Wall clock time and date at job start Mon Mar 30 2020 02:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00137 * 2 1 4 4 H 1.48495 * 109.46984 * 239.99671 * 3 2 1 5 5 H 1.48500 * 109.46904 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47058 * 119.99430 * 3 2 1 7 7 C 1.38810 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00327 * 164.52980 * 7 2 1 9 9 N 1.36939 * 120.00352 * 344.52484 * 7 2 1 10 10 C 1.47010 * 121.37262 * 335.97266 * 9 7 2 11 11 C 1.50319 * 109.16396 * 222.96294 * 10 9 7 12 12 C 1.29457 * 123.65117 * 349.28755 * 11 10 9 13 13 C 1.50694 * 117.69284 * 180.57773 * 12 11 10 14 14 N 1.46502 * 109.47861 * 94.99351 * 13 12 11 15 15 C 1.34772 * 120.00569 * 179.97438 * 14 13 12 16 16 O 1.21694 * 119.99678 * 0.02562 * 15 14 13 17 17 C 1.46677 * 120.00114 * 179.97438 * 15 14 13 18 18 C 1.37873 * 126.23363 * 179.68775 * 17 15 14 19 19 C 1.39829 * 107.08369 * 179.85041 * 18 17 15 20 20 C 1.35453 * 107.86577 * 0.42134 * 19 18 17 21 21 N 1.35526 * 108.87122 * 359.74023 * 20 19 18 22 22 H 0.97002 * 125.67527 * 180.02562 * 21 20 19 23 23 C 1.49964 * 124.61613 * 0.32872 * 12 11 10 24 24 C 1.47338 * 121.37669 * 155.98495 * 9 7 2 25 25 H 0.97002 * 119.99820 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.52256 * 103.05651 * 10 9 7 27 27 H 1.08999 * 109.52111 * 342.87265 * 10 9 7 28 28 H 1.08003 * 118.17335 * 168.99584 * 11 10 9 29 29 H 1.09006 * 109.47402 * 214.99724 * 13 12 11 30 30 H 1.09004 * 109.47463 * 334.99170 * 13 12 11 31 31 H 0.96998 * 119.99289 * 0.02562 * 14 13 12 32 32 H 1.08005 * 126.45328 * 0.02562 * 18 17 15 33 33 H 1.08004 * 126.06673 * 180.15980 * 19 18 17 34 34 H 1.07996 * 125.56192 * 179.72079 * 20 19 18 35 35 H 1.08995 * 109.43781 * 221.06658 * 23 12 11 36 36 H 1.09004 * 109.12988 * 101.67266 * 23 12 11 37 37 H 1.09002 * 109.78070 * 237.79078 * 24 9 7 38 38 H 1.09002 * 109.77840 * 358.60673 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0609 -1.2193 -0.2489 9 7 1.3628 -2.3665 0.3175 10 6 0.1442 -2.3652 1.1398 11 6 0.2243 -3.4823 2.1424 12 6 1.1230 -4.4135 2.1086 13 6 1.0698 -5.4771 3.1748 14 7 0.3296 -6.6368 2.6714 15 6 0.1545 -7.7176 3.4574 16 8 0.6108 -7.7298 4.5855 17 6 -0.5871 -8.8784 2.9536 18 6 -0.8363 -10.0473 3.6410 19 6 -1.5743 -10.8753 2.7895 20 6 -1.7510 -10.2162 1.6194 21 7 -1.1559 -9.0017 1.7061 22 1 -1.1346 -8.3308 1.0059 23 6 2.2100 -4.5114 1.0801 24 6 1.8589 -3.6722 -0.1514 25 1 -0.4850 0.8401 -0.0004 26 1 -0.7267 -2.5110 0.5007 27 1 0.0583 -1.4124 1.6622 28 1 -0.5059 -3.5069 2.9378 29 1 2.0837 -5.7793 3.4375 30 1 0.5684 -5.0815 4.0581 31 1 -0.0338 -6.6271 1.7722 32 1 -0.5230 -10.2785 4.6484 33 1 -1.9353 -11.8663 3.0219 34 1 -2.2795 -10.5966 0.7578 35 1 2.3355 -5.5525 0.7830 36 1 3.1429 -4.1472 1.5106 37 1 1.0845 -4.1744 -0.7314 38 1 2.7475 -3.5299 -0.7663 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000438308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:24 Heat of formation + Delta-G solvation = 47.052723 kcal Electronic energy + Delta-G solvation = -20472.373802 eV Core-core repulsion = 17316.400049 eV Total energy + Delta-G solvation = -3155.973753 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.40382 -39.21030 -37.75203 -35.03748 -33.01978 -31.34787 -30.91742 -29.89362 -29.38894 -26.90575 -24.41848 -22.90543 -22.46416 -21.20810 -20.65373 -20.22317 -19.20047 -17.68779 -16.19184 -15.95653 -15.59868 -15.37624 -15.02215 -14.19906 -14.13968 -14.01699 -13.76057 -13.57338 -13.44820 -12.93732 -12.79231 -12.48614 -12.31278 -12.10168 -11.63987 -11.43512 -10.96009 -10.77906 -10.50000 -10.39099 -10.17466 -9.89664 -9.67460 -9.22288 -9.12096 -8.74560 -8.41089 -8.14430 -6.81958 -5.85991 -3.25148 1.34111 2.49516 2.56901 2.90328 3.34469 3.35307 3.41174 3.42530 3.45972 4.44310 4.77701 4.83510 5.06609 5.15172 5.27202 5.28387 5.33476 5.51236 5.75359 5.85482 5.87888 5.96642 6.00453 6.08685 6.24813 6.32759 6.43906 6.51070 6.65116 6.71757 6.78016 7.08269 7.13499 7.17556 7.24669 7.49970 7.65792 7.75129 8.13722 8.31547 9.12965 9.75540 10.33133 11.24505 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.039902 B = 0.003311 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.547080 B = 8454.371381 C = 8656.035516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.000 4.000 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.249 4.249 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.194 3.806 11 C -0.123 4.123 12 C -0.168 4.168 13 C 0.158 3.842 14 N -0.721 5.721 15 C 0.584 3.416 16 O -0.535 6.535 17 C -0.053 4.053 18 C -0.111 4.111 19 C -0.214 4.214 20 C 0.020 3.980 21 N -0.539 5.539 22 H 0.417 0.583 23 C -0.091 4.091 24 C 0.144 3.856 25 H 0.255 0.745 26 H 0.041 0.959 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.395 0.605 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.171 0.829 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.021 0.979 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 -17.689 2.023 18.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.198 4.198 3 Si 0.736 3.264 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.378 4.378 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.069 3.931 11 C -0.144 4.144 12 C -0.169 4.169 13 C 0.036 3.964 14 N -0.371 5.371 15 C 0.371 3.629 16 O -0.412 6.412 17 C -0.166 4.166 18 C -0.137 4.137 19 C -0.239 4.239 20 C -0.116 4.116 21 N -0.135 5.135 22 H 0.255 0.745 23 C -0.130 4.130 24 C 0.018 3.982 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.228 0.772 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.188 0.812 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.196 -17.349 2.746 17.853 hybrid contribution 0.135 1.141 -0.743 1.368 sum -3.061 -16.208 2.003 16.616 Atomic orbital electron populations 1.69992 1.05198 1.25723 1.54596 1.24991 0.95409 0.98348 1.01068 0.86309 0.78835 0.83147 0.78140 1.20898 1.21585 1.21008 1.19144 0.92244 0.84353 1.42044 0.91365 1.44116 1.29208 1.01195 1.57281 1.19769 0.88799 0.94808 0.89752 1.23319 0.95744 0.96619 0.98685 1.20497 1.00017 0.97395 0.98993 1.20494 0.96254 0.84021 0.95649 1.46097 1.57036 1.16446 1.17570 1.17125 0.79357 0.81221 0.85176 1.90833 1.50324 1.81373 1.18641 1.20542 1.09555 0.98892 0.87617 1.21329 1.00416 0.91920 1.00057 1.20904 1.07118 1.01498 0.94331 1.22047 1.02429 0.86190 1.00914 1.42085 1.42677 1.15617 1.13151 0.74521 1.20765 0.96765 0.98950 0.96497 1.20947 0.97342 0.87193 0.92746 0.93497 0.94117 0.88787 0.88717 0.91308 0.91381 0.77185 0.83562 0.83969 0.81222 0.92950 0.91640 0.96060 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.70 11.08 55.49 0.61 -25.08 16 2 C 0.00 0.00 5.01 -17.43 -0.09 -0.09 16 3 Si 0.91 21.41 29.58 -169.99 -5.03 16.38 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.68 9.71 -15.06 -0.15 -6.82 16 8 H 0.07 1.80 7.88 -52.48 -0.41 1.38 16 9 N -0.59 -14.45 3.01 -173.67 -0.52 -14.97 16 10 C 0.19 4.44 5.23 -5.10 -0.03 4.41 16 11 C -0.12 -2.26 9.47 -35.78 -0.34 -2.60 16 12 C -0.17 -2.79 5.23 -101.00 -0.53 -3.32 16 13 C 0.16 2.34 5.66 -5.20 -0.03 2.31 16 14 N -0.72 -9.34 5.54 -62.80 -0.35 -9.69 16 15 C 0.58 8.40 7.79 -12.86 -0.10 8.30 16 16 O -0.53 -9.57 16.88 5.19 0.09 -9.49 16 17 C -0.05 -0.64 7.06 -81.98 -0.58 -1.22 16 18 C -0.11 -1.28 10.65 -39.12 -0.42 -1.70 16 19 C -0.21 -1.95 10.81 -39.98 -0.43 -2.38 16 20 C 0.02 0.16 11.89 -16.91 -0.20 -0.05 16 21 N -0.54 -4.69 5.99 -9.39 -0.06 -4.75 16 22 H 0.42 2.63 8.19 -40.82 -0.33 2.29 16 23 C -0.09 -1.52 5.94 -28.18 -0.17 -1.69 16 24 C 0.14 2.86 6.58 -3.53 -0.02 2.84 16 25 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.09 2.42 6.41 -51.93 -0.33 2.09 16 28 H 0.09 1.57 7.73 -52.48 -0.41 1.17 16 29 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 30 H 0.07 1.05 7.78 -51.93 -0.40 0.64 16 31 H 0.39 4.28 7.59 -40.82 -0.31 3.97 16 32 H 0.15 1.65 8.06 -52.48 -0.42 1.23 16 33 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 1.13 7.96 -51.93 -0.41 0.71 16 LS Contribution 321.14 15.07 4.84 4.84 Total: -1.00 -31.87 321.14 -8.62 -40.49 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.13 Total: 4.27 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -3.08 Total: -2.00 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.31 Total: -54.49 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.87 -8.62 -40.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000438308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.542 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds