Wall clock time and date at job start Mon Mar 30 2020 02:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00137 * 2 1 4 4 H 1.48495 * 109.46984 * 239.99671 * 3 2 1 5 5 H 1.48500 * 109.46904 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47058 * 119.99430 * 3 2 1 7 7 C 1.38810 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00327 * 164.52980 * 7 2 1 9 9 N 1.36939 * 120.00352 * 344.52484 * 7 2 1 10 10 C 1.47010 * 121.37262 * 335.97266 * 9 7 2 11 11 C 1.50319 * 109.16396 * 222.96294 * 10 9 7 12 12 C 1.29457 * 123.65117 * 349.28755 * 11 10 9 13 13 C 1.50694 * 117.69284 * 180.57773 * 12 11 10 14 14 N 1.46502 * 109.47861 * 94.99351 * 13 12 11 15 15 C 1.34772 * 120.00569 * 179.97438 * 14 13 12 16 16 O 1.21694 * 119.99678 * 0.02562 * 15 14 13 17 17 C 1.46677 * 120.00114 * 179.97438 * 15 14 13 18 18 C 1.37873 * 126.23363 * 179.68775 * 17 15 14 19 19 C 1.39829 * 107.08369 * 179.85041 * 18 17 15 20 20 C 1.35453 * 107.86577 * 0.42134 * 19 18 17 21 21 N 1.35526 * 108.87122 * 359.74023 * 20 19 18 22 22 H 0.97002 * 125.67527 * 180.02562 * 21 20 19 23 23 C 1.49964 * 124.61613 * 0.32872 * 12 11 10 24 24 C 1.47338 * 121.37669 * 155.98495 * 9 7 2 25 25 H 0.97002 * 119.99820 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.52256 * 103.05651 * 10 9 7 27 27 H 1.08999 * 109.52111 * 342.87265 * 10 9 7 28 28 H 1.08003 * 118.17335 * 168.99584 * 11 10 9 29 29 H 1.09006 * 109.47402 * 214.99724 * 13 12 11 30 30 H 1.09004 * 109.47463 * 334.99170 * 13 12 11 31 31 H 0.96998 * 119.99289 * 0.02562 * 14 13 12 32 32 H 1.08005 * 126.45328 * 0.02562 * 18 17 15 33 33 H 1.08004 * 126.06673 * 180.15980 * 19 18 17 34 34 H 1.07996 * 125.56192 * 179.72079 * 20 19 18 35 35 H 1.08995 * 109.43781 * 221.06658 * 23 12 11 36 36 H 1.09004 * 109.12988 * 101.67266 * 23 12 11 37 37 H 1.09002 * 109.78070 * 237.79078 * 24 9 7 38 38 H 1.09002 * 109.77840 * 358.60673 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0609 -1.2193 -0.2489 9 7 1.3628 -2.3665 0.3175 10 6 0.1442 -2.3652 1.1398 11 6 0.2243 -3.4823 2.1424 12 6 1.1230 -4.4135 2.1086 13 6 1.0698 -5.4771 3.1748 14 7 0.3296 -6.6368 2.6714 15 6 0.1545 -7.7176 3.4574 16 8 0.6108 -7.7298 4.5855 17 6 -0.5871 -8.8784 2.9536 18 6 -0.8363 -10.0473 3.6410 19 6 -1.5743 -10.8753 2.7895 20 6 -1.7510 -10.2162 1.6194 21 7 -1.1559 -9.0017 1.7061 22 1 -1.1346 -8.3308 1.0059 23 6 2.2100 -4.5114 1.0801 24 6 1.8589 -3.6722 -0.1514 25 1 -0.4850 0.8401 -0.0004 26 1 -0.7267 -2.5110 0.5007 27 1 0.0583 -1.4124 1.6622 28 1 -0.5059 -3.5069 2.9378 29 1 2.0837 -5.7793 3.4375 30 1 0.5684 -5.0815 4.0581 31 1 -0.0338 -6.6271 1.7722 32 1 -0.5230 -10.2785 4.6484 33 1 -1.9353 -11.8663 3.0219 34 1 -2.2795 -10.5966 0.7578 35 1 2.3355 -5.5525 0.7830 36 1 3.1429 -4.1472 1.5106 37 1 1.0845 -4.1744 -0.7314 38 1 2.7475 -3.5299 -0.7663 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000438308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:23 Heat of formation + Delta-G solvation = 25.856407 kcal Electronic energy + Delta-G solvation = -20473.292943 eV Core-core repulsion = 17316.400049 eV Total energy + Delta-G solvation = -3156.892894 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.18823 -40.35399 -39.26135 -36.48601 -34.62636 -32.77871 -31.92009 -31.47540 -30.39017 -28.41764 -26.03019 -24.46716 -23.60675 -22.75263 -21.43295 -21.05972 -20.18554 -19.45857 -17.58040 -17.14602 -17.06471 -16.60143 -16.45369 -15.69273 -15.45636 -15.25307 -14.98051 -14.85717 -14.56342 -14.34430 -13.96782 -13.64693 -13.52417 -13.30095 -13.17538 -12.94435 -12.78967 -12.60520 -12.27912 -12.14381 -11.73618 -11.42149 -11.24985 -10.69879 -10.28089 -9.94534 -9.70549 -9.17332 -8.77161 -7.90339 -5.31495 0.46135 1.11819 1.46402 1.49082 1.55297 1.85869 2.18676 2.35672 2.36867 2.49978 3.27022 3.58622 3.78775 3.92492 3.94301 4.34891 4.39876 4.43912 4.49951 4.51967 4.63324 4.70983 4.80220 4.88402 5.06570 5.12514 5.18501 5.24872 5.29046 5.37206 5.45263 5.59591 5.71856 5.76911 5.94729 6.12090 6.32095 6.42587 6.60377 7.07492 7.11797 7.81700 8.34979 9.18044 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.039902 B = 0.003311 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.547080 B = 8454.371381 C = 8656.035516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.053 4.053 3 Si 0.967 3.033 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.281 1.281 7 C -0.259 4.259 8 H 0.070 0.930 9 N -0.615 5.615 10 C 0.205 3.795 11 C -0.140 4.140 12 C -0.140 4.140 13 C 0.167 3.833 14 N -0.711 5.711 15 C 0.585 3.415 16 O -0.579 6.579 17 C -0.084 4.084 18 C -0.125 4.125 19 C -0.229 4.229 20 C 0.045 3.955 21 N -0.530 5.530 22 H 0.429 0.571 23 C -0.085 4.085 24 C 0.139 3.861 25 H 0.250 0.750 26 H 0.016 0.984 27 H 0.057 0.943 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.407 0.593 32 H 0.137 0.863 33 H 0.163 0.837 34 H 0.213 0.787 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.030 0.970 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.347 -19.712 1.173 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.248 4.248 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.389 4.389 8 H 0.088 0.912 9 N -0.339 5.339 10 C 0.080 3.920 11 C -0.160 4.160 12 C -0.141 4.141 13 C 0.044 3.956 14 N -0.361 5.361 15 C 0.374 3.626 16 O -0.459 6.459 17 C -0.197 4.197 18 C -0.153 4.153 19 C -0.252 4.252 20 C -0.092 4.092 21 N -0.127 5.127 22 H 0.269 0.731 23 C -0.123 4.123 24 C 0.014 3.986 25 H 0.059 0.941 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.130 0.870 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.243 0.757 32 H 0.155 0.845 33 H 0.181 0.819 34 H 0.230 0.770 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.054 -19.386 1.856 19.713 hybrid contribution 0.086 1.624 -0.540 1.714 sum -2.968 -17.762 1.316 18.057 Atomic orbital electron populations 1.70148 1.06455 1.25888 1.56005 1.25723 0.96170 1.01295 1.01569 0.85339 0.77537 0.79329 0.78250 1.20042 1.22034 1.20724 1.19481 0.92577 0.85669 1.41215 0.91218 1.44398 1.29404 1.02167 1.57970 1.19408 0.87779 0.94880 0.89944 1.22978 0.98004 0.96118 0.98909 1.20582 0.98361 0.96653 0.98461 1.20274 0.96662 0.83943 0.94678 1.45870 1.56636 1.15568 1.18044 1.17409 0.78833 0.81750 0.84567 1.90804 1.52349 1.82271 1.20516 1.20181 1.11663 0.98374 0.89443 1.21532 1.00878 0.92611 1.00254 1.21226 1.07135 1.02416 0.94447 1.22763 1.00105 0.84907 1.01447 1.42092 1.41934 1.16373 1.12270 0.73115 1.20706 0.96345 1.00327 0.94959 1.21141 0.97464 0.85722 0.94271 0.94090 0.96603 0.92498 0.87016 0.91094 0.91843 0.75716 0.84539 0.81947 0.77032 0.89368 0.91882 0.95194 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.55 11.08 21.65 0.24 -54.31 16 2 C -0.05 -2.90 5.01 84.86 0.43 -2.48 16 3 Si 0.97 44.53 29.58 68.60 2.03 46.56 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 7 C -0.26 -14.06 9.71 84.03 0.82 -13.24 16 8 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 9 N -0.62 -30.07 3.01 -703.36 -2.12 -32.19 16 10 C 0.20 9.64 5.23 85.42 0.45 10.09 16 11 C -0.14 -5.07 9.47 27.10 0.26 -4.81 16 12 C -0.14 -4.39 5.23 -15.14 -0.08 -4.47 16 13 C 0.17 4.65 5.66 85.63 0.48 5.14 16 14 N -0.71 -17.05 5.54 -470.82 -2.61 -19.66 16 15 C 0.58 16.27 7.79 86.45 0.67 16.94 16 16 O -0.58 -20.77 16.88 -4.33 -0.07 -20.84 16 17 C -0.08 -1.89 7.06 40.35 0.28 -1.61 16 18 C -0.13 -2.77 10.65 22.57 0.24 -2.53 16 19 C -0.23 -3.54 10.81 22.01 0.24 -3.30 16 20 C 0.04 0.51 11.89 83.48 0.99 1.50 16 21 N -0.53 -7.61 5.99 -183.63 -1.10 -8.71 16 22 H 0.43 3.95 8.19 -92.71 -0.76 3.19 16 23 C -0.08 -2.63 5.94 29.65 0.18 -2.45 16 24 C 0.14 5.33 6.58 86.25 0.57 5.90 16 25 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 26 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.06 3.07 6.41 -2.39 -0.02 3.05 16 28 H 0.11 3.65 7.73 -2.91 -0.02 3.63 16 29 H 0.07 2.00 8.11 -2.38 -0.02 1.98 16 30 H 0.06 1.87 7.78 -2.39 -0.02 1.85 16 31 H 0.41 7.75 7.59 -92.71 -0.70 7.04 16 32 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.21 0.58 8.06 -2.91 -0.02 0.55 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.06 2.24 7.96 -2.39 -0.02 2.22 16 Total: -1.00 -70.88 321.14 1.51 -69.37 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -0.38 Total: 15.08 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 5.52 Total: 4.69 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -5.59 Total: -114.86 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.07 Total: -20.84 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -70.88 1.51 -69.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000438308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.227 kcal (2) G-P(sol) polarization free energy of solvation -70.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds