Wall clock time and date at job start Mon Mar 30 2020 01:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99786 * 2 1 4 4 H 1.48502 * 109.47177 * 269.99545 * 3 2 1 5 5 H 1.48494 * 109.47206 * 29.99785 * 3 2 1 6 6 H 1.48500 * 109.46943 * 149.99860 * 3 2 1 7 7 C 1.38809 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00404 * 359.97438 * 7 2 1 9 9 N 1.36941 * 119.99733 * 180.02562 * 7 2 1 10 10 C 1.46496 * 119.99876 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.50352 * 324.99656 * 10 9 7 12 12 C 1.53049 * 109.52403 * 204.91621 * 10 9 7 13 13 C 1.53039 * 109.53900 * 178.67167 * 12 10 9 14 14 C 1.53192 * 109.31561 * 61.35863 * 13 12 10 15 15 N 1.46918 * 108.77883 * 305.37081 * 14 13 12 16 16 C 1.34777 * 120.63231 * 233.58096 * 15 14 13 17 17 O 1.21511 * 120.00665 * 172.30207 * 16 15 14 18 18 C 1.48176 * 119.99608 * 352.30754 * 16 15 14 19 19 C 1.39311 * 119.72071 * 170.51874 * 18 16 15 20 20 C 1.38588 * 119.05721 * 179.75384 * 19 18 16 21 21 C 1.38628 * 118.48729 * 0.50801 * 20 19 18 22 22 C 1.38556 * 119.35420 * 359.73463 * 21 20 19 23 23 N 1.31523 * 120.89946 * 0.02562 * 22 21 20 24 24 C 1.46928 * 118.73960 * 53.60665 * 15 14 13 25 25 H 0.97001 * 119.99672 * 0.02562 * 1 2 3 26 26 H 0.96999 * 120.00092 * 359.97438 * 9 7 2 27 27 H 1.08996 * 109.45650 * 298.68599 * 12 10 9 28 28 H 1.08997 * 109.45693 * 58.64951 * 12 10 9 29 29 H 1.09008 * 109.49220 * 301.41475 * 13 12 10 30 30 H 1.08990 * 109.52571 * 181.33755 * 13 12 10 31 31 H 1.08999 * 109.58979 * 185.57627 * 14 13 12 32 32 H 1.09005 * 109.57951 * 65.15895 * 14 13 12 33 33 H 1.07995 * 120.47092 * 359.97438 * 19 18 16 34 34 H 1.07993 * 120.75693 * 180.24329 * 20 19 18 35 35 H 1.08003 * 120.32523 * 179.75062 * 21 20 19 36 36 H 1.07999 * 119.54996 * 179.97438 * 22 21 20 37 37 H 1.09006 * 109.58564 * 186.60387 * 24 15 14 38 38 H 1.08995 * 109.70659 * 66.24835 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0022 11 1 3.5650 -3.2064 0.5918 12 6 5.5006 -2.2593 0.6103 13 6 6.2538 -3.5912 0.6420 14 6 6.4265 -4.1099 -0.7890 15 7 5.1062 -4.1784 -1.4298 16 6 4.6788 -5.3217 -2.0015 17 8 3.5355 -5.4097 -2.4034 18 6 5.6033 -6.4714 -2.1397 19 6 5.1100 -7.7093 -2.5459 20 6 5.9876 -8.7740 -2.6756 21 6 7.3269 -8.5662 -2.3841 22 6 7.7470 -7.3091 -1.9802 23 7 6.8932 -6.3147 -1.8701 24 6 4.2608 -2.9767 -1.4362 25 1 -0.4850 0.8401 -0.0004 26 1 3.8647 -0.3621 0.0007 27 1 6.0562 -1.5423 0.0060 28 1 5.3978 -1.8760 1.6254 29 1 5.6863 -4.3162 1.2257 30 1 7.2334 -3.4449 1.0968 31 1 6.8736 -5.1037 -0.7661 32 1 7.0695 -3.4305 -1.3487 33 1 4.0592 -7.8366 -2.7601 34 1 5.6355 -9.7445 -2.9923 35 1 8.0360 -9.3762 -2.4712 36 1 8.7895 -7.1438 -1.7519 37 1 3.2787 -3.2230 -1.8402 38 1 4.7248 -2.2041 -2.0491 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998381501.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:41 Heat of formation + Delta-G solvation = 12.092579 kcal Electronic energy + Delta-G solvation = -21128.512786 eV Core-core repulsion = 17971.023047 eV Total energy + Delta-G solvation = -3157.489738 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.90694 -40.28908 -38.75052 -36.38326 -34.26183 -33.42067 -32.93610 -32.40941 -30.37028 -27.11733 -25.69845 -24.78853 -24.37868 -23.11011 -22.08196 -20.76167 -19.58871 -18.49051 -17.96209 -17.02505 -16.81308 -16.65230 -16.44174 -15.80651 -15.70791 -15.51435 -15.03578 -14.79057 -14.64732 -14.35091 -14.14866 -13.95536 -13.80115 -13.21915 -12.96265 -12.87936 -12.57900 -12.10516 -11.97363 -11.90176 -11.84306 -11.43207 -11.41253 -11.12741 -10.91798 -10.23708 -9.91043 -9.82064 -9.27600 -8.06429 -5.43134 -0.36207 0.25068 1.35425 1.41009 1.48250 1.67407 1.89473 2.45726 2.82628 3.04843 3.23921 3.50615 3.68264 3.92989 3.98421 4.05716 4.08314 4.10149 4.20814 4.32669 4.34769 4.44590 4.71545 4.72493 4.79434 4.83767 5.01122 5.07266 5.12499 5.19374 5.21164 5.32716 5.43185 5.51726 5.70810 5.84212 6.17183 6.35923 6.70387 7.01481 7.05723 7.74087 7.97590 9.15457 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.033941 B = 0.004247 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.773570 B = 6590.920208 C = 7184.743911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.063 4.063 3 Si 0.964 3.036 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.244 1.244 7 C -0.241 4.241 8 H 0.043 0.957 9 N -0.743 5.743 10 C 0.172 3.828 11 H 0.027 0.973 12 C -0.121 4.121 13 C -0.123 4.123 14 C 0.070 3.930 15 N -0.585 5.585 16 C 0.549 3.451 17 O -0.587 6.587 18 C 0.058 3.942 19 C -0.127 4.127 20 C -0.075 4.075 21 C -0.132 4.132 22 C 0.090 3.910 23 N -0.463 5.463 24 C 0.101 3.899 25 H 0.260 0.740 26 H 0.371 0.629 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.112 0.888 31 H 0.162 0.838 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.173 0.827 35 H 0.184 0.816 36 H 0.203 0.797 37 H 0.045 0.955 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.354 -17.983 -2.959 31.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.790 3.210 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.372 4.372 8 H 0.061 0.939 9 N -0.386 5.386 10 C 0.062 3.938 11 H 0.046 0.954 12 C -0.159 4.159 13 C -0.161 4.161 14 C -0.051 4.051 15 N -0.316 5.316 16 C 0.337 3.663 17 O -0.468 6.468 18 C -0.077 4.077 19 C -0.148 4.148 20 C -0.101 4.101 21 C -0.151 4.151 22 C -0.069 4.069 23 N -0.175 5.175 24 C -0.025 4.025 25 H 0.068 0.932 26 H 0.205 0.795 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.130 0.870 31 H 0.178 0.822 32 H 0.093 0.907 33 H 0.150 0.850 34 H 0.191 0.809 35 H 0.202 0.798 36 H 0.220 0.780 37 H 0.064 0.936 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 24.797 -17.246 -2.880 30.341 hybrid contribution -1.284 0.600 -0.403 1.473 sum 23.514 -16.646 -3.283 28.996 Atomic orbital electron populations 1.69922 1.07438 1.26955 1.59130 1.25625 0.96216 1.01688 1.01936 0.85285 0.78797 0.78666 0.78253 1.20303 1.21930 1.16839 1.18969 0.82689 0.93221 1.42312 0.93864 1.42634 1.02368 1.03619 1.90002 1.20594 0.93177 0.87055 0.92953 0.95446 1.21818 0.93662 0.99156 1.01303 1.21929 1.01764 0.95385 0.97035 1.23319 0.81737 1.08220 0.91826 1.48172 1.19419 1.09686 1.54295 1.18716 0.86342 0.83215 0.77980 1.90761 1.20521 1.82935 1.52591 1.20754 0.91389 0.93221 1.02332 1.22205 1.02413 0.92657 0.97575 1.22049 0.93400 0.99332 0.95283 1.22875 0.96683 0.99523 0.96005 1.23745 1.00620 0.88500 0.94019 1.67372 1.01857 1.34351 1.13913 1.22273 0.94243 0.85976 0.99960 0.93153 0.79488 0.90521 0.91324 0.92960 0.86982 0.82216 0.90669 0.85016 0.80924 0.79823 0.77996 0.93598 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -66.04 13.97 21.65 0.30 -65.74 16 2 C -0.06 -3.90 5.50 84.86 0.47 -3.44 16 3 Si 0.96 46.62 27.74 68.60 1.90 48.52 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.24 -10.41 6.52 99.48 0.65 -9.76 16 7 C -0.24 -14.73 10.41 84.03 0.88 -13.85 16 8 H 0.04 2.99 8.06 -2.91 -0.02 2.96 16 9 N -0.74 -36.72 4.93 -322.56 -1.59 -38.31 16 10 C 0.17 7.18 2.92 45.07 0.13 7.31 16 11 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 12 C -0.12 -3.65 5.36 30.62 0.16 -3.48 16 13 C -0.12 -2.88 6.08 30.67 0.19 -2.69 16 14 C 0.07 1.72 5.89 86.36 0.51 2.23 16 15 N -0.59 -20.27 2.97 -821.94 -2.44 -22.71 16 16 C 0.55 20.28 7.65 86.88 0.66 20.95 16 17 O -0.59 -27.03 15.79 -3.75 -0.06 -27.08 16 18 C 0.06 1.57 6.58 41.91 0.28 1.84 16 19 C -0.13 -2.81 9.63 22.61 0.22 -2.59 16 20 C -0.08 -0.89 10.17 22.45 0.23 -0.67 16 21 C -0.13 -0.98 10.11 22.44 0.23 -0.75 16 22 C 0.09 0.96 11.18 84.81 0.95 1.91 16 23 N -0.46 -9.23 6.12 -184.91 -1.13 -10.36 16 24 C 0.10 4.19 6.03 86.36 0.52 4.71 16 25 H 0.26 16.42 8.31 -92.71 -0.77 15.65 16 26 H 0.37 16.96 5.66 -92.71 -0.52 16.43 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.16 3.48 4.00 -67.64 -0.27 3.21 16 32 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.13 3.24 7.67 -2.91 -0.02 3.22 16 34 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 35 H 0.18 -0.19 8.06 -2.91 -0.02 -0.21 16 36 H 0.20 0.49 8.06 -2.91 -0.02 0.47 16 37 H 0.05 2.33 7.00 -2.38 -0.02 2.31 16 38 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -84.64 311.58 2.62 -82.01 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.23 Total: 22.19 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 5.41 Total: 11.47 kcal Atomic # 7 Polarization: -132.25 SS G_CDS: -4.86 Total: -137.12 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.06 Total: -27.08 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.90 Total: 48.52 kcal Total: -84.64 2.62 -82.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998381501.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.106 kcal (2) G-P(sol) polarization free energy of solvation -84.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds