 6 7.3269 -8.5662 -2.3841 22 6 7.7470 -7.3091 -1.9802 23 7 6.8932 -6.3147 -1.8701 24 6 4.2608 -2.9767 -1.4362 25 1 -0.4850 0.8401 -0.0004 26 1 3.8647 -0.3621 0.0007 27 1 6.0562 -1.5423 0.0060 28 1 5.3978 -1.8760 1.6254 29 1 5.6863 -4.3162 1.2257 30 1 7.2334 -3.4449 1.0968 31 1 6.8736 -5.1037 -0.7661 32 1 7.0695 -3.4305 -1.3487 33 1 4.0592 -7.8366 -2.7601 34 1 5.6355 -9.7445 -2.9923 35 1 8.0360 -9.3762 -2.4712 36 1 8.7895 -7.1438 -1.7519 37 1 3.2787 -3.2230 -1.8402 38 1 4.7248 -2.2041 -2.0491 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998381501.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:42 Heat of formation + Delta-G solvation = 36.957929 kcal Electronic energy + Delta-G solvation = -21127.434543 eV Core-core repulsion = 17971.023047 eV Total energy + Delta-G solvation = -3156.411496 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.92631 -39.17143 -37.29085 -34.64485 -33.03444 -32.13970 -31.60033 -31.19967 -28.67620 -25.90610 -24.00112 -23.88079 -23.37351 -21.60860 -20.67880 -19.42161 -17.50029 -17.32743 -17.09629 -16.21742 -15.52276 -15.37603 -14.91623 -14.59509 -14.33509 -14.10458 -13.69853 -13.54525 -13.45539 -13.04815 -12.64690 -12.41057 -12.37853 -12.20509 -11.55088 -11.13732 -10.86283 -10.78068 -10.61794 -10.27940 -10.23395 -10.05372 -9.83345 -9.55796 -9.46453 -9.09449 -8.96740 -8.29265 -7.25352 -5.73939 -3.10973 0.44664 0.89498 2.76051 3.13263 3.39564 3.42071 3.47259 3.67421 3.94692 4.48366 4.52033 4.61072 4.68729 4.78415 5.00327 5.10550 5.26269 5.32214 5.44605 5.49780 5.60219 5.67593 5.79390 5.79621 5.88200 6.02088 6.04474 6.15634 6.19883 6.33440 6.43765 6.51268 6.78444 6.80135 6.99737 7.40777 7.70111 8.02715 8.32993 8.45214 9.22415 9.94091 10.13125 11.44192 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.033941 B = 0.004247 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.773570 B = 6590.920208 C = 7184.743911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.092 0.908 9 N -0.743 5.743 10 C 0.174 3.826 11 H 0.059 0.941 12 C -0.130 4.130 13 C -0.131 4.131 14 C 0.072 3.928 15 N -0.583 5.583 16 C 0.560 3.440 17 O -0.532 6.532 18 C 0.089 3.911 19 C -0.113 4.113 20 C -0.080 4.080 21 C -0.156 4.156 22 C 0.090 3.910 23 N -0.449 5.449 24 C 0.090 3.910 25 H 0.259 0.741 26 H 0.362 0.638 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.144 0.856 32 H 0.060 0.940 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.163 0.837 37 H 0.095 0.905 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.966 -16.999 -3.206 26.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.110 0.890 9 N -0.385 5.385 10 C 0.063 3.937 11 H 0.077 0.923 12 C -0.169 4.169 13 C -0.169 4.169 14 C -0.050 4.050 15 N -0.314 5.314 16 C 0.346 3.654 17 O -0.408 6.408 18 C -0.048 4.048 19 C -0.134 4.134 20 C -0.105 4.105 21 C -0.176 4.176 22 C -0.069 4.069 23 N -0.161 5.161 24 C -0.035 4.035 25 H 0.070 0.930 26 H 0.195 0.805 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.160 0.840 32 H 0.079 0.921 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.180 0.820 37 H 0.113 0.887 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.332 -16.229 -3.140 25.436 hybrid contribution 0.335 0.541 -0.286 0.698 sum 19.667 -15.687 -3.426 25.390 Atomic orbital electron populations 1.69713 1.05114 1.25805 1.57287 1.24679 0.95223 0.97173 1.01874 0.86554 0.79214 0.85009 0.77789 1.21049 1.21725 1.20290 1.19122 0.80423 0.94882 1.43222 0.89037 1.42736 1.04122 1.01763 1.89873 1.20447 0.91054 0.89389 0.92770 0.92305 1.21884 0.96667 0.96819 1.01491 1.21919 1.00335 0.97619 0.97069 1.22972 0.83639 1.06493 0.91938 1.48070 1.18576 1.10775 1.54017 1.17929 0.86205 0.82142 0.79165 1.90811 1.17897 1.81784 1.50357 1.21408 0.90788 0.94317 0.98305 1.22174 1.02289 0.92051 0.96852 1.21659 0.93205 0.99333 0.96348 1.22337 0.96793 0.98922 0.99547 1.22996 0.99625 0.88805 0.95441 1.67638 1.02798 1.32578 1.13094 1.22749 0.95660 0.84300 1.00750 0.93042 0.80483 0.92264 0.91611 0.91935 0.91170 0.84038 0.92123 0.83281 0.84084 0.84349 0.81982 0.88702 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.85 13.97 55.49 0.78 -29.08 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 22.35 27.74 -169.99 -4.71 17.64 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 7 C -0.25 -7.14 10.41 -15.06 -0.16 -7.29 16 8 H 0.09 2.88 8.06 -52.49 -0.42 2.46 16 9 N -0.74 -17.95 4.93 -53.31 -0.26 -18.22 16 10 C 0.17 3.51 2.92 -67.81 -0.20 3.31 16 11 H 0.06 1.29 8.08 -51.93 -0.42 0.87 16 12 C -0.13 -2.08 5.36 -26.69 -0.14 -2.22 16 13 C -0.13 -1.70 6.08 -26.61 -0.16 -1.86 16 14 C 0.07 0.96 5.89 -3.72 -0.02 0.94 16 15 N -0.58 -9.75 2.97 -173.76 -0.52 -10.26 16 16 C 0.56 9.66 7.65 -12.18 -0.09 9.57 16 17 O -0.53 -11.00 15.79 5.36 0.08 -10.92 16 18 C 0.09 1.19 6.58 -83.01 -0.55 0.64 16 19 C -0.11 -1.24 9.63 -39.05 -0.38 -1.62 16 20 C -0.08 -0.60 10.17 -39.31 -0.40 -1.00 16 21 C -0.16 -1.00 10.11 -39.32 -0.40 -1.39 16 22 C 0.09 0.69 11.18 -17.57 -0.20 0.49 16 23 N -0.45 -5.02 6.12 -9.80 -0.06 -5.08 16 24 C 0.09 1.75 6.03 -3.71 -0.02 1.73 16 25 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 26 H 0.36 8.49 5.66 -40.82 -0.23 8.26 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.14 1.72 4.00 -84.98 -0.34 1.38 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.15 1.66 7.67 -52.49 -0.40 1.26 16 34 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 36 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.09 2.16 7.00 -51.93 -0.36 1.80 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 311.58 15.07 4.70 4.70 Total: -1.00 -34.71 311.58 -7.96 -42.67 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.15 Total: 7.16 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -2.81 Total: 1.38 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -0.06 Total: -62.63 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.64 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.71 -7.96 -42.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998381501.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.629 kcal (2) G-P(sol) polarization free energy of solvation -34.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds