Wall clock time and date at job start Mon Mar 30 2020 01:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99852 * 2 1 4 4 H 1.48493 * 109.47179 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47343 * 240.00188 * 3 2 1 6 6 H 1.48505 * 109.46857 * 120.00511 * 3 2 1 7 7 C 1.38814 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00058 * 204.22080 * 7 2 1 9 9 N 1.36943 * 119.99794 * 24.22367 * 7 2 1 10 10 C 1.46930 * 120.63047 * 29.24542 * 9 7 2 11 11 C 1.53187 * 108.77447 * 126.36972 * 10 9 7 12 12 C 1.53044 * 109.31450 * 54.63251 * 11 10 9 13 13 C 1.53042 * 109.53662 * 298.63496 * 12 11 10 14 14 H 1.08994 * 109.49521 * 301.38128 * 13 12 11 15 15 N 1.46499 * 109.49455 * 181.31498 * 13 12 11 16 16 C 1.34778 * 119.99533 * 154.99917 * 15 13 12 17 17 O 1.21507 * 120.00732 * 359.97438 * 16 15 13 18 18 C 1.48179 * 119.99498 * 180.02562 * 16 15 13 19 19 C 1.39310 * 119.72133 * 179.97438 * 18 16 15 20 20 C 1.38590 * 119.05927 * 179.97438 * 19 18 16 21 21 C 1.38629 * 118.48540 * 0.02562 * 20 19 18 22 22 C 1.38556 * 119.35747 * 359.97438 * 21 20 19 23 23 N 1.31525 * 120.89906 * 359.74076 * 22 21 20 24 24 C 1.46926 * 120.62610 * 208.96279 * 9 7 2 25 25 H 0.96998 * 119.99374 * 185.77013 * 1 2 3 26 26 H 1.09001 * 109.58218 * 246.15690 * 10 9 7 27 27 H 1.08998 * 109.58258 * 6.43678 * 10 9 7 28 28 H 1.09001 * 109.49858 * 174.58638 * 11 10 9 29 29 H 1.09006 * 109.49530 * 294.67981 * 11 10 9 30 30 H 1.09002 * 109.45884 * 58.65430 * 12 11 10 31 31 H 1.08992 * 109.45705 * 178.62592 * 12 11 10 32 32 H 0.97000 * 120.00026 * 335.00171 * 15 13 12 33 33 H 1.08001 * 120.46672 * 359.97438 * 19 18 16 34 34 H 1.07995 * 120.75374 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.31961 * 180.02562 * 21 20 19 36 36 H 1.07994 * 119.55075 * 180.02562 * 22 21 20 37 37 H 1.08991 * 109.58972 * 353.42219 * 24 9 7 38 38 H 1.09000 * 109.58442 * 113.84695 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6965 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0190 -1.2434 0.3831 9 7 1.4161 -2.3357 -0.4877 10 6 0.3974 -2.2524 -1.5432 11 6 0.8093 -3.1691 -2.6993 12 6 1.0461 -4.5833 -2.1644 13 6 2.1818 -4.5591 -1.1389 14 1 3.0863 -4.1707 -1.6069 15 7 2.4287 -5.9181 -0.6507 16 6 3.6400 -6.2483 -0.1606 17 8 4.5275 -5.4191 -0.1242 18 6 3.8899 -7.6231 0.3327 19 6 5.1443 -7.9584 0.8376 20 6 5.3627 -9.2479 1.2958 21 6 4.3188 -10.1578 1.2326 22 6 3.0970 -9.7551 0.7179 23 7 2.9152 -8.5231 0.2950 24 6 1.7895 -3.6586 0.0310 25 1 -0.4849 -0.8358 0.0845 26 1 -0.5660 -2.5739 -1.1474 27 1 0.3221 -1.2245 -1.8980 28 1 0.0162 -3.1908 -3.4467 29 1 1.7267 -2.7932 -3.1525 30 1 0.1357 -4.9490 -1.6894 31 1 1.3156 -5.2430 -2.9891 32 1 1.7204 -6.5802 -0.6801 33 1 5.9352 -7.2237 0.8714 34 1 6.3244 -9.5374 1.6930 35 1 4.4562 -11.1705 1.5818 36 1 2.2814 -10.4613 0.6676 37 1 2.6341 -3.5588 0.7127 38 1 0.9420 -4.0971 0.5578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006580381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:50 Heat of formation + Delta-G solvation = 16.983180 kcal Electronic energy + Delta-G solvation = -20933.002253 eV Core-core repulsion = 17775.724587 eV Total energy + Delta-G solvation = -3157.277666 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.69613 -39.13120 -37.41605 -34.53214 -33.03665 -32.32571 -31.59417 -30.36806 -28.66911 -25.07734 -24.82511 -23.72047 -22.34259 -21.88218 -20.39653 -19.47043 -17.99348 -17.35188 -16.86008 -16.18812 -15.42445 -15.13727 -15.03463 -14.33495 -14.16856 -13.87943 -13.70213 -13.52778 -13.41319 -13.17858 -12.67468 -12.33893 -12.18704 -11.97181 -11.17257 -10.73670 -10.66956 -10.35491 -10.25890 -10.24690 -10.03911 -9.99412 -9.94375 -9.58316 -9.45456 -9.28093 -8.86151 -8.27095 -6.83454 -6.01744 -3.19835 0.45756 0.94406 2.76927 3.20875 3.55268 3.57944 3.74732 3.76173 3.99932 4.50857 4.60501 4.68691 4.71122 4.80972 5.16667 5.23540 5.35396 5.42081 5.45606 5.60256 5.65328 5.71895 5.82518 5.97547 6.08520 6.17687 6.29941 6.42007 6.46999 6.59322 6.61540 6.74648 6.91585 7.09423 7.21210 7.43418 7.78869 8.08928 8.36412 8.63416 9.16152 9.89529 10.32508 11.26473 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029352 B = 0.004028 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.719333 B = 6949.695255 C = 7513.235455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.023 4.023 3 Si 1.065 2.935 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.348 4.348 8 H 0.056 0.944 9 N -0.594 5.594 10 C 0.147 3.853 11 C -0.134 4.134 12 C -0.115 4.115 13 C 0.124 3.876 14 H 0.088 0.912 15 N -0.700 5.700 16 C 0.564 3.436 17 O -0.529 6.529 18 C 0.086 3.914 19 C -0.114 4.114 20 C -0.082 4.082 21 C -0.156 4.156 22 C 0.096 3.904 23 N -0.460 5.460 24 C 0.144 3.856 25 H 0.268 0.732 26 H 0.018 0.982 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.405 0.595 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.162 0.838 37 H 0.059 0.941 38 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.817 -20.933 -0.699 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.225 4.225 3 Si 0.895 3.105 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.477 4.477 8 H 0.074 0.926 9 N -0.318 5.318 10 C 0.022 3.978 11 C -0.174 4.174 12 C -0.153 4.153 13 C 0.019 3.981 14 H 0.106 0.894 15 N -0.350 5.350 16 C 0.348 3.652 17 O -0.404 6.404 18 C -0.053 4.053 19 C -0.134 4.134 20 C -0.108 4.108 21 C -0.176 4.176 22 C -0.063 4.063 23 N -0.172 5.172 24 C 0.017 3.983 25 H 0.079 0.921 26 H 0.036 0.964 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.241 0.759 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.179 0.821 37 H 0.078 0.922 38 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 5.468 -18.323 -1.073 19.152 hybrid contribution 0.686 -2.518 0.517 2.660 sum 6.153 -20.841 -0.556 21.737 Atomic orbital electron populations 1.70783 1.06564 1.30265 1.48109 1.25873 0.96540 1.01436 0.98646 0.83521 0.74751 0.75926 0.76294 1.21116 1.21992 1.21961 1.20011 0.97158 0.88126 1.42407 0.92582 1.44047 1.46652 1.01085 1.40041 1.21005 0.90553 0.99024 0.87259 1.22059 1.01188 0.94754 0.99354 1.21670 0.97693 0.98377 0.97554 1.21701 0.99244 0.80480 0.96684 0.89416 1.45972 1.12938 1.14138 1.61974 1.17875 0.83218 0.85754 0.78374 1.90820 1.44277 1.49771 1.55562 1.21348 0.90899 0.94233 0.98775 1.22193 0.97834 0.97390 0.96024 1.21643 0.99704 0.92741 0.96729 1.22365 0.94384 1.01077 0.99795 1.22809 0.96725 0.92364 0.94430 1.67575 1.32810 1.02492 1.14293 1.21097 0.97806 0.86370 0.93067 0.92093 0.96415 0.90141 0.92431 0.92035 0.92093 0.92700 0.75937 0.83303 0.84099 0.84318 0.82089 0.92215 0.96584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.89 12.45 55.49 0.69 -27.19 16 2 C -0.02 -0.67 4.69 -17.43 -0.08 -0.75 16 3 Si 1.07 25.96 29.98 -169.99 -5.10 20.86 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.35 -10.13 9.48 -15.06 -0.14 -10.27 16 8 H 0.06 1.67 7.94 -52.49 -0.42 1.26 16 9 N -0.59 -15.48 2.84 -172.59 -0.49 -15.97 16 10 C 0.15 3.48 4.70 -3.71 -0.02 3.46 16 11 C -0.13 -2.52 6.08 -26.61 -0.16 -2.68 16 12 C -0.11 -1.92 5.36 -26.69 -0.14 -2.06 16 13 C 0.12 2.35 2.59 -68.03 -0.18 2.17 16 14 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 15 N -0.70 -11.36 5.07 -54.75 -0.28 -11.64 16 16 C 0.56 9.60 7.78 -12.18 -0.09 9.50 16 17 O -0.53 -10.79 15.99 5.36 0.09 -10.70 16 18 C 0.09 1.18 6.75 -83.00 -0.56 0.62 16 19 C -0.11 -1.31 9.63 -39.05 -0.38 -1.68 16 20 C -0.08 -0.67 10.17 -39.31 -0.40 -1.07 16 21 C -0.16 -1.12 10.11 -39.32 -0.40 -1.52 16 22 C 0.10 0.84 11.18 -17.57 -0.20 0.64 16 23 N -0.46 -5.59 9.54 -9.80 -0.09 -5.68 16 24 C 0.14 3.28 6.06 -3.93 -0.02 3.26 16 25 H 0.27 8.20 6.72 -40.82 -0.27 7.93 16 26 H 0.02 0.42 7.85 -51.93 -0.41 0.02 16 27 H 0.08 2.12 6.38 -51.93 -0.33 1.79 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.41 5.70 7.93 -40.82 -0.32 5.37 16 33 H 0.15 1.70 7.64 -52.49 -0.40 1.30 16 34 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 36 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.06 1.47 7.93 -51.93 -0.41 1.06 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 316.64 15.07 4.77 4.77 Total: -1.00 -33.88 316.64 -8.32 -42.20 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.14 Total: 3.72 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -2.77 Total: -0.37 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.17 Total: -60.48 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.10 Total: 20.86 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.88 -8.32 -42.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006580381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.184 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds