Wall clock time and date at job start Mon Mar 30 2020 01:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86796 * 120.00276 * 2 1 4 4 H 1.48503 * 109.47398 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47140 * 299.99945 * 3 2 1 6 6 H 1.48499 * 109.47229 * 60.00112 * 3 2 1 7 7 C 1.38811 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00172 * 197.36216 * 7 2 1 9 9 N 1.36935 * 120.00027 * 17.35751 * 7 2 1 10 10 C 1.46931 * 120.63238 * 207.67375 * 9 7 2 11 11 C 1.53185 * 108.77567 * 233.62998 * 10 9 7 12 12 C 1.53038 * 109.34212 * 305.34949 * 11 10 9 13 13 C 1.53102 * 109.50158 * 61.34719 * 12 11 10 14 14 H 1.08995 * 109.48999 * 58.61751 * 13 12 11 15 15 N 1.46507 * 109.51450 * 178.68713 * 13 12 11 16 16 C 1.34773 * 120.00174 * 204.87075 * 15 13 12 17 17 O 1.21515 * 119.99942 * 359.97438 * 16 15 13 18 18 C 1.48162 * 120.00259 * 179.97438 * 16 15 13 19 19 C 1.39305 * 119.72787 * 179.73003 * 18 16 15 20 20 C 1.38588 * 119.06299 * 179.75410 * 19 18 16 21 21 C 1.38628 * 118.48575 * 0.51129 * 20 19 18 22 22 C 1.38549 * 119.35197 * 359.72577 * 21 20 19 23 23 N 1.31529 * 120.90583 * 0.02562 * 22 21 20 24 24 C 1.46923 * 120.63187 * 27.69768 * 9 7 2 25 25 H 0.97007 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.58661 * 113.83857 * 10 9 7 27 27 H 1.09000 * 109.69996 * 353.48954 * 10 9 7 28 28 H 1.08997 * 109.49998 * 65.31977 * 11 10 9 29 29 H 1.09000 * 109.49473 * 185.37906 * 11 10 9 30 30 H 1.09000 * 109.46297 * 181.40474 * 12 11 10 31 31 H 1.09009 * 109.45818 * 301.35965 * 12 11 10 32 32 H 0.96999 * 119.99484 * 24.86914 * 15 13 12 33 33 H 1.08004 * 120.46795 * 359.97048 * 19 18 16 34 34 H 1.08005 * 120.75789 * 180.23796 * 20 19 18 35 35 H 1.08000 * 120.31849 * 179.70866 * 21 20 19 36 36 H 1.08004 * 119.55133 * 180.02562 * 22 21 20 37 37 H 1.09005 * 109.58431 * 246.15963 * 24 9 7 38 38 H 1.09004 * 109.58591 * 6.57541 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0101 -1.2021 -0.0005 8 1 3.0533 -1.2236 0.2786 9 7 1.3722 -2.3609 -0.3548 10 6 1.8193 -3.6549 0.1786 11 6 2.0750 -4.6090 -0.9922 12 6 0.8198 -4.6892 -1.8641 13 6 0.5016 -3.3030 -2.4306 14 1 1.3502 -2.9445 -3.0131 15 7 -0.6817 -3.3855 -3.2904 16 6 -0.8689 -2.4772 -4.2683 17 8 -0.0563 -1.5894 -4.4366 18 6 -2.0653 -2.5610 -5.1383 19 6 -2.2558 -1.6158 -6.1437 20 6 -3.3771 -1.7102 -6.9528 21 6 -4.2747 -2.7410 -6.7210 22 6 -4.0241 -3.6429 -5.6996 23 7 -2.9492 -3.5328 -4.9497 24 6 0.2280 -2.3339 -1.2761 25 1 -0.4850 0.8401 0.0004 26 1 1.0469 -4.0697 0.8262 27 1 2.7392 -3.5197 0.7475 28 1 2.9089 -4.2384 -1.5882 29 1 2.3150 -5.6004 -0.6078 30 1 0.9911 -5.3869 -2.6839 31 1 -0.0194 -5.0365 -1.2613 32 1 -1.3305 -4.0939 -3.1559 33 1 -1.5381 -0.8226 -6.2929 34 1 -3.5500 -0.9945 -7.7429 35 1 -5.1607 -2.8397 -7.3307 36 1 -4.7211 -4.4474 -5.5165 37 1 -0.6742 -2.6411 -0.7471 38 1 0.0985 -1.3253 -1.6684 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006580380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:47 Heat of formation + Delta-G solvation = 20.753860 kcal Electronic energy + Delta-G solvation = -21186.008680 eV Core-core repulsion = 18028.894523 eV Total energy + Delta-G solvation = -3157.114157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50170 -38.88296 -37.16583 -34.14628 -32.88616 -32.40111 -31.46901 -29.98241 -28.74014 -25.22720 -24.67749 -23.55901 -22.18767 -21.82338 -20.16725 -19.37808 -17.82815 -16.79978 -16.60676 -16.03129 -15.23219 -15.01592 -14.82716 -14.54282 -13.99363 -13.69942 -13.58069 -13.36872 -13.20333 -12.89475 -12.34553 -12.26805 -12.07302 -11.81770 -10.98659 -10.73674 -10.69035 -10.44369 -10.20295 -10.09944 -10.08076 -9.89986 -9.85891 -9.49483 -9.35485 -9.27582 -8.47279 -8.39369 -6.61636 -5.71568 -3.14673 0.63438 1.10346 2.98946 3.42683 3.46866 3.52696 3.54435 3.95238 4.18057 4.57383 4.64723 4.81612 4.86229 4.97595 5.34148 5.40818 5.45124 5.59178 5.61385 5.67223 5.74465 5.88095 5.98624 6.12530 6.20957 6.37775 6.45561 6.47261 6.54723 6.74750 6.81726 6.97997 7.01111 7.34207 7.62337 7.77353 7.87396 8.03428 8.51686 8.63125 9.26890 9.91181 10.46151 11.36427 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018383 B = 0.005346 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.745538 B = 5236.790535 C = 6324.996065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.256 4.256 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.115 3.885 14 H 0.083 0.917 15 N -0.698 5.698 16 C 0.563 3.437 17 O -0.526 6.526 18 C 0.090 3.910 19 C -0.114 4.114 20 C -0.083 4.083 21 C -0.159 4.159 22 C 0.095 3.905 23 N -0.460 5.460 24 C 0.166 3.834 25 H 0.253 0.747 26 H 0.018 0.982 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.403 0.597 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.161 0.839 37 H 0.018 0.982 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.884 -9.175 -12.443 17.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.218 1.218 7 C -0.385 4.385 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.170 4.170 12 C -0.154 4.154 13 C 0.009 3.991 14 H 0.101 0.899 15 N -0.347 5.347 16 C 0.346 3.654 17 O -0.401 6.401 18 C -0.049 4.049 19 C -0.135 4.135 20 C -0.109 4.109 21 C -0.179 4.179 22 C -0.064 4.064 23 N -0.172 5.172 24 C 0.039 3.961 25 H 0.063 0.937 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.238 0.762 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.178 0.822 37 H 0.036 0.964 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.178 -8.976 -11.824 16.490 hybrid contribution -0.314 1.122 -0.684 1.351 sum -7.492 -7.854 -12.509 16.562 Atomic orbital electron populations 1.70033 1.05365 1.25398 1.53509 1.25030 0.95246 0.98488 1.00543 0.86244 0.79427 0.84012 0.77212 1.20174 1.21448 1.21778 1.19201 0.92764 0.84844 1.41712 0.91515 1.43975 1.36034 1.01638 1.49490 1.20954 0.97717 0.86860 0.92886 1.22000 0.96958 0.99340 0.98748 1.21682 0.98954 0.95923 0.98826 1.22061 0.86897 0.97112 0.92983 0.89904 1.45919 1.26111 1.30389 1.32326 1.17821 0.84479 0.82465 0.80601 1.90827 1.44407 1.34094 1.70801 1.21412 0.94937 0.92693 0.95814 1.22194 0.98147 0.99100 0.94065 1.21624 0.93250 0.97529 0.98464 1.22331 1.00414 0.95891 0.99252 1.22791 0.94081 0.98167 0.91388 1.67585 1.02509 1.21000 1.26070 1.21101 0.88784 0.98942 0.87231 0.93732 0.96388 0.92619 0.92111 0.92594 0.93016 0.92136 0.76226 0.83336 0.84222 0.84456 0.82209 0.96374 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 11.19 55.49 0.62 -26.76 16 2 C 0.01 0.17 4.91 -17.43 -0.09 0.09 16 3 Si 0.90 22.81 29.59 -169.99 -5.03 17.78 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.26 -7.31 9.59 -15.06 -0.14 -7.46 16 8 H 0.07 1.86 7.89 -52.48 -0.41 1.45 16 9 N -0.59 -15.33 2.99 -172.32 -0.52 -15.84 16 10 C 0.14 3.02 6.51 -3.71 -0.02 2.99 16 11 C -0.13 -2.28 6.08 -26.62 -0.16 -2.44 16 12 C -0.12 -1.96 5.36 -26.66 -0.14 -2.11 16 13 C 0.11 2.35 2.60 -67.78 -0.18 2.18 16 14 H 0.08 1.89 7.58 -51.93 -0.39 1.50 16 15 N -0.70 -12.74 5.07 -54.50 -0.28 -13.01 16 16 C 0.56 10.86 7.78 -12.19 -0.09 10.77 16 17 O -0.53 -12.08 15.99 5.35 0.09 -11.99 16 18 C 0.09 1.41 6.75 -83.01 -0.56 0.85 16 19 C -0.11 -1.53 9.63 -39.06 -0.38 -1.91 16 20 C -0.08 -0.81 10.17 -39.31 -0.40 -1.21 16 21 C -0.16 -1.36 10.11 -39.32 -0.40 -1.76 16 22 C 0.10 0.97 11.18 -17.57 -0.20 0.77 16 23 N -0.46 -6.35 9.54 -9.80 -0.09 -6.45 16 24 C 0.17 4.21 4.89 -3.71 -0.02 4.19 16 25 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 32 H 0.40 6.39 7.93 -40.82 -0.32 6.07 16 33 H 0.15 2.00 7.64 -52.48 -0.40 1.60 16 34 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.16 1.10 8.06 -52.48 -0.42 0.67 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 2.81 6.04 -51.93 -0.31 2.49 16 LS Contribution 317.60 15.07 4.79 4.79 Total: -1.00 -34.00 317.60 -8.40 -42.40 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.20 Total: 4.13 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -2.78 Total: 4.96 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: -0.27 Total: -62.07 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.03 Total: 17.78 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.00 -8.40 -42.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006580380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.154 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds