Wall clock time and date at job start Mon Mar 30 2020 01:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99852 * 2 1 4 4 H 1.48493 * 109.47179 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47343 * 240.00188 * 3 2 1 6 6 H 1.48505 * 109.46857 * 120.00511 * 3 2 1 7 7 C 1.38814 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00058 * 204.22080 * 7 2 1 9 9 N 1.36943 * 119.99794 * 24.22367 * 7 2 1 10 10 C 1.46930 * 120.63047 * 29.24542 * 9 7 2 11 11 C 1.53187 * 108.77447 * 126.36972 * 10 9 7 12 12 C 1.53044 * 109.31450 * 54.63251 * 11 10 9 13 13 C 1.53042 * 109.53662 * 298.63496 * 12 11 10 14 14 H 1.08994 * 109.49521 * 301.38128 * 13 12 11 15 15 N 1.46499 * 109.49455 * 181.31498 * 13 12 11 16 16 C 1.34778 * 119.99533 * 154.99917 * 15 13 12 17 17 O 1.21507 * 120.00732 * 359.97438 * 16 15 13 18 18 C 1.48179 * 119.99498 * 180.02562 * 16 15 13 19 19 C 1.39310 * 119.72133 * 179.97438 * 18 16 15 20 20 C 1.38590 * 119.05927 * 179.97438 * 19 18 16 21 21 C 1.38629 * 118.48540 * 0.02562 * 20 19 18 22 22 C 1.38556 * 119.35747 * 359.97438 * 21 20 19 23 23 N 1.31525 * 120.89906 * 359.74076 * 22 21 20 24 24 C 1.46926 * 120.62610 * 208.96279 * 9 7 2 25 25 H 0.96998 * 119.99374 * 185.77013 * 1 2 3 26 26 H 1.09001 * 109.58218 * 246.15690 * 10 9 7 27 27 H 1.08998 * 109.58258 * 6.43678 * 10 9 7 28 28 H 1.09001 * 109.49858 * 174.58638 * 11 10 9 29 29 H 1.09006 * 109.49530 * 294.67981 * 11 10 9 30 30 H 1.09002 * 109.45884 * 58.65430 * 12 11 10 31 31 H 1.08992 * 109.45705 * 178.62592 * 12 11 10 32 32 H 0.97000 * 120.00026 * 335.00171 * 15 13 12 33 33 H 1.08001 * 120.46672 * 359.97438 * 19 18 16 34 34 H 1.07995 * 120.75374 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.31961 * 180.02562 * 21 20 19 36 36 H 1.07994 * 119.55075 * 180.02562 * 22 21 20 37 37 H 1.08991 * 109.58972 * 353.42219 * 24 9 7 38 38 H 1.09000 * 109.58442 * 113.84695 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6965 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0190 -1.2434 0.3831 9 7 1.4161 -2.3357 -0.4877 10 6 0.3974 -2.2524 -1.5432 11 6 0.8093 -3.1691 -2.6993 12 6 1.0461 -4.5833 -2.1644 13 6 2.1818 -4.5591 -1.1389 14 1 3.0863 -4.1707 -1.6069 15 7 2.4287 -5.9181 -0.6507 16 6 3.6400 -6.2483 -0.1606 17 8 4.5275 -5.4191 -0.1242 18 6 3.8899 -7.6231 0.3327 19 6 5.1443 -7.9584 0.8376 20 6 5.3627 -9.2479 1.2958 21 6 4.3188 -10.1578 1.2326 22 6 3.0970 -9.7551 0.7179 23 7 2.9152 -8.5231 0.2950 24 6 1.7895 -3.6586 0.0310 25 1 -0.4849 -0.8358 0.0845 26 1 -0.5660 -2.5739 -1.1474 27 1 0.3221 -1.2245 -1.8980 28 1 0.0162 -3.1908 -3.4467 29 1 1.7267 -2.7932 -3.1525 30 1 0.1357 -4.9490 -1.6894 31 1 1.3156 -5.2430 -2.9891 32 1 1.7204 -6.5802 -0.6801 33 1 5.9352 -7.2237 0.8714 34 1 6.3244 -9.5374 1.6930 35 1 4.4562 -11.1705 1.5818 36 1 2.2814 -10.4613 0.6676 37 1 2.6341 -3.5588 0.7127 38 1 0.9420 -4.0971 0.5578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006580381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:50 Heat of formation + Delta-G solvation = -6.899261 kcal Electronic energy + Delta-G solvation = -20934.037873 eV Core-core repulsion = 17775.724587 eV Total energy + Delta-G solvation = -3158.313286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.70034 -40.37895 -39.06871 -36.24530 -34.41932 -33.46670 -32.49779 -32.30425 -30.28636 -27.13054 -25.89336 -24.47324 -24.05896 -23.48202 -21.71423 -21.15060 -19.45049 -19.12692 -17.83376 -17.08308 -16.66058 -16.48226 -16.24318 -15.98447 -15.84240 -15.48189 -15.22523 -15.02883 -14.50459 -14.37403 -14.16293 -14.03139 -13.66325 -13.05454 -12.92231 -12.62706 -12.49849 -11.98021 -11.90241 -11.86672 -11.75797 -11.38971 -11.27032 -10.97278 -10.66913 -10.56429 -10.33232 -10.10862 -8.97900 -8.30108 -5.48170 -0.38907 0.24712 1.55523 1.62933 1.65867 1.83146 1.95464 2.62230 2.85425 3.07251 3.17284 3.52358 3.71315 3.82751 3.95779 3.96947 4.03544 4.08284 4.09805 4.28767 4.37362 4.50075 4.63579 4.69946 4.75986 4.86134 4.95016 4.98432 5.07393 5.10652 5.15177 5.21560 5.31208 5.46993 5.63262 5.78493 6.33794 6.36561 6.78415 6.99465 7.09743 7.71500 8.13352 8.93813 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029352 B = 0.004028 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.719333 B = 6949.695255 C = 7513.235455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.067 4.067 3 Si 1.115 2.885 4 H -0.284 1.284 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.364 4.364 8 H 0.037 0.963 9 N -0.614 5.614 10 C 0.151 3.849 11 C -0.124 4.124 12 C -0.104 4.104 13 C 0.140 3.860 14 H 0.060 0.940 15 N -0.691 5.691 16 C 0.559 3.441 17 O -0.576 6.576 18 C 0.053 3.947 19 C -0.127 4.127 20 C -0.078 4.078 21 C -0.133 4.133 22 C 0.090 3.910 23 N -0.478 5.478 24 C 0.148 3.852 25 H 0.256 0.744 26 H 0.014 0.986 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.419 0.581 33 H 0.137 0.863 34 H 0.175 0.825 35 H 0.184 0.816 36 H 0.196 0.804 37 H 0.026 0.974 38 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.945 -24.138 -1.024 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.264 4.264 3 Si 0.939 3.061 4 H -0.209 1.209 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.494 4.494 8 H 0.055 0.945 9 N -0.339 5.339 10 C 0.026 3.974 11 C -0.163 4.163 12 C -0.142 4.142 13 C 0.033 3.967 14 H 0.078 0.922 15 N -0.341 5.341 16 C 0.346 3.654 17 O -0.455 6.455 18 C -0.083 4.083 19 C -0.148 4.148 20 C -0.104 4.104 21 C -0.152 4.152 22 C -0.070 4.070 23 N -0.191 5.191 24 C 0.021 3.979 25 H 0.065 0.935 26 H 0.032 0.968 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.256 0.744 33 H 0.154 0.846 34 H 0.193 0.807 35 H 0.201 0.799 36 H 0.213 0.787 37 H 0.045 0.955 38 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 5.580 -21.586 -1.409 22.339 hybrid contribution 0.658 -1.707 0.717 1.965 sum 6.238 -23.292 -0.692 24.123 Atomic orbital electron populations 1.70897 1.07248 1.29489 1.49977 1.27247 0.96654 1.04559 0.97931 0.82865 0.73911 0.72063 0.77256 1.20924 1.20530 1.20552 1.20164 0.96596 0.89852 1.42770 0.94510 1.44256 1.47142 1.01356 1.41150 1.20958 0.89847 0.98440 0.88196 1.21931 1.01747 0.94721 0.97925 1.21617 0.97147 0.97634 0.97818 1.21245 0.98975 0.81108 0.95343 0.92208 1.45780 1.13435 1.13109 1.61790 1.18525 0.82551 0.87113 0.77261 1.90780 1.45613 1.51687 1.57421 1.20843 0.92549 0.92969 1.01985 1.22269 0.96774 0.99058 0.96690 1.22057 1.01652 0.91126 0.95549 1.22888 0.92872 1.02607 0.96855 1.23518 0.98648 0.91461 0.93386 1.67487 1.32547 1.03713 1.15313 1.21090 0.96432 0.86101 0.94282 0.93460 0.96838 0.93444 0.88930 0.93057 0.90479 0.89210 0.74358 0.84557 0.80745 0.79862 0.78689 0.95503 0.96323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.42 12.45 21.65 0.27 -58.15 16 2 C -0.07 -4.00 4.69 84.86 0.40 -3.60 16 3 Si 1.12 53.43 29.98 68.60 2.06 55.48 16 4 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 7 C -0.36 -22.17 9.48 84.03 0.80 -21.37 16 8 H 0.04 2.33 7.94 -2.91 -0.02 2.31 16 9 N -0.61 -33.34 2.84 -699.94 -1.99 -35.33 16 10 C 0.15 7.27 4.70 86.36 0.41 7.68 16 11 C -0.12 -4.53 6.08 30.67 0.19 -4.35 16 12 C -0.10 -3.30 5.36 30.62 0.16 -3.13 16 13 C 0.14 5.39 2.59 44.93 0.12 5.51 16 14 H 0.06 2.67 7.58 -2.39 -0.02 2.65 16 15 N -0.69 -22.68 5.07 -445.42 -2.26 -24.94 16 16 C 0.56 19.85 7.78 86.88 0.68 20.53 16 17 O -0.58 -25.18 15.99 -3.74 -0.06 -25.24 16 18 C 0.05 1.46 6.75 41.91 0.28 1.75 16 19 C -0.13 -2.87 9.63 22.61 0.22 -2.65 16 20 C -0.08 -1.03 10.17 22.45 0.23 -0.80 16 21 C -0.13 -1.28 10.11 22.44 0.23 -1.05 16 22 C 0.09 1.24 11.18 84.81 0.95 2.19 16 23 N -0.48 -10.85 9.54 -184.91 -1.76 -12.61 16 24 C 0.15 7.06 6.06 86.22 0.52 7.58 16 25 H 0.26 16.20 6.72 -92.71 -0.62 15.58 16 26 H 0.01 0.66 7.85 -2.39 -0.02 0.64 16 27 H 0.05 2.58 6.38 -2.39 -0.02 2.56 16 28 H 0.09 2.77 8.14 -2.39 -0.02 2.76 16 29 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.42 11.43 7.93 -92.71 -0.74 10.70 16 33 H 0.14 3.31 7.64 -2.91 -0.02 3.29 16 34 H 0.18 1.08 8.06 -2.91 -0.02 1.05 16 35 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 36 H 0.20 1.24 8.06 -2.91 -0.02 1.22 16 37 H 0.03 1.41 7.93 -2.39 -0.02 1.39 16 38 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -79.44 316.64 1.91 -77.54 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.48 Total: 14.97 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 5.17 Total: 8.28 kcal Atomic # 7 Polarization: -125.29 SS G_CDS: -5.74 Total: -131.03 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.06 Total: -25.24 kcal Atomic # 14 Polarization: 53.43 SS G_CDS: 2.06 Total: 55.48 kcal Total: -79.44 1.91 -77.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006580381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.640 kcal (2) G-P(sol) polarization free energy of solvation -79.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds