Wall clock time and date at job start Mon Mar 30 2020 01:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86796 * 120.00276 * 2 1 4 4 H 1.48503 * 109.47398 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47140 * 299.99945 * 3 2 1 6 6 H 1.48499 * 109.47229 * 60.00112 * 3 2 1 7 7 C 1.38811 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00172 * 197.36216 * 7 2 1 9 9 N 1.36935 * 120.00027 * 17.35751 * 7 2 1 10 10 C 1.46931 * 120.63238 * 207.67375 * 9 7 2 11 11 C 1.53185 * 108.77567 * 233.62998 * 10 9 7 12 12 C 1.53038 * 109.34212 * 305.34949 * 11 10 9 13 13 C 1.53102 * 109.50158 * 61.34719 * 12 11 10 14 14 H 1.08995 * 109.48999 * 58.61751 * 13 12 11 15 15 N 1.46507 * 109.51450 * 178.68713 * 13 12 11 16 16 C 1.34773 * 120.00174 * 204.87075 * 15 13 12 17 17 O 1.21515 * 119.99942 * 359.97438 * 16 15 13 18 18 C 1.48162 * 120.00259 * 179.97438 * 16 15 13 19 19 C 1.39305 * 119.72787 * 179.73003 * 18 16 15 20 20 C 1.38588 * 119.06299 * 179.75410 * 19 18 16 21 21 C 1.38628 * 118.48575 * 0.51129 * 20 19 18 22 22 C 1.38549 * 119.35197 * 359.72577 * 21 20 19 23 23 N 1.31529 * 120.90583 * 0.02562 * 22 21 20 24 24 C 1.46923 * 120.63187 * 27.69768 * 9 7 2 25 25 H 0.97007 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.58661 * 113.83857 * 10 9 7 27 27 H 1.09000 * 109.69996 * 353.48954 * 10 9 7 28 28 H 1.08997 * 109.49998 * 65.31977 * 11 10 9 29 29 H 1.09000 * 109.49473 * 185.37906 * 11 10 9 30 30 H 1.09000 * 109.46297 * 181.40474 * 12 11 10 31 31 H 1.09009 * 109.45818 * 301.35965 * 12 11 10 32 32 H 0.96999 * 119.99484 * 24.86914 * 15 13 12 33 33 H 1.08004 * 120.46795 * 359.97048 * 19 18 16 34 34 H 1.08005 * 120.75789 * 180.23796 * 20 19 18 35 35 H 1.08000 * 120.31849 * 179.70866 * 21 20 19 36 36 H 1.08004 * 119.55133 * 180.02562 * 22 21 20 37 37 H 1.09005 * 109.58431 * 246.15963 * 24 9 7 38 38 H 1.09004 * 109.58591 * 6.57541 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0101 -1.2021 -0.0005 8 1 3.0533 -1.2236 0.2786 9 7 1.3722 -2.3609 -0.3548 10 6 1.8193 -3.6549 0.1786 11 6 2.0750 -4.6090 -0.9922 12 6 0.8198 -4.6892 -1.8641 13 6 0.5016 -3.3030 -2.4306 14 1 1.3502 -2.9445 -3.0131 15 7 -0.6817 -3.3855 -3.2904 16 6 -0.8689 -2.4772 -4.2683 17 8 -0.0563 -1.5894 -4.4366 18 6 -2.0653 -2.5610 -5.1383 19 6 -2.2558 -1.6158 -6.1437 20 6 -3.3771 -1.7102 -6.9528 21 6 -4.2747 -2.7410 -6.7210 22 6 -4.0241 -3.6429 -5.6996 23 7 -2.9492 -3.5328 -4.9497 24 6 0.2280 -2.3339 -1.2761 25 1 -0.4850 0.8401 0.0004 26 1 1.0469 -4.0697 0.8262 27 1 2.7392 -3.5197 0.7475 28 1 2.9089 -4.2384 -1.5882 29 1 2.3150 -5.6004 -0.6078 30 1 0.9911 -5.3869 -2.6839 31 1 -0.0194 -5.0365 -1.2613 32 1 -1.3305 -4.0939 -3.1559 33 1 -1.5381 -0.8226 -6.2929 34 1 -3.5500 -0.9945 -7.7429 35 1 -5.1607 -2.8397 -7.3307 36 1 -4.7211 -4.4474 -5.5165 37 1 -0.6742 -2.6411 -0.7471 38 1 0.0985 -1.3253 -1.6684 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006580380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:46 Heat of formation + Delta-G solvation = -3.698599 kcal Electronic energy + Delta-G solvation = -21187.069018 eV Core-core repulsion = 18028.894523 eV Total energy + Delta-G solvation = -3158.174495 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.63171 -40.26413 -38.85662 -35.89473 -34.53695 -33.52087 -32.49690 -31.89905 -30.37631 -27.27581 -25.84774 -24.44164 -23.97252 -23.37625 -21.63000 -21.04979 -19.10900 -18.75837 -17.77197 -17.16135 -16.79609 -16.48496 -16.18133 -15.98058 -15.67224 -15.32203 -14.99226 -14.86463 -14.40525 -14.20376 -14.07031 -14.00595 -13.50580 -12.97909 -12.90338 -12.68429 -12.53613 -12.28699 -12.05552 -11.74787 -11.66246 -11.29973 -11.27225 -10.95487 -10.59619 -10.53456 -10.30654 -10.04915 -8.72557 -7.91487 -5.37574 -0.35404 0.26853 1.39146 1.43709 1.52803 1.72608 2.07566 2.47616 2.88757 3.12860 3.25778 3.69819 3.85076 3.94108 3.97727 4.05659 4.10269 4.11218 4.24536 4.45146 4.50423 4.59111 4.77565 4.79787 4.90160 5.06003 5.07369 5.15127 5.18430 5.19762 5.29356 5.40314 5.50559 5.59566 5.65376 5.73119 6.32845 6.44922 6.82870 7.08269 7.19201 7.81985 8.31859 9.13851 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018383 B = 0.005346 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.745538 B = 5236.790535 C = 6324.996065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.052 4.052 3 Si 0.963 3.037 4 H -0.261 1.261 5 H -0.298 1.298 6 H -0.285 1.285 7 C -0.265 4.265 8 H 0.071 0.929 9 N -0.610 5.610 10 C 0.135 3.865 11 C -0.120 4.120 12 C -0.107 4.107 13 C 0.128 3.872 14 H 0.055 0.945 15 N -0.690 5.690 16 C 0.555 3.445 17 O -0.578 6.578 18 C 0.054 3.946 19 C -0.129 4.129 20 C -0.078 4.078 21 C -0.133 4.133 22 C 0.090 3.910 23 N -0.479 5.479 24 C 0.180 3.820 25 H 0.247 0.753 26 H 0.021 0.979 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.416 0.584 33 H 0.133 0.867 34 H 0.175 0.825 35 H 0.186 0.814 36 H 0.198 0.802 37 H -0.003 1.003 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.218 -11.278 -14.010 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.247 4.247 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.225 1.225 6 H -0.211 1.211 7 C -0.395 4.395 8 H 0.089 0.911 9 N -0.333 5.333 10 C 0.010 3.990 11 C -0.160 4.160 12 C -0.145 4.145 13 C 0.022 3.978 14 H 0.073 0.927 15 N -0.340 5.340 16 C 0.341 3.659 17 O -0.457 6.457 18 C -0.082 4.082 19 C -0.151 4.151 20 C -0.104 4.104 21 C -0.152 4.152 22 C -0.070 4.070 23 N -0.191 5.191 24 C 0.053 3.947 25 H 0.056 0.944 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.253 0.747 33 H 0.151 0.849 34 H 0.193 0.807 35 H 0.203 0.797 36 H 0.215 0.785 37 H 0.015 0.985 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.503 -11.137 -13.379 19.373 hybrid contribution -0.035 1.712 -0.256 1.732 sum -8.538 -9.425 -13.635 18.644 Atomic orbital electron populations 1.70194 1.06866 1.25567 1.55304 1.25826 0.96026 1.01747 1.01136 0.85263 0.78999 0.79952 0.76654 1.18495 1.22537 1.21129 1.19583 0.93160 0.86190 1.40576 0.91100 1.44262 1.35916 1.02851 1.50311 1.21192 0.97662 0.85501 0.94645 1.21901 0.96764 1.00307 0.96990 1.21658 0.99270 0.93666 0.99870 1.21639 0.86762 0.98356 0.91057 0.92716 1.45785 1.25779 1.30674 1.31763 1.18543 0.85207 0.81377 0.80725 1.90776 1.46637 1.35999 1.72336 1.20874 0.94922 0.95364 0.97040 1.22255 0.99652 0.98498 0.94664 1.22050 0.91647 0.98509 0.98151 1.22885 1.00792 0.93594 0.97978 1.23552 0.93166 0.99341 0.90972 1.67491 1.03477 1.20655 1.27462 1.20761 0.88137 0.97445 0.88387 0.94420 0.96065 0.92317 0.92820 0.88186 0.89683 0.90865 0.74671 0.84911 0.80710 0.79662 0.78514 0.98462 0.93793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.87 11.19 21.65 0.24 -59.63 16 2 C -0.05 -3.14 4.91 84.86 0.42 -2.73 16 3 Si 0.96 48.60 29.59 68.60 2.03 50.63 16 4 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 6 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 7 C -0.26 -15.63 9.59 84.03 0.81 -14.82 16 8 H 0.07 4.02 7.89 -2.91 -0.02 4.00 16 9 N -0.61 -32.74 2.99 -699.10 -2.09 -34.83 16 10 C 0.13 5.66 6.51 86.36 0.56 6.22 16 11 C -0.12 -3.92 6.08 30.67 0.19 -3.74 16 12 C -0.11 -3.43 5.36 30.64 0.16 -3.27 16 13 C 0.13 5.42 2.60 45.09 0.12 5.54 16 14 H 0.05 2.63 7.58 -2.39 -0.02 2.62 16 15 N -0.69 -26.16 5.07 -444.64 -2.25 -28.41 16 16 C 0.56 22.84 7.78 86.88 0.68 23.52 16 17 O -0.58 -28.89 15.99 -3.76 -0.06 -28.95 16 18 C 0.05 1.76 6.75 41.91 0.28 2.04 16 19 C -0.13 -3.51 9.63 22.61 0.22 -3.29 16 20 C -0.08 -1.30 10.17 22.45 0.23 -1.07 16 21 C -0.13 -1.67 10.11 22.44 0.23 -1.45 16 22 C 0.09 1.52 11.18 84.81 0.95 2.47 16 23 N -0.48 -12.73 9.54 -184.92 -1.76 -14.50 16 24 C 0.18 9.59 4.89 86.36 0.42 10.02 16 25 H 0.25 15.37 8.31 -92.70 -0.77 14.60 16 26 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 2.38 7.94 -2.39 -0.02 2.37 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.42 13.31 7.93 -92.71 -0.74 12.57 16 33 H 0.13 3.89 7.64 -2.91 -0.02 3.87 16 34 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.19 0.63 8.06 -2.91 -0.02 0.61 16 36 H 0.20 1.76 8.06 -2.91 -0.02 1.73 16 37 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 38 H 0.04 2.79 6.04 -2.39 -0.01 2.77 16 Total: -1.00 -81.39 317.60 1.68 -79.71 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.33 Total: 16.56 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 5.25 Total: 19.43 kcal Atomic # 7 Polarization: -131.50 SS G_CDS: -5.87 Total: -137.37 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.06 Total: -28.95 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.03 Total: 50.63 kcal Total: -81.39 1.68 -79.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006580380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.010 kcal (2) G-P(sol) polarization free energy of solvation -81.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds